Wall clock time and date at job start Mon Mar 30 2020 04:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99633 * 2 1 4 4 H 1.48503 * 109.47220 * 269.99582 * 3 2 1 5 5 H 1.48501 * 109.47140 * 29.99737 * 3 2 1 6 6 H 1.48501 * 109.47239 * 149.99890 * 3 2 1 7 7 C 1.37871 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00467 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99951 * 180.02562 * 7 2 1 10 10 C 1.53111 * 109.52607 * 180.02562 * 9 7 2 11 11 C 1.53035 * 109.28027 * 177.55759 * 10 9 7 12 12 N 1.46846 * 109.52218 * 300.81753 * 11 10 9 13 13 C 1.38375 * 110.99720 * 185.83808 * 12 11 10 14 14 N 1.31765 * 127.92771 * 359.94971 * 13 12 11 15 15 N 1.26402 * 117.48177 * 180.02562 * 14 13 12 16 16 N 1.28557 * 119.32066 * 359.97438 * 15 14 13 17 17 S 1.70158 * 105.25427 * 0.02562 * 16 15 14 18 18 C 1.46848 * 111.19479 * 61.74441 * 12 11 10 19 19 C 1.53036 * 109.52078 * 298.25389 * 18 12 11 20 20 H 0.96998 * 120.00224 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.57398 * 59.83746 * 9 7 2 22 22 H 1.09005 * 109.50625 * 57.61508 * 10 9 7 23 23 H 1.09007 * 109.50508 * 297.50220 * 10 9 7 24 24 H 1.09004 * 109.45957 * 180.80585 * 11 10 9 25 25 H 1.08996 * 109.46621 * 60.83810 * 11 10 9 26 26 H 1.08994 * 109.46287 * 58.27486 * 18 12 11 27 27 H 1.09008 * 109.45879 * 178.24043 * 18 12 11 28 28 H 1.09000 * 109.50548 * 299.23841 * 19 18 12 29 29 H 1.09001 * 109.49672 * 179.12417 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0234 -2.6370 0.0010 11 6 5.5525 -2.6309 -0.0600 12 7 5.9923 -1.9366 -1.2769 13 6 7.3646 -2.0259 -1.4302 14 7 8.2301 -2.6295 -0.6411 15 7 9.4493 -2.5878 -0.9723 16 7 9.7888 -1.9694 -2.0470 17 16 8.3347 -1.3721 -2.6983 18 6 5.5528 -0.5354 -1.2770 19 6 4.0237 -0.4791 -1.2524 20 1 -0.4850 0.8400 -0.0004 21 1 3.8764 -0.6778 0.8891 22 1 3.6267 -3.1638 -0.8670 23 1 3.6975 -3.1389 0.9122 24 1 5.9194 -3.6572 -0.0746 25 1 5.9488 -2.1162 0.8152 26 1 5.9491 -0.0305 -0.3961 27 1 5.9201 -0.0397 -2.1756 28 1 3.6270 -0.9718 -2.1400 29 1 3.6982 0.5611 -1.2367 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260248960.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:52 Heat of formation + Delta-G solvation = 74.668547 kcal Electronic energy + Delta-G solvation = -15099.080928 eV Core-core repulsion = 12570.476974 eV Total energy + Delta-G solvation = -2528.603954 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.62077 -40.51012 -36.39148 -34.18227 -32.96144 -32.09131 -29.07490 -27.09240 -24.87888 -23.86672 -22.32162 -21.00538 -20.49931 -18.82952 -18.69289 -17.43980 -16.62599 -16.16892 -15.54721 -15.26482 -14.94276 -14.83982 -14.43675 -14.08468 -13.73978 -13.37608 -12.95633 -12.51280 -12.35230 -12.27136 -12.09402 -11.81064 -11.57178 -11.48809 -11.37024 -11.03253 -10.98056 -10.64583 -9.89417 -8.26262 -6.31061 -1.27515 -0.64048 0.13487 0.83190 1.32269 1.39861 1.48977 2.03542 2.35216 3.00333 3.08654 3.50391 3.72923 3.88264 4.03402 4.14342 4.31794 4.46271 4.59747 4.71976 4.79973 4.88555 5.06769 5.34632 5.36173 5.51655 5.68717 5.74266 6.33674 6.77070 7.19174 7.34597 8.90677 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.048273 B = 0.006610 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.897544 B = 4234.720788 C = 4572.207670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.009 3.991 3 Si 0.943 3.057 4 H -0.257 1.257 5 H -0.305 1.305 6 H -0.240 1.240 7 C -0.516 4.516 8 H 0.034 0.966 9 C 0.006 3.994 10 C -0.093 4.093 11 C 0.066 3.934 12 N -0.420 5.420 13 C 0.226 3.774 14 N -0.360 5.360 15 N -0.015 5.015 16 N -0.266 5.266 17 S 0.301 5.699 18 C 0.055 3.945 19 C -0.117 4.117 20 H 0.264 0.736 21 H 0.029 0.971 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.354 0.365 -4.986 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.188 4.188 3 Si 0.770 3.230 4 H -0.182 1.182 5 H -0.234 1.234 6 H -0.164 1.164 7 C -0.554 4.554 8 H 0.052 0.948 9 C -0.012 4.012 10 C -0.131 4.131 11 C -0.061 4.061 12 N -0.141 5.141 13 C -0.150 4.150 14 N -0.221 5.221 15 N -0.011 5.011 16 N -0.255 5.255 17 S 0.424 5.576 18 C -0.071 4.071 19 C -0.155 4.155 20 H 0.073 0.927 21 H 0.047 0.953 22 H 0.080 0.920 23 H 0.092 0.908 24 H 0.115 0.885 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.129 0.871 28 H 0.092 0.908 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.227 0.218 -5.624 17.175 hybrid contribution -0.985 0.691 0.883 1.492 sum 15.242 0.909 -4.741 15.988 Atomic orbital electron populations 1.70061 1.08454 1.27998 1.52779 1.25939 0.95376 1.03186 0.94287 0.85927 0.79371 0.78525 0.79193 1.18207 1.23364 1.16367 1.21307 0.91310 0.92937 1.49798 0.94800 1.19243 0.93839 0.94212 0.93955 1.21483 0.91628 0.97626 1.02379 1.22399 0.96691 0.99619 0.87414 1.58715 0.99969 1.16873 1.38505 1.28860 0.96540 0.94945 0.94619 1.72604 0.95494 1.26583 1.27434 1.75350 1.08026 1.10250 1.07518 1.82773 1.16261 1.17603 1.08818 1.85387 0.97583 1.48789 1.25822 1.22761 0.97853 0.82440 1.04023 1.21984 0.91671 1.00527 1.01311 0.92675 0.95268 0.91951 0.90812 0.88458 0.91712 0.91318 0.87051 0.90777 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.23 13.96 21.45 0.30 -56.93 15 2 C 0.01 0.48 5.45 84.65 0.46 0.94 15 3 Si 0.94 40.62 24.36 68.60 1.67 42.29 15 4 H -0.26 -10.16 6.89 99.48 0.69 -9.48 15 5 H -0.31 -13.64 7.11 99.48 0.71 -12.93 15 6 H -0.24 -9.22 6.53 99.48 0.65 -8.57 15 7 C -0.52 -27.04 9.14 25.60 0.23 -26.80 15 8 H 0.03 2.00 7.99 -2.91 -0.02 1.97 15 9 C 0.01 0.26 1.75 -11.46 -0.02 0.24 15 10 C -0.09 -3.13 5.32 30.64 0.16 -2.96 15 11 C 0.07 1.83 4.93 86.32 0.43 2.25 15 12 N -0.42 -11.09 4.72 -705.81 -3.33 -14.42 15 13 C 0.23 5.71 7.01 178.80 1.25 6.97 15 14 N -0.36 -10.25 10.85 -57.79 -0.63 -10.88 15 15 N -0.02 -0.44 12.76 37.02 0.47 0.03 15 16 N -0.27 -6.92 13.44 37.02 0.50 -6.42 15 17 S 0.30 6.26 23.31 -56.49 -1.32 4.94 15 18 C 0.05 1.41 5.36 86.33 0.46 1.87 15 19 C -0.12 -4.00 4.84 30.65 0.15 -3.86 15 20 H 0.26 14.95 8.31 -92.71 -0.77 14.18 15 21 H 0.03 1.18 7.19 -2.39 -0.02 1.16 15 22 H 0.06 2.18 8.14 -2.38 -0.02 2.16 15 23 H 0.07 2.46 8.14 -2.38 -0.02 2.44 15 24 H 0.10 2.51 7.96 -2.38 -0.02 2.49 15 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 15 26 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 27 H 0.11 2.21 7.55 -2.38 -0.02 2.19 15 28 H 0.07 2.60 8.14 -2.39 -0.02 2.58 15 29 H 0.06 2.06 3.38 -2.39 -0.01 2.05 15 Total: -1.00 -60.98 250.82 1.89 -59.09 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.09 Total: 3.64 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 3.13 Total: -21.35 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -2.69 Total: -88.62 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 1.67 Total: 42.29 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.32 Total: 4.94 kcal Total: -60.98 1.89 -59.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260248960.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.763 kcal (2) G-P(sol) polarization free energy of solvation -60.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds