Wall clock time and date at job start Mon Mar 30 2020 04:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00504 * 2 1 4 4 H 1.48500 * 109.47295 * 240.00378 * 3 2 1 5 5 H 1.48502 * 109.46725 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46990 * 120.00187 * 3 2 1 7 7 C 1.37879 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00289 * 176.46285 * 7 2 1 9 9 C 1.50698 * 120.00028 * 356.46368 * 7 2 1 10 10 C 1.53003 * 110.25251 * 299.77184 * 9 7 2 11 11 N 1.46898 * 109.46764 * 303.53527 * 10 9 7 12 12 C 1.54340 * 110.28702 * 177.74282 * 9 7 2 13 13 C 1.54340 * 102.82550 * 267.58447 * 12 9 7 14 14 C 1.51186 * 105.27157 * 333.37345 * 13 12 9 15 15 C 1.35007 * 143.19045 * 197.20917 * 14 13 12 16 16 Cl 1.73604 * 125.89619 * 0.03866 * 15 14 13 17 17 N 1.36332 * 108.20504 * 180.02562 * 15 14 13 18 18 H 0.97001 * 125.63941 * 180.02562 * 17 15 14 19 19 C 1.36475 * 108.71987 * 0.02562 * 17 15 14 20 20 C 1.34862 * 108.22673 * 0.02562 * 19 17 15 21 21 H 0.97004 * 119.99585 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47072 * 63.53067 * 10 9 7 23 23 H 1.09001 * 109.47475 * 183.53471 * 10 9 7 24 24 H 1.00901 * 111.00059 * 179.88709 * 11 10 9 25 25 H 1.00899 * 110.99977 * 303.84229 * 11 10 9 26 26 H 1.09004 * 110.74245 * 149.24954 * 12 9 7 27 27 H 1.09001 * 110.89401 * 25.98951 * 12 9 7 28 28 H 1.08999 * 110.28626 * 214.42026 * 13 12 9 29 29 H 1.09006 * 110.36483 * 92.35829 * 13 12 9 30 30 H 1.07991 * 125.88613 * 179.74002 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0829 -1.1951 -0.0582 9 6 1.2531 -2.4979 0.0794 10 6 0.4389 -2.5616 1.3732 11 7 1.3324 -2.3722 2.5237 12 6 2.2347 -3.6867 0.0059 13 6 2.2725 -4.0070 -1.5034 14 6 0.9408 -3.5376 -2.0436 15 6 0.1004 -3.6496 -3.0942 16 17 0.3640 -4.6195 -4.5097 17 7 -0.9912 -2.8697 -2.8515 18 1 -1.7530 -2.7639 -3.4427 19 6 -0.8351 -2.2627 -1.6392 20 6 0.3461 -2.6552 -1.1200 21 1 -0.4850 0.8401 -0.0004 22 1 -0.3162 -1.7755 1.3664 23 1 -0.0490 -3.5334 1.4482 24 1 0.8179 -2.4082 3.3910 25 1 2.0787 -3.0512 2.5176 26 1 1.8542 -4.5371 0.5717 27 1 3.2228 -3.3976 0.3641 28 1 2.3866 -5.0797 -1.6593 29 1 3.0874 -3.4669 -1.9855 30 1 -1.5344 -1.5815 -1.1776 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260237471.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:36 Heat of formation + Delta-G solvation = 30.369706 kcal Electronic energy + Delta-G solvation = -15613.344131 eV Core-core repulsion = 13048.482778 eV Total energy + Delta-G solvation = -2564.861353 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.09516 -38.17269 -37.33668 -34.48415 -33.72556 -30.10316 -29.88090 -27.81086 -25.97200 -23.84215 -22.36334 -20.09036 -19.74864 -18.77098 -17.36841 -16.47191 -16.15500 -15.73586 -15.15497 -14.90789 -14.63803 -14.47051 -13.86601 -13.40114 -13.11193 -12.73107 -12.66208 -12.52372 -12.32642 -12.25501 -11.95075 -11.74302 -11.41196 -10.99232 -10.72211 -10.23683 -9.03639 -8.94823 -8.55586 -7.77908 -5.83690 0.96869 1.42109 1.49249 1.50709 1.55960 2.41004 2.63277 2.84331 3.49673 3.94928 4.28240 4.53742 4.54948 4.70293 4.85424 4.96341 5.10222 5.20960 5.28014 5.44641 5.54528 5.64320 5.86193 5.93169 6.12270 6.33836 6.51137 6.59747 6.86779 6.93953 7.08319 7.17587 7.76891 9.21906 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.025896 B = 0.009597 C = 0.008520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.979416 B = 2916.931988 C = 3285.494462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.037 3.963 3 Si 0.928 3.072 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.472 4.472 8 H 0.037 0.963 9 C 0.131 3.869 10 C 0.092 3.908 11 N -0.836 5.836 12 C -0.105 4.105 13 C -0.026 4.026 14 C -0.196 4.196 15 C 0.051 3.949 16 Cl -0.030 7.030 17 N -0.553 5.553 18 H 0.424 0.576 19 C 0.022 3.978 20 C -0.124 4.124 21 H 0.250 0.750 22 H 0.064 0.936 23 H -0.016 1.016 24 H 0.329 0.671 25 H 0.332 0.668 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 -7.907 -3.636 8.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.162 4.162 3 Si 0.757 3.243 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.510 4.510 8 H 0.056 0.944 9 C 0.130 3.870 10 C -0.040 4.040 11 N -0.364 5.364 12 C -0.143 4.143 13 C -0.064 4.064 14 C -0.206 4.206 15 C -0.086 4.086 16 Cl -0.002 7.002 17 N -0.155 5.155 18 H 0.263 0.737 19 C -0.107 4.107 20 C -0.131 4.131 21 H 0.059 0.941 22 H 0.082 0.918 23 H 0.002 0.998 24 H 0.140 0.860 25 H 0.144 0.856 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.732 -7.116 -4.170 8.428 hybrid contribution -0.323 0.370 -0.232 0.543 sum -2.055 -6.746 -4.402 8.313 Atomic orbital electron populations 1.69905 1.05998 1.25467 1.51933 1.25178 0.95379 1.00101 0.95542 0.86117 0.78686 0.81838 0.77611 1.21389 1.21863 1.20764 1.20885 0.91570 0.90754 1.47780 0.94424 1.17236 0.89599 0.92513 0.87691 1.21639 0.95194 0.95402 0.91714 1.58484 1.15202 1.58566 1.04172 1.22344 0.99750 0.97313 0.94847 1.20232 0.91625 0.99410 0.95123 1.20318 0.99547 1.05257 0.95443 1.19647 0.93215 1.03634 0.92075 1.98303 1.95614 1.68304 1.38019 1.41743 1.17748 1.37841 1.18136 0.73675 1.21138 1.01172 1.02049 0.86324 1.20604 0.94335 0.98331 0.99849 0.94092 0.91778 0.99817 0.86004 0.85575 0.92492 0.91627 0.91119 0.92292 0.81643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.33 9.29 21.45 0.20 -47.13 16 2 C 0.04 1.97 5.18 84.66 0.44 2.41 16 3 Si 0.93 44.26 29.54 68.60 2.03 46.29 16 4 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.47 -24.70 7.53 25.60 0.19 -24.50 16 8 H 0.04 2.03 7.58 -2.91 -0.02 2.00 16 9 C 0.13 6.04 0.36 -53.06 -0.02 6.02 16 10 C 0.09 4.08 5.46 86.30 0.47 4.56 16 11 N -0.84 -33.28 9.13 -186.72 -1.70 -34.99 16 12 C -0.11 -4.13 5.17 31.50 0.16 -3.97 16 13 C -0.03 -0.99 6.75 30.46 0.21 -0.79 16 14 C -0.20 -8.15 6.89 -19.80 -0.14 -8.28 16 15 C 0.05 1.88 7.78 83.25 0.65 2.52 16 16 Cl -0.03 -0.91 29.31 -2.72 -0.08 -0.99 16 17 N -0.55 -19.42 6.08 -185.50 -1.13 -20.55 16 18 H 0.42 11.58 8.96 -92.71 -0.83 10.75 16 19 C 0.02 0.93 10.97 83.19 0.91 1.84 16 20 C -0.12 -5.68 4.79 -19.83 -0.09 -5.78 16 21 H 0.25 13.04 8.31 -92.71 -0.77 12.27 16 22 H 0.06 3.25 6.39 -2.39 -0.02 3.23 16 23 H -0.02 -0.69 8.07 -2.39 -0.02 -0.71 16 24 H 0.33 11.34 9.08 -89.69 -0.81 10.52 16 25 H 0.33 11.92 8.15 -89.70 -0.73 11.19 16 26 H 0.06 2.03 7.86 -2.38 -0.02 2.02 16 27 H 0.07 2.53 7.75 -2.39 -0.02 2.51 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.17 7.21 7.39 -2.92 -0.02 7.19 16 Total: -1.00 -57.68 261.37 0.91 -56.77 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -1.18 Total: 26.56 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 2.78 Total: -25.97 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -2.63 Total: -102.67 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -57.68 0.91 -56.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260237471.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.136 kcal (2) G-P(sol) polarization free energy of solvation -57.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds