Wall clock time and date at job start Mon Mar 30 2020 03:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.44788 * 2 1 4 4 N 1.30745 * 126.28856 * 300.22963 * 3 2 1 5 5 C 1.36359 * 105.50947 * 179.97438 * 4 3 2 6 6 C 1.41740 * 126.58533 * 179.97438 * 5 4 3 7 7 H 1.08007 * 120.00036 * 359.97438 * 6 5 4 8 8 C 1.39972 * 119.99987 * 180.02562 * 6 5 4 9 9 N 1.30737 * 120.00195 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99959 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47458 * 89.99541 * 10 8 6 12 12 H 1.48496 * 109.47019 * 209.99692 * 10 8 6 13 13 H 1.48498 * 109.47426 * 329.99642 * 10 8 6 14 14 N 1.31855 * 106.82848 * 0.02562 * 5 4 3 15 15 O 1.21281 * 109.90012 * 359.74581 * 14 5 4 16 16 C 1.52930 * 109.60776 * 120.23475 * 2 1 3 17 17 C 1.53706 * 112.49516 * 150.03145 * 16 2 1 18 18 S 1.83400 * 105.05818 * 357.12000 * 17 16 2 19 19 C 1.55153 * 109.59963 * 239.77221 * 2 1 3 20 20 H 1.09000 * 109.46999 * 299.76332 * 1 2 3 21 21 H 1.08999 * 109.47361 * 59.76262 * 1 2 3 22 22 H 1.08995 * 109.46907 * 179.76970 * 1 2 3 23 23 H 0.96999 * 120.00691 * 180.02562 * 9 8 6 24 24 H 1.09000 * 108.88998 * 29.23668 * 16 2 1 25 25 H 1.09003 * 108.88740 * 270.82417 * 16 2 1 26 26 H 1.09002 * 110.34362 * 116.04760 * 17 16 2 27 27 H 1.09000 * 110.34191 * 238.19782 * 17 16 2 28 28 H 1.08992 * 111.13707 * 316.53879 * 19 2 1 29 29 H 1.09001 * 111.13328 * 80.67620 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0318 1.4211 0.0000 4 7 1.7891 2.3274 -0.9106 5 6 2.4428 3.4486 -0.4923 6 6 2.4775 4.7022 -1.1529 7 1 1.9497 4.8359 -2.0857 8 6 3.1967 5.7665 -0.5969 9 7 3.8360 5.6046 0.5319 10 14 3.2431 7.4184 -1.4679 11 1 2.1143 8.2594 -0.9947 12 1 4.5278 8.1001 -1.1681 13 1 3.1240 7.2090 -2.9332 14 7 3.0372 3.1424 0.6441 15 8 2.8036 1.9882 0.9343 16 6 2.0432 -0.7254 1.2447 17 6 3.3995 -1.4094 1.0094 18 16 3.7819 -1.1133 -0.7597 19 6 2.0505 -0.7358 -1.2629 20 1 -0.3633 0.5102 0.8921 21 1 -0.3634 0.5175 -0.8878 22 1 -0.3633 -1.0276 -0.0041 23 1 4.3341 6.3423 0.9175 24 1 1.3139 -1.4801 1.5391 25 1 2.1476 -0.0043 2.0554 26 1 4.1649 -0.9610 1.6427 27 1 3.3239 -2.4787 1.2069 28 1 1.4872 -1.6511 -1.4446 29 1 2.0271 -0.0832 -2.1356 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260156985.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:47 Heat of formation + Delta-G solvation = 25.181854 kcal Electronic energy + Delta-G solvation = -15304.986291 eV Core-core repulsion = 12741.943682 eV Total energy + Delta-G solvation = -2563.042609 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.25335 -38.74067 -36.40873 -34.89040 -32.18533 -31.17260 -28.67109 -28.43465 -25.31830 -23.75592 -23.58003 -21.08013 -18.92148 -18.10318 -17.89704 -17.39662 -16.89563 -16.16497 -15.33985 -15.15843 -14.76340 -14.32178 -13.86182 -13.39067 -13.26989 -13.10795 -13.00372 -12.84242 -12.51641 -12.35877 -12.14791 -12.10529 -11.98771 -11.80551 -11.20939 -11.08488 -10.91486 -10.11228 -8.73199 -8.64159 -6.78246 0.84773 1.05433 1.34018 1.35423 1.37782 1.52900 2.06318 2.18737 2.49917 3.21538 3.29142 3.57855 3.70427 3.99914 4.10702 4.28539 4.42727 4.57092 4.58880 4.73511 4.75083 4.88116 4.92864 5.11466 5.17455 5.25251 5.30972 5.79075 6.17169 6.47792 6.76490 8.34792 8.48137 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.041790 B = 0.006877 C = 0.006714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.856644 B = 4070.804238 C = 4169.561666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.037 3.963 3 C 0.154 3.846 4 N -0.541 5.541 5 C 0.259 3.741 6 C -0.472 4.472 7 H 0.091 0.909 8 C 0.023 3.977 9 N -0.815 5.815 10 Si 1.008 2.992 11 H -0.257 1.257 12 H -0.266 1.266 13 H -0.254 1.254 14 N -0.462 5.462 15 O 0.013 5.987 16 C -0.123 4.123 17 C -0.048 4.048 18 S -0.376 6.376 19 C -0.032 4.032 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.119 0.881 23 H 0.285 0.715 24 H 0.134 0.866 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.130 0.870 28 H 0.148 0.852 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 -12.951 0.937 14.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.033 3.967 3 C -0.068 4.068 4 N -0.280 5.280 5 C 0.007 3.993 6 C -0.513 4.513 7 H 0.109 0.891 8 C -0.194 4.194 9 N -0.444 5.444 10 Si 0.826 3.174 11 H -0.182 1.182 12 H -0.190 1.190 13 H -0.178 1.178 14 N -0.192 5.192 15 O -0.026 6.026 16 C -0.161 4.161 17 C -0.195 4.195 18 S -0.150 6.150 19 C -0.180 4.180 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.137 0.863 23 H 0.095 0.905 24 H 0.153 0.847 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.149 0.851 28 H 0.166 0.834 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.264 -12.347 0.627 13.078 hybrid contribution -0.506 1.069 0.298 1.220 sum -4.771 -11.278 0.925 12.280 Atomic orbital electron populations 1.21872 0.88534 1.05246 1.02935 1.20182 0.98600 0.81956 0.95982 1.28764 0.92784 0.98855 0.86433 1.72044 1.26935 1.00733 1.28300 1.22893 0.91728 0.94865 0.89805 1.18821 1.31880 0.92137 1.08438 0.89060 1.26963 0.92329 1.04910 0.95190 1.69975 1.23035 1.34386 1.16982 0.84840 0.78908 0.74527 0.79115 1.18153 1.19028 1.17760 1.75526 1.29686 0.93400 1.20599 1.85080 1.53410 1.19905 1.44230 1.22136 0.96823 1.01052 0.96118 1.24010 0.99493 1.05531 0.90484 1.88272 1.19207 1.92608 1.14900 1.24591 0.91002 1.03865 0.98591 0.92144 0.92389 0.86266 0.90468 0.84750 0.90631 0.89264 0.85144 0.83401 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.28 71.98 0.60 -2.26 15 2 C 0.04 1.08 0.77 -52.21 -0.04 1.04 15 3 C 0.15 6.93 6.08 88.33 0.54 7.47 15 4 N -0.54 -28.82 11.55 -304.64 -3.52 -32.34 15 5 C 0.26 15.91 7.70 134.76 1.04 16.95 15 6 C -0.47 -28.40 9.52 23.56 0.22 -28.17 15 7 H 0.09 5.22 7.85 -2.91 -0.02 5.20 15 8 C 0.02 1.28 5.49 85.28 0.47 1.75 15 9 N -0.81 -48.18 11.98 21.82 0.26 -47.92 15 10 Si 1.01 41.34 29.56 68.60 2.03 43.37 15 11 H -0.26 -9.96 7.11 99.48 0.71 -9.26 15 12 H -0.27 -10.31 7.11 99.48 0.71 -9.61 15 13 H -0.25 -10.00 7.11 99.48 0.71 -9.29 15 14 N -0.46 -28.48 10.49 -60.22 -0.63 -29.12 15 15 O 0.01 0.70 10.20 73.42 0.75 1.45 15 16 C -0.12 -2.78 5.22 30.81 0.16 -2.62 15 17 C -0.05 -1.11 7.38 72.22 0.53 -0.57 15 18 S -0.38 -12.04 22.86 -56.49 -1.29 -13.33 15 19 C -0.03 -0.88 6.30 72.72 0.46 -0.42 15 20 H 0.06 1.42 8.14 -2.39 -0.02 1.41 15 21 H 0.06 1.52 8.14 -2.39 -0.02 1.50 15 22 H 0.12 1.50 8.11 -2.39 -0.02 1.48 15 23 H 0.29 15.17 8.29 -92.71 -0.77 14.41 15 24 H 0.13 1.74 7.78 -2.39 -0.02 1.72 15 25 H 0.07 2.02 7.17 -2.39 -0.02 2.00 15 26 H 0.09 2.28 8.14 -2.39 -0.02 2.26 15 27 H 0.13 2.01 8.14 -2.39 -0.02 1.99 15 28 H 0.15 2.61 8.10 -2.39 -0.02 2.59 15 29 H 0.09 2.97 8.00 -2.39 -0.02 2.95 15 Total: -1.00 -78.11 262.58 2.73 -75.38 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.16 Total: 9.34 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 3.98 Total: -6.84 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -3.89 Total: -109.37 kcal Atomic # 8 Polarization: 0.70 SS G_CDS: 0.75 Total: 1.45 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: -12.04 SS G_CDS: -1.29 Total: -13.33 kcal Total: -78.11 2.73 -75.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156985.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.564 kcal (2) G-P(sol) polarization free energy of solvation -78.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds