Wall clock time and date at job start Mon Mar 30 2020 03:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30501 * 1 3 3 Si 1.86797 * 119.99885 * 2 1 4 4 H 1.48503 * 109.47348 * 274.97779 * 3 2 1 5 5 H 1.48503 * 109.47055 * 34.98070 * 3 2 1 6 6 H 1.48504 * 109.47200 * 154.98055 * 3 2 1 7 7 C 1.40466 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99753 * 186.00371 * 7 2 1 9 9 C 1.40333 * 120.00046 * 6.00135 * 7 2 1 10 10 N 1.33327 * 126.79790 * 174.32860 * 9 7 2 11 11 C 1.33564 * 105.51896 * 179.97438 * 10 9 7 12 12 C 1.50700 * 126.07435 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.38643 * 0.19967 * 12 11 10 14 14 C 1.52577 * 109.39124 * 120.00125 * 12 11 10 15 15 C 1.52579 * 110.72884 * 190.82761 * 14 12 11 16 16 C 1.53098 * 109.95588 * 289.32219 * 15 14 12 17 17 S 1.81747 * 108.83846 * 63.02306 * 16 15 14 18 18 C 1.53094 * 109.39412 * 240.49719 * 12 11 10 19 19 N 1.30454 * 107.85586 * 0.22769 * 11 10 9 20 20 O 1.21283 * 110.67901 * 359.59327 * 19 11 10 21 21 H 0.96995 * 120.00545 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.22576 * 70.50122 * 14 12 11 23 23 H 1.09003 * 109.19015 * 311.12433 * 14 12 11 24 24 H 1.08999 * 109.39314 * 169.17266 * 15 14 12 25 25 H 1.09003 * 109.39419 * 49.47384 * 15 14 12 26 26 H 1.08997 * 109.58165 * 182.83072 * 16 15 14 27 27 H 1.08997 * 109.57465 * 303.21970 * 16 15 14 28 28 H 1.09003 * 109.57432 * 296.63963 * 18 12 11 29 29 H 1.09006 * 109.57474 * 57.01310 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2390 1.6177 0.0000 4 1 2.3813 2.1072 -1.3948 5 1 1.4930 2.6200 0.8027 6 1 3.5852 1.4121 0.5921 7 6 2.0074 -1.2165 0.0005 8 1 3.0829 -1.2189 0.0984 9 6 1.3115 -2.4285 -0.1260 10 7 1.8426 -3.6454 -0.2471 11 6 0.8046 -4.4811 -0.3365 12 6 0.8813 -5.9785 -0.4886 13 1 1.9266 -6.2866 -0.5121 14 6 0.1834 -6.6442 0.6936 15 6 0.4690 -8.1429 0.7153 16 6 -0.2626 -8.8310 -0.4402 17 16 0.3856 -8.1874 -2.0115 18 6 0.2021 -6.3920 -1.7968 19 7 -0.2876 -3.7704 -0.2741 20 8 -0.0258 -2.5929 -0.1484 21 1 -0.4851 0.8400 -0.0004 22 1 -0.8918 -6.4848 0.6119 23 1 0.5430 -6.1969 1.6203 24 1 0.1272 -8.5628 1.6613 25 1 1.5417 -8.3084 0.6142 26 1 -0.0952 -9.9068 -0.3895 27 1 -1.3302 -8.6220 -0.3726 28 1 -0.8565 -6.1353 -1.7557 29 1 0.6731 -5.8742 -2.6324 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260127918.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:37 Heat of formation + Delta-G solvation = 8.578368 kcal Electronic energy + Delta-G solvation = -14910.063970 eV Core-core repulsion = 12346.301379 eV Total energy + Delta-G solvation = -2563.762590 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.08033 -38.50394 -36.09292 -35.38595 -33.21723 -31.51845 -28.53129 -28.30938 -25.23178 -23.68310 -22.76690 -21.52574 -19.45333 -17.99937 -17.73437 -17.32821 -16.75073 -16.25072 -15.56887 -15.14494 -14.87593 -14.58272 -14.11659 -13.97960 -13.67622 -13.43468 -13.09773 -12.63353 -12.51978 -12.18498 -12.00727 -11.95764 -11.91186 -11.66106 -11.42708 -11.00387 -10.77746 -10.28366 -8.98260 -8.75688 -7.11809 0.68503 0.96402 1.39673 1.42307 1.56278 1.60169 2.00704 2.14027 2.97552 3.17223 3.42422 3.46490 3.71466 3.85303 4.01688 4.11605 4.21636 4.39954 4.53288 4.60279 4.74387 4.91599 4.92118 4.96558 5.02004 5.24743 5.49399 5.85165 6.05677 6.26527 6.42869 8.04025 8.28115 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.064992 B = 0.005285 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.715959 B = 5296.876266 C = 5337.510047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.029 3.971 3 Si 1.021 2.979 4 H -0.256 1.256 5 H -0.257 1.257 6 H -0.247 1.247 7 C -0.435 4.435 8 H 0.121 0.879 9 C 0.270 3.730 10 N -0.641 5.641 11 C 0.175 3.825 12 C 0.019 3.981 13 H 0.097 0.903 14 C -0.112 4.112 15 C -0.109 4.109 16 C -0.074 4.074 17 S -0.272 6.272 18 C -0.060 4.060 19 N -0.488 5.488 20 O 0.010 5.990 21 H 0.306 0.694 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.105 0.895 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 -8.604 0.878 8.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.193 4.193 3 Si 0.838 3.162 4 H -0.180 1.180 5 H -0.181 1.181 6 H -0.170 1.170 7 C -0.472 4.472 8 H 0.139 0.861 9 C 0.082 3.918 10 N -0.386 5.386 11 C -0.102 4.102 12 C -0.002 4.002 13 H 0.115 0.885 14 C -0.151 4.151 15 C -0.148 4.148 16 C -0.222 4.222 17 S -0.044 6.044 18 C -0.209 4.209 19 N -0.223 5.223 20 O -0.031 6.031 21 H 0.118 0.882 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.123 0.877 25 H 0.099 0.901 26 H 0.153 0.847 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.004 -9.651 -0.077 9.651 hybrid contribution -0.363 1.789 0.877 2.025 sum -0.367 -7.862 0.800 7.911 Atomic orbital electron populations 1.69686 1.09738 1.32986 1.29685 1.27388 0.95906 1.05783 0.90222 0.84610 0.78821 0.72764 0.80048 1.17999 1.18119 1.17024 1.19142 0.96129 0.86307 1.45613 0.86099 1.24816 0.80251 0.95106 0.91621 1.72242 1.29529 0.99240 1.37624 1.25585 0.85530 0.99423 0.99629 1.19612 1.01728 0.83256 0.95652 0.88512 1.21481 1.00292 0.96876 0.96446 1.21687 1.01867 0.91939 0.99306 1.23620 1.02637 1.04196 0.91734 1.86691 1.85326 1.03898 1.28535 1.23243 1.03433 0.94743 0.99455 1.74209 1.25356 0.91042 1.31714 1.85477 1.26144 1.19417 1.72085 0.88232 0.91950 0.92370 0.87670 0.90071 0.84745 0.89055 0.90226 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.47 12.09 21.91 0.26 -40.21 15 2 C 0.03 1.39 5.50 85.43 0.47 1.86 15 3 Si 1.02 34.57 29.57 68.60 2.03 36.60 15 4 H -0.26 -8.31 7.11 99.48 0.71 -7.60 15 5 H -0.26 -8.08 7.11 99.48 0.71 -7.37 15 6 H -0.25 -7.99 7.11 99.48 0.71 -7.28 15 7 C -0.43 -23.31 9.47 23.32 0.22 -23.09 15 8 H 0.12 6.07 7.86 -2.91 -0.02 6.05 15 9 C 0.27 15.90 7.81 85.06 0.66 16.56 15 10 N -0.64 -36.25 11.61 -305.23 -3.54 -39.80 15 11 C 0.17 8.87 6.64 138.61 0.92 9.79 15 12 C 0.02 0.74 2.50 -11.65 -0.03 0.71 15 13 H 0.10 3.67 8.06 -2.39 -0.02 3.65 15 14 C -0.11 -3.55 4.91 30.31 0.15 -3.40 15 15 C -0.11 -2.36 5.75 30.49 0.18 -2.18 15 16 C -0.07 -1.49 6.46 72.01 0.46 -1.02 15 17 S -0.27 -7.49 22.33 -56.49 -1.26 -8.75 15 18 C -0.06 -2.07 5.71 72.01 0.41 -1.66 15 19 N -0.49 -27.08 12.15 -56.62 -0.69 -27.76 15 20 O 0.01 0.62 9.77 64.21 0.63 1.25 15 21 H 0.31 13.57 8.29 -92.71 -0.77 12.80 15 22 H 0.06 2.04 8.08 -2.39 -0.02 2.02 15 23 H 0.06 1.99 8.08 -2.39 -0.02 1.97 15 24 H 0.11 1.72 8.14 -2.39 -0.02 1.70 15 25 H 0.08 1.75 8.06 -2.39 -0.02 1.73 15 26 H 0.13 1.94 8.14 -2.39 -0.02 1.92 15 27 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 28 H 0.08 2.87 8.14 -2.39 -0.02 2.86 15 29 H 0.09 3.27 8.14 -2.38 -0.02 3.25 15 Total: -1.00 -65.69 262.71 2.03 -63.67 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 1.16 Total: 17.43 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 3.45 Total: -2.42 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -3.97 Total: -107.77 kcal Atomic # 8 Polarization: 0.62 SS G_CDS: 0.63 Total: 1.25 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.60 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -1.26 Total: -8.75 kcal Total: -65.69 2.03 -63.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260127918.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.244 kcal (2) G-P(sol) polarization free energy of solvation -65.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds