Wall clock time and date at job start Mon Mar 30 2020 03:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.44788 * 2 1 4 4 N 1.30745 * 126.28856 * 300.22963 * 3 2 1 5 5 C 1.36359 * 105.50947 * 179.97438 * 4 3 2 6 6 C 1.41740 * 126.58533 * 179.97438 * 5 4 3 7 7 H 1.08007 * 120.00036 * 359.97438 * 6 5 4 8 8 C 1.39972 * 119.99987 * 180.02562 * 6 5 4 9 9 N 1.30737 * 120.00195 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99959 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47458 * 89.99541 * 10 8 6 12 12 H 1.48496 * 109.47019 * 209.99692 * 10 8 6 13 13 H 1.48498 * 109.47426 * 329.99642 * 10 8 6 14 14 N 1.31855 * 106.82848 * 0.02562 * 5 4 3 15 15 O 1.21281 * 109.90012 * 359.74581 * 14 5 4 16 16 C 1.52930 * 109.60776 * 120.23475 * 2 1 3 17 17 C 1.53706 * 112.49516 * 150.03145 * 16 2 1 18 18 S 1.83400 * 105.05818 * 357.12000 * 17 16 2 19 19 C 1.55153 * 109.59963 * 239.77221 * 2 1 3 20 20 H 1.09000 * 109.46999 * 299.76332 * 1 2 3 21 21 H 1.08999 * 109.47361 * 59.76262 * 1 2 3 22 22 H 1.08995 * 109.46907 * 179.76970 * 1 2 3 23 23 H 0.96999 * 120.00691 * 180.02562 * 9 8 6 24 24 H 1.09000 * 108.88998 * 29.23668 * 16 2 1 25 25 H 1.09003 * 108.88740 * 270.82417 * 16 2 1 26 26 H 1.09002 * 110.34362 * 116.04760 * 17 16 2 27 27 H 1.09000 * 110.34191 * 238.19782 * 17 16 2 28 28 H 1.08992 * 111.13707 * 316.53879 * 19 2 1 29 29 H 1.09001 * 111.13328 * 80.67620 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0318 1.4211 0.0000 4 7 1.7891 2.3274 -0.9106 5 6 2.4428 3.4486 -0.4923 6 6 2.4775 4.7022 -1.1529 7 1 1.9497 4.8359 -2.0857 8 6 3.1967 5.7665 -0.5969 9 7 3.8360 5.6046 0.5319 10 14 3.2431 7.4184 -1.4679 11 1 2.1143 8.2594 -0.9947 12 1 4.5278 8.1001 -1.1681 13 1 3.1240 7.2090 -2.9332 14 7 3.0372 3.1424 0.6441 15 8 2.8036 1.9882 0.9343 16 6 2.0432 -0.7254 1.2447 17 6 3.3995 -1.4094 1.0094 18 16 3.7819 -1.1133 -0.7597 19 6 2.0505 -0.7358 -1.2629 20 1 -0.3633 0.5102 0.8921 21 1 -0.3634 0.5175 -0.8878 22 1 -0.3633 -1.0276 -0.0041 23 1 4.3341 6.3423 0.9175 24 1 1.3139 -1.4801 1.5391 25 1 2.1476 -0.0043 2.0554 26 1 4.1649 -0.9610 1.6427 27 1 3.3239 -2.4787 1.2069 28 1 1.4872 -1.6511 -1.4446 29 1 2.0271 -0.0832 -2.1356 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260156985.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:47 Heat of formation + Delta-G solvation = 49.073935 kcal Electronic energy + Delta-G solvation = -15303.950252 eV Core-core repulsion = 12741.943682 eV Total energy + Delta-G solvation = -2562.006571 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.20217 -37.48051 -34.34816 -32.88961 -30.75800 -29.46818 -27.35018 -26.49017 -24.01779 -22.17194 -21.56001 -19.41371 -17.21950 -16.24086 -16.06706 -15.86313 -15.24610 -14.39719 -14.11283 -13.84459 -13.14824 -12.98717 -12.72422 -12.12430 -11.78642 -11.51420 -11.39538 -11.28455 -11.02273 -10.94853 -10.73661 -10.34889 -10.16641 -10.02064 -9.76538 -9.19389 -9.01617 -8.04167 -7.45173 -6.58511 -4.58641 2.01900 2.49325 2.92024 3.06633 3.13587 3.18870 4.00685 4.05727 4.10176 4.56094 4.80291 4.86083 5.05981 5.29218 5.40326 5.50687 5.66985 5.68796 5.77693 5.79434 5.81146 6.03566 6.22664 6.34128 6.69010 6.98918 7.30470 7.80807 8.34563 8.57578 8.90025 10.37017 10.50616 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.041790 B = 0.006877 C = 0.006714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.856644 B = 4070.804238 C = 4169.561666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.042 3.958 3 C 0.131 3.869 4 N -0.515 5.515 5 C 0.291 3.709 6 C -0.435 4.435 7 H 0.090 0.910 8 C 0.071 3.929 9 N -0.774 5.774 10 Si 0.922 3.078 11 H -0.270 1.270 12 H -0.278 1.278 13 H -0.262 1.262 14 N -0.422 5.422 15 O 0.022 5.978 16 C -0.125 4.125 17 C -0.065 4.065 18 S -0.297 6.297 19 C -0.050 4.050 20 H 0.063 0.937 21 H 0.074 0.926 22 H 0.066 0.934 23 H 0.277 0.723 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 -11.641 0.851 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.038 3.962 3 C -0.092 4.092 4 N -0.256 5.256 5 C 0.039 3.961 6 C -0.476 4.476 7 H 0.108 0.892 8 C -0.150 4.150 9 N -0.403 5.403 10 Si 0.747 3.253 11 H -0.195 1.195 12 H -0.203 1.203 13 H -0.186 1.186 14 N -0.150 5.150 15 O -0.019 6.019 16 C -0.164 4.164 17 C -0.213 4.213 18 S -0.070 6.070 19 C -0.199 4.199 20 H 0.082 0.918 21 H 0.093 0.907 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.937 -11.004 0.538 11.402 hybrid contribution -0.886 0.810 0.288 1.234 sum -3.823 -10.194 0.825 10.918 Atomic orbital electron populations 1.21828 0.91251 1.02119 1.03880 1.19626 0.96662 0.85994 0.93905 1.27386 0.96029 0.96789 0.88958 1.72069 1.25874 1.00734 1.26927 1.22390 0.90975 0.93530 0.89243 1.18385 1.30401 0.91024 1.07765 0.89193 1.25814 0.93776 1.00750 0.94678 1.69867 1.22519 1.32586 1.15335 0.86088 0.78187 0.80647 0.80420 1.19527 1.20266 1.18567 1.75562 1.28046 0.91573 1.19780 1.85181 1.52501 1.20740 1.43498 1.22075 0.95550 1.00370 0.98388 1.23871 0.99957 1.03096 0.94419 1.87948 1.16123 1.92283 1.10639 1.24555 0.92413 1.02601 1.00341 0.91771 0.90723 0.91520 0.91252 0.89959 0.89001 0.88164 0.89248 0.88326 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 8.28 37.16 0.31 -1.40 15 2 C 0.04 0.66 0.77 -154.55 -0.12 0.54 15 3 C 0.13 2.92 6.08 -12.92 -0.08 2.84 15 4 N -0.52 -13.31 11.55 -10.83 -0.13 -13.44 15 5 C 0.29 8.55 7.70 -157.00 -1.21 7.34 15 6 C -0.43 -12.62 9.52 -37.60 -0.36 -12.98 15 7 H 0.09 2.48 7.85 -52.48 -0.41 2.07 15 8 C 0.07 1.93 5.49 -17.37 -0.10 1.84 15 9 N -0.77 -22.29 11.98 55.55 0.67 -21.62 15 10 Si 0.92 20.02 29.56 -169.99 -5.02 15.00 15 11 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 12 H -0.28 -5.87 7.11 56.52 0.40 -5.46 15 13 H -0.26 -5.55 7.11 56.52 0.40 -5.15 15 14 N -0.42 -12.48 10.49 30.27 0.32 -12.16 15 15 O 0.02 0.55 10.20 17.71 0.18 0.73 15 16 C -0.12 -1.63 5.22 -26.40 -0.14 -1.77 15 17 C -0.07 -0.85 7.38 37.52 0.28 -0.57 15 18 S -0.30 -4.88 22.86 -107.50 -2.46 -7.34 15 19 C -0.05 -0.74 6.30 38.30 0.24 -0.50 15 20 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.07 1.06 8.14 -51.93 -0.42 0.63 15 22 H 0.07 0.63 8.11 -51.93 -0.42 0.21 15 23 H 0.28 7.23 8.29 -40.82 -0.34 6.89 15 24 H 0.08 0.79 7.78 -51.93 -0.40 0.39 15 25 H 0.09 1.32 7.17 -51.93 -0.37 0.95 15 26 H 0.10 1.35 8.14 -51.93 -0.42 0.92 15 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 15 28 H 0.10 1.10 8.10 -51.93 -0.42 0.68 15 29 H 0.12 1.93 8.00 -51.93 -0.42 1.52 15 LS Contribution 262.58 15.07 3.96 3.96 Total: -1.00 -33.36 262.58 -6.93 -40.29 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -3.27 Total: -0.76 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -1.17 Total: -4.66 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.86 Total: -47.22 kcal Atomic # 8 Polarization: 0.55 SS G_CDS: 0.18 Total: 0.73 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: -4.88 SS G_CDS: -2.46 Total: -7.34 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.36 -6.93 -40.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156985.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.359 kcal (2) G-P(sol) polarization free energy of solvation -33.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds