Wall clock time and date at job start Mon Mar 30 2020 04:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00504 * 2 1 4 4 H 1.48500 * 109.47295 * 240.00378 * 3 2 1 5 5 H 1.48502 * 109.46725 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46990 * 120.00187 * 3 2 1 7 7 C 1.37879 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00289 * 176.46285 * 7 2 1 9 9 C 1.50698 * 120.00028 * 356.46368 * 7 2 1 10 10 C 1.53003 * 110.25251 * 299.77184 * 9 7 2 11 11 N 1.46898 * 109.46764 * 303.53527 * 10 9 7 12 12 C 1.54340 * 110.28702 * 177.74282 * 9 7 2 13 13 C 1.54340 * 102.82550 * 267.58447 * 12 9 7 14 14 C 1.51186 * 105.27157 * 333.37345 * 13 12 9 15 15 C 1.35007 * 143.19045 * 197.20917 * 14 13 12 16 16 Cl 1.73604 * 125.89619 * 0.03866 * 15 14 13 17 17 N 1.36332 * 108.20504 * 180.02562 * 15 14 13 18 18 H 0.97001 * 125.63941 * 180.02562 * 17 15 14 19 19 C 1.36475 * 108.71987 * 0.02562 * 17 15 14 20 20 C 1.34862 * 108.22673 * 0.02562 * 19 17 15 21 21 H 0.97004 * 119.99585 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47072 * 63.53067 * 10 9 7 23 23 H 1.09001 * 109.47475 * 183.53471 * 10 9 7 24 24 H 1.00901 * 111.00059 * 179.88709 * 11 10 9 25 25 H 1.00899 * 110.99977 * 303.84229 * 11 10 9 26 26 H 1.09004 * 110.74245 * 149.24954 * 12 9 7 27 27 H 1.09001 * 110.89401 * 25.98951 * 12 9 7 28 28 H 1.08999 * 110.28626 * 214.42026 * 13 12 9 29 29 H 1.09006 * 110.36483 * 92.35829 * 13 12 9 30 30 H 1.07991 * 125.88613 * 179.74002 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0829 -1.1951 -0.0582 9 6 1.2531 -2.4979 0.0794 10 6 0.4389 -2.5616 1.3732 11 7 1.3324 -2.3722 2.5237 12 6 2.2347 -3.6867 0.0059 13 6 2.2725 -4.0070 -1.5034 14 6 0.9408 -3.5376 -2.0436 15 6 0.1004 -3.6496 -3.0942 16 17 0.3640 -4.6195 -4.5097 17 7 -0.9912 -2.8697 -2.8515 18 1 -1.7530 -2.7639 -3.4427 19 6 -0.8351 -2.2627 -1.6392 20 6 0.3461 -2.6552 -1.1200 21 1 -0.4850 0.8401 -0.0004 22 1 -0.3162 -1.7755 1.3664 23 1 -0.0490 -3.5334 1.4482 24 1 0.8179 -2.4082 3.3910 25 1 2.0787 -3.0512 2.5176 26 1 1.8542 -4.5371 0.5717 27 1 3.2228 -3.3976 0.3641 28 1 2.3866 -5.0797 -1.6593 29 1 3.0874 -3.4669 -1.9855 30 1 -1.5344 -1.5815 -1.1776 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260237471.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:38 Heat of formation + Delta-G solvation = 48.110128 kcal Electronic energy + Delta-G solvation = -15612.574849 eV Core-core repulsion = 13048.482778 eV Total energy + Delta-G solvation = -2564.092071 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.072 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.50914 -36.53386 -35.88679 -32.79203 -31.84113 -28.42049 -28.28498 -26.09691 -24.10666 -22.20142 -20.71135 -18.40277 -18.10486 -17.13263 -15.58126 -14.60372 -14.41997 -14.11681 -13.46878 -13.29806 -13.06328 -12.87961 -12.05177 -11.58841 -11.48406 -11.12186 -10.93164 -10.86759 -10.73326 -10.46054 -10.31042 -9.96670 -9.73690 -9.17206 -8.97540 -8.25289 -7.42639 -7.30602 -6.91466 -5.80911 -3.82033 2.46833 2.99036 3.44719 3.46710 3.52230 4.11328 4.27491 4.61207 5.44227 5.60587 5.85906 6.09888 6.13002 6.28305 6.51036 6.60938 6.68916 6.86647 6.92050 7.09222 7.18804 7.21568 7.56183 7.71860 7.90441 8.14966 8.17828 8.32327 8.46689 8.59000 8.66710 9.11116 9.78933 11.23629 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.025896 B = 0.009597 C = 0.008520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.979416 B = 2916.931988 C = 3285.494462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.074 3.926 3 Si 0.888 3.112 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.463 4.463 8 H 0.052 0.948 9 C 0.141 3.859 10 C 0.080 3.920 11 N -0.827 5.827 12 C -0.111 4.111 13 C -0.029 4.029 14 C -0.171 4.171 15 C 0.045 3.955 16 Cl -0.063 7.063 17 N -0.568 5.568 18 H 0.407 0.593 19 C 0.030 3.970 20 C -0.093 4.093 21 H 0.254 0.746 22 H 0.094 0.906 23 H -0.022 1.022 24 H 0.314 0.686 25 H 0.320 0.680 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 -6.910 -2.945 7.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.501 4.501 8 H 0.070 0.930 9 C 0.140 3.860 10 C -0.050 4.050 11 N -0.353 5.353 12 C -0.149 4.149 13 C -0.067 4.067 14 C -0.181 4.181 15 C -0.090 4.090 16 Cl -0.035 7.035 17 N -0.169 5.169 18 H 0.242 0.758 19 C -0.098 4.098 20 C -0.099 4.099 21 H 0.064 0.936 22 H 0.112 0.888 23 H -0.004 1.004 24 H 0.124 0.876 25 H 0.132 0.868 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.813 -6.113 -3.470 7.259 hybrid contribution -0.280 0.103 -0.402 0.501 sum -2.093 -6.011 -3.872 7.450 Atomic orbital electron populations 1.69802 1.05768 1.25654 1.51486 1.24713 0.94677 0.98351 0.94940 0.86745 0.79651 0.83725 0.78200 1.20977 1.21854 1.20403 1.20696 0.92087 0.89153 1.48193 0.92975 1.17168 0.88977 0.92724 0.87168 1.21903 0.95639 0.96309 0.91155 1.58592 1.14880 1.57912 1.03946 1.22417 1.00498 0.97957 0.93980 1.20251 0.92534 0.98079 0.95847 1.20033 0.98594 1.04599 0.94827 1.19489 0.93802 1.04288 0.91469 1.98290 1.95743 1.69349 1.40132 1.41844 1.17353 1.38862 1.18842 0.75775 1.21255 1.01432 1.01841 0.85270 1.20449 0.93336 0.96920 0.99236 0.93638 0.88824 1.00431 0.87610 0.86846 0.93961 0.91628 0.93492 0.91629 0.80923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.38 9.29 55.43 0.52 -22.87 16 2 C 0.07 1.96 5.18 -17.82 -0.09 1.87 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.46 -12.14 7.53 -34.44 -0.26 -12.40 16 8 H 0.05 1.40 7.58 -52.49 -0.40 1.00 16 9 C 0.14 3.29 0.36 -155.87 -0.06 3.23 16 10 C 0.08 1.81 5.46 -3.82 -0.02 1.79 16 11 N -0.83 -16.84 9.13 -10.37 -0.09 -16.93 16 12 C -0.11 -2.26 5.17 -25.33 -0.13 -2.39 16 13 C -0.03 -0.58 6.75 -26.94 -0.18 -0.76 16 14 C -0.17 -3.68 6.89 -104.53 -0.72 -4.40 16 15 C 0.04 0.87 7.78 -16.70 -0.13 0.74 16 16 Cl -0.06 -1.03 29.31 -51.86 -1.52 -2.55 16 17 N -0.57 -10.46 6.08 -9.98 -0.06 -10.52 16 18 H 0.41 5.98 8.96 -40.82 -0.37 5.61 16 19 C 0.03 0.63 10.97 -16.68 -0.18 0.45 16 20 C -0.09 -2.15 4.79 -104.57 -0.50 -2.65 16 21 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 22 H 0.09 2.36 6.39 -51.93 -0.33 2.02 16 23 H -0.02 -0.48 8.07 -51.93 -0.42 -0.90 16 24 H 0.31 5.59 9.08 -39.29 -0.36 5.23 16 25 H 0.32 5.97 8.15 -39.29 -0.32 5.65 16 26 H 0.04 0.80 7.86 -51.93 -0.41 0.39 16 27 H 0.07 1.30 7.75 -51.93 -0.40 0.90 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.17 3.73 7.39 -52.49 -0.39 3.35 16 LS Contribution 261.37 15.07 3.94 3.94 Total: -1.00 -27.91 261.37 -7.89 -35.80 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -3.37 Total: 11.12 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -2.27 Total: -14.51 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.36 Total: -50.32 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.52 Total: -2.55 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.91 -7.89 -35.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260237471.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.912 kcal (2) G-P(sol) polarization free energy of solvation -27.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds