Wall clock time and date at job start Mon Mar 30 2020 03:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30501 * 1 3 3 Si 1.86797 * 119.99885 * 2 1 4 4 H 1.48503 * 109.47348 * 274.97779 * 3 2 1 5 5 H 1.48503 * 109.47055 * 34.98070 * 3 2 1 6 6 H 1.48504 * 109.47200 * 154.98055 * 3 2 1 7 7 C 1.40466 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99753 * 186.00371 * 7 2 1 9 9 C 1.40333 * 120.00046 * 6.00135 * 7 2 1 10 10 N 1.33327 * 126.79790 * 174.32860 * 9 7 2 11 11 C 1.33564 * 105.51896 * 179.97438 * 10 9 7 12 12 C 1.50700 * 126.07435 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.38643 * 0.19967 * 12 11 10 14 14 C 1.52577 * 109.39124 * 120.00125 * 12 11 10 15 15 C 1.52579 * 110.72884 * 190.82761 * 14 12 11 16 16 C 1.53098 * 109.95588 * 289.32219 * 15 14 12 17 17 S 1.81747 * 108.83846 * 63.02306 * 16 15 14 18 18 C 1.53094 * 109.39412 * 240.49719 * 12 11 10 19 19 N 1.30454 * 107.85586 * 0.22769 * 11 10 9 20 20 O 1.21283 * 110.67901 * 359.59327 * 19 11 10 21 21 H 0.96995 * 120.00545 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.22576 * 70.50122 * 14 12 11 23 23 H 1.09003 * 109.19015 * 311.12433 * 14 12 11 24 24 H 1.08999 * 109.39314 * 169.17266 * 15 14 12 25 25 H 1.09003 * 109.39419 * 49.47384 * 15 14 12 26 26 H 1.08997 * 109.58165 * 182.83072 * 16 15 14 27 27 H 1.08997 * 109.57465 * 303.21970 * 16 15 14 28 28 H 1.09003 * 109.57432 * 296.63963 * 18 12 11 29 29 H 1.09006 * 109.57474 * 57.01310 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2390 1.6177 0.0000 4 1 2.3813 2.1072 -1.3948 5 1 1.4930 2.6200 0.8027 6 1 3.5852 1.4121 0.5921 7 6 2.0074 -1.2165 0.0005 8 1 3.0829 -1.2189 0.0984 9 6 1.3115 -2.4285 -0.1260 10 7 1.8426 -3.6454 -0.2471 11 6 0.8046 -4.4811 -0.3365 12 6 0.8813 -5.9785 -0.4886 13 1 1.9266 -6.2866 -0.5121 14 6 0.1834 -6.6442 0.6936 15 6 0.4690 -8.1429 0.7153 16 6 -0.2626 -8.8310 -0.4402 17 16 0.3856 -8.1874 -2.0115 18 6 0.2021 -6.3920 -1.7968 19 7 -0.2876 -3.7704 -0.2741 20 8 -0.0258 -2.5929 -0.1484 21 1 -0.4851 0.8400 -0.0004 22 1 -0.8918 -6.4848 0.6119 23 1 0.5430 -6.1969 1.6203 24 1 0.1272 -8.5628 1.6613 25 1 1.5417 -8.3084 0.6142 26 1 -0.0952 -9.9068 -0.3895 27 1 -1.3302 -8.6220 -0.3726 28 1 -0.8565 -6.1353 -1.7557 29 1 0.6731 -5.8742 -2.6324 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260127918.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:38 Heat of formation + Delta-G solvation = 27.921233 kcal Electronic energy + Delta-G solvation = -14909.225200 eV Core-core repulsion = 12346.301379 eV Total energy + Delta-G solvation = -2562.923821 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.07469 -37.10976 -34.14421 -33.60027 -31.65186 -29.72044 -27.09124 -26.50338 -23.71225 -21.67945 -21.38296 -19.87939 -17.63955 -16.52898 -15.79210 -15.46936 -15.04197 -14.96829 -14.30886 -13.47298 -13.42195 -13.30596 -12.88259 -12.67846 -11.75743 -11.70575 -11.48801 -11.28957 -11.25052 -10.77646 -10.60819 -10.38634 -10.09182 -9.95930 -9.75858 -9.42142 -8.94398 -8.30646 -7.58656 -7.12176 -5.05618 1.88209 2.59926 2.76213 2.94200 3.00543 3.24536 3.71216 3.85670 4.73278 4.81330 4.93759 4.96692 5.11104 5.22129 5.37150 5.39095 5.58958 5.68144 5.78526 5.86171 5.98569 6.06538 6.27503 6.37388 6.67153 6.81908 7.36424 7.87060 8.07544 8.28005 8.43406 9.87087 10.34144 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.064992 B = 0.005285 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.715959 B = 5296.876266 C = 5337.510047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.071 3.929 3 Si 0.936 3.064 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.417 4.417 8 H 0.113 0.887 9 C 0.302 3.698 10 N -0.612 5.612 11 C 0.164 3.836 12 C 0.019 3.981 13 H 0.097 0.903 14 C -0.118 4.118 15 C -0.119 4.119 16 C -0.080 4.080 17 S -0.275 6.275 18 C -0.062 4.062 19 N -0.467 5.467 20 O 0.045 5.955 21 H 0.292 0.708 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.267 -8.137 0.445 8.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.154 4.154 3 Si 0.759 3.241 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.454 4.454 8 H 0.131 0.869 9 C 0.112 3.888 10 N -0.356 5.356 11 C -0.112 4.112 12 C -0.003 4.003 13 H 0.115 0.885 14 C -0.156 4.156 15 C -0.158 4.158 16 C -0.229 4.229 17 S -0.048 6.048 18 C -0.211 4.211 19 N -0.197 5.197 20 O -0.002 6.002 21 H 0.103 0.897 22 H 0.087 0.913 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.120 0.880 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.504 -9.195 -0.514 9.223 hybrid contribution -0.182 1.684 0.996 1.965 sum -0.685 -7.510 0.482 7.557 Atomic orbital electron populations 1.69634 1.07798 1.30843 1.30734 1.26201 0.95108 1.02308 0.91805 0.85825 0.80236 0.78570 0.79506 1.18912 1.19681 1.17921 1.18587 0.95440 0.85645 1.45749 0.86916 1.24219 0.79945 0.93944 0.90735 1.72249 1.28473 0.98926 1.35952 1.24671 0.86683 0.97254 1.02581 1.19361 1.01036 0.86599 0.93323 0.88477 1.21511 1.01278 0.94121 0.98711 1.21733 1.01360 0.95214 0.97477 1.23444 1.02424 1.02719 0.94273 1.86690 1.85009 1.07141 1.25971 1.23484 1.04579 0.91930 1.01100 1.74277 1.24557 0.91386 1.29440 1.85535 1.25851 1.18349 1.70477 0.89670 0.91282 0.90889 0.90796 0.90455 0.88032 0.89911 0.89287 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.25 12.09 55.57 0.67 -18.58 15 2 C 0.07 1.70 5.50 -17.28 -0.09 1.61 15 3 Si 0.94 17.44 29.57 -169.99 -5.03 12.42 15 4 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 5 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 6 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15 7 C -0.42 -10.94 9.47 -37.96 -0.36 -11.30 15 8 H 0.11 2.80 7.86 -52.49 -0.41 2.38 15 9 C 0.30 8.53 7.81 -16.35 -0.13 8.41 15 10 N -0.61 -16.65 11.61 -11.51 -0.13 -16.79 15 11 C 0.16 4.01 6.64 -156.78 -1.04 2.97 15 12 C 0.02 0.35 2.50 -91.94 -0.23 0.12 15 13 H 0.10 1.83 8.06 -51.93 -0.42 1.41 15 14 C -0.12 -1.90 4.91 -27.16 -0.13 -2.03 15 15 C -0.12 -1.46 5.75 -26.90 -0.15 -1.61 15 16 C -0.08 -0.95 6.46 37.21 0.24 -0.71 15 17 S -0.28 -4.03 22.33 -107.50 -2.40 -6.43 15 18 C -0.06 -1.06 5.71 37.21 0.21 -0.85 15 19 N -0.47 -12.40 12.15 31.51 0.38 -12.01 15 20 O 0.04 1.29 9.77 15.13 0.15 1.44 15 21 H 0.29 6.51 8.29 -40.82 -0.34 6.17 15 22 H 0.07 1.14 8.08 -51.93 -0.42 0.72 15 23 H 0.07 1.25 8.08 -51.93 -0.42 0.83 15 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 25 H 0.08 0.95 8.06 -51.93 -0.42 0.53 15 26 H 0.10 0.99 8.14 -51.93 -0.42 0.56 15 27 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 28 H 0.09 1.57 8.14 -51.93 -0.42 1.15 15 29 H 0.10 1.87 8.14 -51.92 -0.42 1.44 15 LS Contribution 262.71 15.07 3.96 3.96 Total: -1.00 -29.11 262.71 -7.42 -36.54 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -3.34 Total: 2.85 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.69 Total: -3.39 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.92 Total: -47.38 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: 0.15 Total: 1.44 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.42 kcal Atomic # 16 Polarization: -4.03 SS G_CDS: -2.40 Total: -6.43 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.11 -7.42 -36.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260127918.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.456 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds