Wall clock time and date at job start Mon Mar 30 2020 04:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99633 * 2 1 4 4 H 1.48503 * 109.47220 * 269.99582 * 3 2 1 5 5 H 1.48501 * 109.47140 * 29.99737 * 3 2 1 6 6 H 1.48501 * 109.47239 * 149.99890 * 3 2 1 7 7 C 1.37871 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00467 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99951 * 180.02562 * 7 2 1 10 10 C 1.53111 * 109.52607 * 180.02562 * 9 7 2 11 11 C 1.53035 * 109.28027 * 177.55759 * 10 9 7 12 12 N 1.46846 * 109.52218 * 300.81753 * 11 10 9 13 13 C 1.38375 * 110.99720 * 185.83808 * 12 11 10 14 14 N 1.31765 * 127.92771 * 359.94971 * 13 12 11 15 15 N 1.26402 * 117.48177 * 180.02562 * 14 13 12 16 16 N 1.28557 * 119.32066 * 359.97438 * 15 14 13 17 17 S 1.70158 * 105.25427 * 0.02562 * 16 15 14 18 18 C 1.46848 * 111.19479 * 61.74441 * 12 11 10 19 19 C 1.53036 * 109.52078 * 298.25389 * 18 12 11 20 20 H 0.96998 * 120.00224 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.57398 * 59.83746 * 9 7 2 22 22 H 1.09005 * 109.50625 * 57.61508 * 10 9 7 23 23 H 1.09007 * 109.50508 * 297.50220 * 10 9 7 24 24 H 1.09004 * 109.45957 * 180.80585 * 11 10 9 25 25 H 1.08996 * 109.46621 * 60.83810 * 11 10 9 26 26 H 1.08994 * 109.46287 * 58.27486 * 18 12 11 27 27 H 1.09008 * 109.45879 * 178.24043 * 18 12 11 28 28 H 1.09000 * 109.50548 * 299.23841 * 19 18 12 29 29 H 1.09001 * 109.49672 * 179.12417 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0234 -2.6370 0.0010 11 6 5.5525 -2.6309 -0.0600 12 7 5.9923 -1.9366 -1.2769 13 6 7.3646 -2.0259 -1.4302 14 7 8.2301 -2.6295 -0.6411 15 7 9.4493 -2.5878 -0.9723 16 7 9.7888 -1.9694 -2.0470 17 16 8.3347 -1.3721 -2.6983 18 6 5.5528 -0.5354 -1.2770 19 6 4.0237 -0.4791 -1.2524 20 1 -0.4850 0.8400 -0.0004 21 1 3.8764 -0.6778 0.8891 22 1 3.6267 -3.1638 -0.8670 23 1 3.6975 -3.1389 0.9122 24 1 5.9194 -3.6572 -0.0746 25 1 5.9488 -2.1162 0.8152 26 1 5.9491 -0.0305 -0.3961 27 1 5.9201 -0.0397 -2.1756 28 1 3.6270 -0.9718 -2.1400 29 1 3.6982 0.5611 -1.2367 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260248960.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:54 Heat of formation + Delta-G solvation = 94.261920 kcal Electronic energy + Delta-G solvation = -15098.231295 eV Core-core repulsion = 12570.476974 eV Total energy + Delta-G solvation = -2527.754321 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.50282 -39.26046 -34.88883 -32.55307 -31.51000 -30.78663 -27.69288 -25.62520 -23.53544 -22.39285 -21.07030 -19.85058 -19.14461 -17.52928 -16.88492 -16.30694 -15.01133 -14.82331 -14.29886 -14.06361 -13.47421 -13.34114 -12.99118 -12.52095 -12.38635 -12.01090 -11.53070 -11.26083 -11.01784 -10.91846 -10.52626 -10.38053 -10.33845 -10.17863 -9.89176 -9.38605 -9.19076 -8.78793 -8.67829 -6.20308 -4.20762 -0.20003 0.40976 1.19503 1.95241 3.10684 3.15784 3.21757 3.28935 4.12786 4.26053 4.61542 4.92071 4.99136 5.16836 5.30847 5.42248 5.56569 5.73667 5.92308 6.03839 6.24574 6.28482 6.50448 6.67561 6.69891 6.98628 7.31049 7.59043 8.28625 8.37621 8.84037 9.40732 10.92935 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.048273 B = 0.006610 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.897544 B = 4234.720788 C = 4572.207670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.514 4.514 8 H 0.077 0.923 9 C 0.010 3.990 10 C -0.100 4.100 11 C 0.056 3.944 12 N -0.416 5.416 13 C 0.241 3.759 14 N -0.347 5.347 15 N 0.002 4.998 16 N -0.253 5.253 17 S 0.227 5.773 18 C 0.051 3.949 19 C -0.121 4.121 20 H 0.265 0.735 21 H 0.029 0.971 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.687 -0.707 -4.080 13.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.711 3.289 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.095 0.905 9 C -0.009 4.009 10 C -0.138 4.138 11 C -0.071 4.071 12 N -0.136 5.136 13 C -0.135 4.135 14 N -0.208 5.208 15 N 0.006 4.994 16 N -0.240 5.240 17 S 0.349 5.651 18 C -0.075 4.075 19 C -0.158 4.158 20 H 0.075 0.925 21 H 0.047 0.953 22 H 0.089 0.911 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.524 -0.835 -4.707 14.344 hybrid contribution -0.121 1.107 0.656 1.292 sum 13.403 0.272 -4.051 14.004 Atomic orbital electron populations 1.69884 1.06273 1.27076 1.50219 1.25034 0.94696 0.98970 0.94445 0.86941 0.80005 0.83927 0.78006 1.20315 1.22167 1.19146 1.20958 0.88299 0.94654 1.51268 0.90528 1.19269 0.97369 0.91670 0.92630 1.21635 0.89597 0.99839 1.02715 1.22574 0.98995 0.98686 0.86846 1.58750 0.99458 1.16845 1.38553 1.28917 0.96894 0.94119 0.93598 1.72614 0.95266 1.26304 1.26637 1.75275 1.07993 1.09275 1.06899 1.82905 1.14460 1.17755 1.08920 1.85603 0.99883 1.51157 1.28413 1.22809 1.00745 0.81962 1.01937 1.22212 0.88786 1.01616 1.03216 0.92493 0.95288 0.91143 0.90638 0.89511 0.92156 0.92298 0.90104 0.90202 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 13.96 55.43 0.77 -25.23 15 2 C 0.07 1.89 5.45 -17.82 -0.10 1.80 15 3 Si 0.88 20.01 24.36 -169.99 -4.14 15.87 15 4 H -0.28 -6.01 6.89 56.52 0.39 -5.62 15 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.27 -5.69 6.53 56.52 0.37 -5.32 15 7 C -0.51 -13.16 9.14 -34.44 -0.31 -13.48 15 8 H 0.08 2.14 7.99 -52.49 -0.42 1.72 15 9 C 0.01 0.20 1.75 -91.65 -0.16 0.04 15 10 C -0.10 -1.72 5.32 -26.66 -0.14 -1.86 15 11 C 0.06 0.84 4.93 -3.84 -0.02 0.82 15 12 N -0.42 -6.15 4.72 -174.44 -0.82 -6.97 15 13 C 0.24 3.46 7.01 -86.19 -0.60 2.86 15 14 N -0.35 -5.42 10.85 30.38 0.33 -5.09 15 15 N 0.00 0.03 12.76 60.35 0.77 0.80 15 16 N -0.25 -3.65 13.44 60.35 0.81 -2.84 15 17 S 0.23 2.81 23.31 -107.50 -2.51 0.30 15 18 C 0.05 0.76 5.36 -3.83 -0.02 0.74 15 19 C -0.12 -2.21 4.84 -26.65 -0.13 -2.34 15 20 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 21 H 0.03 0.61 7.19 -51.93 -0.37 0.24 15 22 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 23 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 24 H 0.09 1.22 7.96 -51.93 -0.41 0.80 15 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 15 27 H 0.08 1.01 7.55 -51.92 -0.39 0.62 15 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 15 29 H 0.06 1.25 3.38 -51.93 -0.18 1.08 15 LS Contribution 250.82 15.07 3.78 3.78 Total: -1.00 -27.68 250.82 -5.56 -33.24 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -3.07 Total: -2.43 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.49 Total: -11.42 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 1.86 Total: -39.33 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.14 Total: 15.87 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -2.51 Total: 0.30 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.68 -5.56 -33.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260248960.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.500 kcal (2) G-P(sol) polarization free energy of solvation -27.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds