Wall clock time and date at job start Mon Mar 30 2020 03:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 108.83096 * 2 1 4 4 N 1.30746 * 126.28941 * 61.48647 * 3 2 1 5 5 C 1.36352 * 105.51473 * 179.97438 * 4 3 2 6 6 C 1.41738 * 126.58649 * 179.97438 * 5 4 3 7 7 H 1.07997 * 120.00007 * 359.97438 * 6 5 4 8 8 C 1.39972 * 119.99813 * 179.97438 * 6 5 4 9 9 N 1.30743 * 120.00070 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00167 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46712 * 359.97438 * 10 8 6 12 12 H 1.48488 * 109.47230 * 119.99923 * 10 8 6 13 13 H 1.48499 * 109.47056 * 240.00290 * 10 8 6 14 14 N 1.31862 * 106.82328 * 359.97438 * 5 4 3 15 15 O 1.21273 * 109.90564 * 0.02562 * 14 5 4 16 16 C 1.52333 * 108.87186 * 241.46819 * 2 1 3 17 17 C 1.54256 * 112.59043 * 239.32866 * 16 2 1 18 18 S 1.83953 * 102.58269 * 24.52495 * 17 16 2 19 19 C 1.54258 * 108.75562 * 118.46378 * 2 1 3 20 20 H 1.08998 * 109.46786 * 60.70486 * 1 2 3 21 21 H 1.08999 * 109.47163 * 180.70335 * 1 2 3 22 22 H 1.08997 * 109.47403 * 300.70110 * 1 2 3 23 23 H 0.97002 * 120.00177 * 179.97438 * 9 8 6 24 24 H 1.09006 * 108.86907 * 0.14344 * 16 2 1 25 25 H 1.09001 * 108.87438 * 118.50481 * 16 2 1 26 26 H 1.09007 * 110.78934 * 142.79895 * 17 16 2 27 27 H 1.09006 * 110.78652 * 266.06029 * 17 16 2 28 28 H 1.09002 * 110.79133 * 214.48647 * 19 2 1 29 29 H 1.09004 * 110.78419 * 337.94111 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0164 1.4263 0.0000 4 7 1.7900 2.3211 0.9260 5 6 2.4205 3.4531 0.5013 6 6 2.4602 4.7006 1.1729 7 1 1.9557 4.8201 2.1203 8 6 3.1531 5.7777 0.6082 9 7 3.7634 5.6332 -0.5390 10 14 3.2060 7.4218 1.4936 11 1 2.4420 7.3249 2.7633 12 1 4.6164 7.7792 1.7900 13 1 2.6009 8.4682 0.6310 14 7 2.9863 3.1641 -0.6542 15 8 2.7601 2.0093 -0.9473 16 6 2.0227 -0.6885 -1.2664 17 6 2.9018 -1.9203 -0.9674 18 16 2.3388 -2.4164 0.7121 19 6 2.0260 -0.6962 1.2841 20 1 -0.3633 0.5028 -0.8962 21 1 -0.3633 -1.0276 0.0126 22 1 -0.3634 0.5247 0.8836 23 1 4.2433 6.3797 -0.9305 24 1 1.1607 -1.0049 -1.8538 25 1 2.6025 0.0245 -1.8526 26 1 2.7127 -2.7149 -1.6893 27 1 3.9577 -1.6495 -0.9604 28 1 2.9457 -0.2348 1.6438 29 1 1.2560 -0.6790 2.0555 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260156990.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:49 Heat of formation + Delta-G solvation = 26.611430 kcal Electronic energy + Delta-G solvation = -15182.685263 eV Core-core repulsion = 12619.704645 eV Total energy + Delta-G solvation = -2562.980618 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.33468 -38.85237 -36.46429 -34.93735 -32.25091 -31.15967 -28.74279 -28.47205 -25.55770 -23.73340 -23.52459 -21.04080 -19.00534 -18.18252 -18.03770 -17.28192 -16.75636 -16.26340 -15.61701 -15.01338 -14.86814 -14.56379 -13.51287 -13.45590 -13.34832 -13.13583 -12.96944 -12.88175 -12.51152 -12.40839 -12.21206 -12.06695 -11.99170 -11.82452 -11.34826 -11.15916 -10.92671 -10.15244 -8.75806 -8.66881 -6.81503 0.79602 0.95248 1.24139 1.33120 1.36041 1.54747 2.02446 2.17974 2.48682 3.17817 3.22974 3.49333 3.70612 3.95122 4.06881 4.13589 4.44887 4.52996 4.57329 4.70835 4.74122 4.85391 4.94676 5.09796 5.14333 5.21657 5.25989 5.72611 6.15518 6.42884 6.73756 8.30998 8.42586 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.053248 B = 0.006032 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.719320 B = 4640.662264 C = 4777.761542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.045 3.955 3 C 0.144 3.856 4 N -0.535 5.535 5 C 0.259 3.741 6 C -0.470 4.470 7 H 0.093 0.907 8 C 0.023 3.977 9 N -0.812 5.812 10 Si 1.008 2.992 11 H -0.252 1.252 12 H -0.263 1.263 13 H -0.262 1.262 14 N -0.462 5.462 15 O 0.011 5.989 16 C -0.126 4.126 17 C -0.054 4.054 18 S -0.296 6.296 19 C -0.043 4.043 20 H 0.061 0.939 21 H 0.107 0.893 22 H 0.056 0.944 23 H 0.286 0.714 24 H 0.116 0.884 25 H 0.075 0.925 26 H 0.140 0.860 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.738 -11.525 -0.810 12.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.041 3.959 3 C -0.079 4.079 4 N -0.275 5.275 5 C 0.007 3.993 6 C -0.510 4.510 7 H 0.111 0.889 8 C -0.194 4.194 9 N -0.442 5.442 10 Si 0.827 3.173 11 H -0.176 1.176 12 H -0.188 1.188 13 H -0.187 1.187 14 N -0.192 5.192 15 O -0.028 6.028 16 C -0.165 4.165 17 C -0.201 4.201 18 S -0.069 6.069 19 C -0.192 4.192 20 H 0.080 0.920 21 H 0.125 0.875 22 H 0.075 0.925 23 H 0.096 0.904 24 H 0.134 0.866 25 H 0.094 0.906 26 H 0.158 0.842 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.450 -11.981 -0.572 12.481 hybrid contribution 0.432 2.011 -0.222 2.069 sum -3.018 -9.970 -0.795 10.447 Atomic orbital electron populations 1.22014 0.89432 1.04537 1.02838 1.19872 0.98743 0.81554 0.95729 1.28959 0.93812 0.98954 0.86200 1.72101 1.26186 1.00802 1.28403 1.22944 0.92166 0.94754 0.89436 1.18877 1.33099 0.91919 1.07106 0.88900 1.26969 0.92289 1.04846 0.95288 1.69972 1.23821 1.34107 1.16254 0.84780 0.79264 0.74456 0.78838 1.17558 1.18757 1.18686 1.75544 1.30509 0.93301 1.19870 1.85099 1.54622 1.19524 1.43540 1.22192 1.02064 0.96558 0.95706 1.24245 1.02070 0.99856 0.93964 1.87805 1.87223 1.12387 1.19455 1.24165 1.04409 0.91996 0.98603 0.91972 0.87485 0.92460 0.90355 0.86554 0.90603 0.84189 0.89265 0.91202 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 7.78 71.98 0.56 -2.80 15 2 C 0.05 1.37 0.83 -52.72 -0.04 1.33 15 3 C 0.14 6.38 6.32 88.33 0.56 6.94 15 4 N -0.54 -27.89 11.60 -304.63 -3.54 -31.42 15 5 C 0.26 15.45 7.70 134.76 1.04 16.49 15 6 C -0.47 -27.50 9.52 23.56 0.22 -27.27 15 7 H 0.09 5.19 7.85 -2.91 -0.02 5.16 15 8 C 0.02 1.26 5.50 85.28 0.47 1.73 15 9 N -0.81 -46.75 11.98 21.82 0.26 -46.49 15 10 Si 1.01 40.21 29.56 68.60 2.03 42.24 15 11 H -0.25 -9.63 7.11 99.48 0.71 -8.93 15 12 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 13 H -0.26 -9.91 7.11 99.48 0.71 -9.21 15 14 N -0.46 -27.64 10.49 -60.21 -0.63 -28.28 15 15 O 0.01 0.59 9.77 73.39 0.72 1.30 15 16 C -0.13 -3.05 5.65 30.80 0.17 -2.88 15 17 C -0.05 -1.09 7.46 72.41 0.54 -0.55 15 18 S -0.30 -7.19 23.27 -56.49 -1.31 -8.50 15 19 C -0.04 -1.24 6.40 72.41 0.46 -0.78 15 20 H 0.06 1.60 8.14 -2.39 -0.02 1.58 15 21 H 0.11 2.05 8.14 -2.39 -0.02 2.03 15 22 H 0.06 1.64 8.12 -2.39 -0.02 1.62 15 23 H 0.29 14.76 8.29 -92.71 -0.77 13.99 15 24 H 0.12 2.14 7.51 -2.38 -0.02 2.13 15 25 H 0.08 2.16 6.40 -2.39 -0.02 2.15 15 26 H 0.14 1.96 8.14 -2.38 -0.02 1.94 15 27 H 0.09 1.89 8.14 -2.38 -0.02 1.87 15 28 H 0.07 2.36 7.85 -2.39 -0.02 2.34 15 29 H 0.12 3.28 7.78 -2.38 -0.02 3.26 15 Total: -1.00 -70.93 261.53 2.67 -68.26 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 1.16 Total: 10.69 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 3.98 Total: -7.79 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -3.90 Total: -106.19 kcal Atomic # 8 Polarization: 0.59 SS G_CDS: 0.72 Total: 1.30 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Atomic # 16 Polarization: -7.19 SS G_CDS: -1.31 Total: -8.50 kcal Total: -70.93 2.67 -68.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156990.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.867 kcal (2) G-P(sol) polarization free energy of solvation -70.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds