Wall clock time and date at job start Mon Mar 30 2020 04:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99565 * 2 1 4 4 H 1.48505 * 109.47083 * 264.72544 * 3 2 1 5 5 H 1.48507 * 109.47214 * 24.72522 * 3 2 1 6 6 H 1.48496 * 109.47217 * 144.72584 * 3 2 1 7 7 C 1.37869 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00286 * 6.08171 * 7 2 1 9 9 C 1.50704 * 120.00050 * 185.79721 * 7 2 1 10 10 H 1.09006 * 109.50217 * 335.08822 * 9 7 2 11 11 C 1.53117 * 109.50727 * 215.01065 * 9 7 2 12 12 C 1.53119 * 109.16226 * 182.40545 * 11 9 7 13 13 C 1.53032 * 109.27610 * 57.65125 * 12 11 9 14 14 N 1.46844 * 109.52707 * 300.81690 * 13 12 11 15 15 C 1.38379 * 111.00352 * 185.83788 * 14 13 12 16 16 N 1.31757 * 127.91999 * 123.63204 * 15 14 13 17 17 N 1.26408 * 117.48085 * 179.77033 * 16 15 14 18 18 N 1.28563 * 119.31471 * 0.57394 * 17 16 15 19 19 S 1.70151 * 105.25633 * 359.69975 * 18 17 16 20 20 C 1.46852 * 111.19235 * 61.74852 * 14 13 12 21 21 H 0.96993 * 120.00236 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.51885 * 302.31100 * 11 9 7 23 23 H 1.09003 * 109.52087 * 62.49404 * 11 9 7 24 24 H 1.09003 * 109.49968 * 177.59442 * 12 11 9 25 25 H 1.09001 * 109.49936 * 297.67019 * 12 11 9 26 26 H 1.08997 * 109.46699 * 60.84174 * 13 12 11 27 27 H 1.09002 * 109.46192 * 180.81455 * 13 12 11 28 28 H 1.08999 * 109.46025 * 178.24582 * 20 14 13 29 29 H 1.08991 * 109.46723 * 58.27355 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6081 1.9822 -1.3942 5 1 1.3952 2.6824 0.5856 6 1 3.4865 1.4751 0.8085 7 6 2.0046 -1.1940 0.0005 8 1 1.4693 -2.1267 -0.0981 9 6 3.5059 -1.1972 0.1324 10 1 3.9041 -0.2456 -0.2198 11 6 4.0903 -2.3375 -0.7059 12 6 5.6096 -2.3711 -0.5190 13 6 5.9321 -2.5407 0.9673 14 7 5.3523 -1.4251 1.7259 15 6 5.7347 -1.4770 3.0548 16 7 6.3482 -0.5468 3.7578 17 7 6.6018 -0.8035 4.9693 18 7 6.2667 -1.9460 5.4542 19 16 5.5243 -2.7776 4.1687 20 6 3.8894 -1.4009 1.5998 21 1 -0.4850 0.8400 -0.0004 22 1 3.6621 -3.2855 -0.3802 23 1 3.8561 -2.1733 -1.7578 24 1 6.0268 -3.2075 -1.0798 25 1 6.0416 -1.4383 -0.8816 26 1 5.5119 -3.4806 1.3252 27 1 7.0133 -2.5505 1.1055 28 1 3.4869 -0.5829 2.1973 29 1 3.4786 -2.3460 1.9547 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260171875.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:46 Heat of formation + Delta-G solvation = 70.795966 kcal Electronic energy + Delta-G solvation = -15174.145937 eV Core-core repulsion = 12645.374055 eV Total energy + Delta-G solvation = -2528.771882 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.66005 -40.44033 -36.02611 -34.50328 -33.11434 -32.17270 -28.50392 -27.12618 -25.17141 -23.36113 -22.43467 -21.35754 -20.37967 -19.17915 -18.25675 -17.48466 -16.30804 -15.98160 -15.86770 -15.19144 -15.11391 -14.86372 -14.35030 -13.99268 -13.80823 -13.04322 -12.89516 -12.72923 -12.57203 -12.06829 -11.92959 -11.80984 -11.73383 -11.48001 -11.31027 -11.08903 -10.94485 -10.68837 -9.96834 -8.32920 -6.37436 -1.48556 -0.55570 -0.01798 0.72322 1.33882 1.39713 1.47923 1.83191 2.32425 3.03368 3.24572 3.50047 3.83832 3.95636 4.07466 4.33495 4.40022 4.59462 4.69216 4.81795 4.87580 4.98696 5.23515 5.40074 5.52924 5.63604 5.64243 5.70443 6.30418 6.74223 7.08369 7.30862 8.82643 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.027481 B = 0.008376 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.633004 B = 3342.110760 C = 3752.148185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.024 3.976 3 Si 0.926 3.074 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.250 1.250 7 C -0.511 4.511 8 H 0.045 0.955 9 C 0.019 3.981 10 H 0.038 0.962 11 C -0.108 4.108 12 C -0.109 4.109 13 C 0.052 3.948 14 N -0.453 5.453 15 C 0.250 3.750 16 N -0.314 5.314 17 N -0.032 5.032 18 N -0.234 5.234 19 S 0.230 5.770 20 C 0.073 3.927 21 H 0.266 0.734 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.109 0.891 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.001 -7.255 2.165 15.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.175 4.175 3 Si 0.751 3.249 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.174 1.174 7 C -0.550 4.550 8 H 0.063 0.937 9 C -0.001 4.001 10 H 0.057 0.943 11 C -0.145 4.145 12 C -0.147 4.147 13 C -0.073 4.073 14 N -0.179 5.179 15 C -0.128 4.128 16 N -0.167 5.167 17 N -0.028 5.028 18 N -0.221 5.221 19 S 0.350 5.650 20 C -0.054 4.054 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.127 0.873 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.371 -6.836 3.228 15.360 hybrid contribution -0.788 0.792 -0.256 1.146 sum 12.583 -6.044 2.972 14.272 Atomic orbital electron populations 1.70029 1.08098 1.28092 1.51736 1.25828 0.95204 1.02446 0.94021 0.86046 0.79417 0.79671 0.79754 1.18719 1.22132 1.17428 1.21173 0.91171 0.93285 1.49333 0.93668 1.19187 0.93878 0.97195 0.89853 0.94338 1.21613 0.94583 0.98164 1.00180 1.21670 0.96001 1.04056 0.92951 1.22735 1.00633 0.88936 0.95040 1.58447 1.13419 1.45886 1.00104 1.29318 0.94707 0.91761 0.96991 1.72433 1.16720 1.27659 0.99913 1.75635 1.13790 1.10137 1.03280 1.82801 1.16286 1.03506 1.19465 1.85761 1.48364 1.26667 1.04213 1.22933 0.79276 1.00968 1.02193 0.92478 0.92228 0.91882 0.87323 0.91095 0.91044 0.87969 0.92914 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.69 13.96 21.45 0.30 -55.39 15 2 C 0.02 1.30 5.47 84.65 0.46 1.76 15 3 Si 0.93 42.59 27.01 68.60 1.85 44.45 15 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 15 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 15 6 H -0.25 -11.10 6.79 99.48 0.68 -10.43 15 7 C -0.51 -26.11 8.86 25.60 0.23 -25.88 15 8 H 0.05 2.54 8.06 -2.91 -0.02 2.52 15 9 C 0.02 0.75 1.94 -11.49 -0.02 0.72 15 10 H 0.04 1.62 5.26 -2.38 -0.01 1.61 15 11 C -0.11 -3.35 5.27 30.67 0.16 -3.19 15 12 C -0.11 -2.45 6.09 30.64 0.19 -2.26 15 13 C 0.05 1.17 5.23 86.32 0.45 1.62 15 14 N -0.45 -13.93 4.72 -705.84 -3.33 -17.26 15 15 C 0.25 7.61 6.48 178.80 1.16 8.77 15 16 N -0.31 -10.75 11.70 -57.80 -0.68 -11.43 15 17 N -0.03 -1.08 12.76 37.02 0.47 -0.61 15 18 N -0.23 -6.97 13.44 37.02 0.50 -6.48 15 19 S 0.23 5.83 23.60 -56.49 -1.33 4.49 15 20 C 0.07 2.65 4.65 86.32 0.40 3.05 15 21 H 0.27 14.94 8.31 -92.71 -0.77 14.17 15 22 H 0.06 1.80 8.14 -2.38 -0.02 1.78 15 23 H 0.06 2.00 8.14 -2.39 -0.02 1.98 15 24 H 0.11 1.71 8.14 -2.39 -0.02 1.69 15 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 15 26 H 0.07 1.38 7.97 -2.39 -0.02 1.36 15 27 H 0.10 1.86 8.10 -2.39 -0.02 1.84 15 28 H 0.05 2.17 8.10 -2.39 -0.02 2.15 15 29 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 Total: -1.00 -61.12 258.70 1.94 -59.18 By element: Atomic # 1 Polarization: -2.66 SS G_CDS: 1.13 Total: -1.53 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 3.03 Total: -15.42 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -2.74 Total: -91.17 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.85 Total: 44.45 kcal Atomic # 16 Polarization: 5.83 SS G_CDS: -1.33 Total: 4.49 kcal Total: -61.12 1.94 -59.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260171875.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.972 kcal (2) G-P(sol) polarization free energy of solvation -61.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds