Wall clock time and date at job start Mon Mar 30 2020 03:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30693 * 1 3 3 Si 1.86803 * 119.99766 * 2 1 4 4 H 1.48498 * 109.47079 * 274.97694 * 3 2 1 5 5 H 1.48500 * 109.47355 * 34.97862 * 3 2 1 6 6 H 1.48510 * 109.46927 * 154.97808 * 3 2 1 7 7 C 1.40241 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00463 * 186.04799 * 7 2 1 9 9 C 1.40065 * 120.00160 * 6.05213 * 7 2 1 10 10 N 1.32121 * 126.21183 * 354.28368 * 9 7 2 11 11 N 1.26264 * 115.91058 * 179.97438 * 10 9 7 12 12 C 1.30069 * 117.85866 * 0.02562 * 11 10 9 13 13 C 1.50708 * 125.43801 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.48024 * 165.00315 * 13 12 11 15 15 C 1.53092 * 109.47586 * 285.02743 * 13 12 11 16 16 C 1.53184 * 109.15963 * 177.58925 * 15 13 12 17 17 C 1.53177 * 109.03542 * 303.01693 * 16 15 13 18 18 C 1.53088 * 109.16269 * 56.98084 * 17 16 15 19 19 O 1.42896 * 109.41634 * 302.39188 * 18 17 16 20 20 S 1.71236 * 109.13477 * 0.02562 * 12 11 10 21 21 H 0.97003 * 120.00146 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.52625 * 297.49224 * 15 13 12 23 23 H 1.08995 * 109.53019 * 57.68441 * 15 13 12 24 24 H 1.08999 * 109.54066 * 62.88836 * 16 15 13 25 25 H 1.08999 * 109.54053 * 183.15192 * 16 15 13 26 26 H 1.09003 * 109.51903 * 176.88985 * 17 16 15 27 27 H 1.08999 * 109.52272 * 297.01065 * 17 16 15 28 28 H 1.09001 * 109.47926 * 62.37306 * 18 17 16 29 29 H 1.08998 * 109.48130 * 182.40503 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.3832 2.1072 -1.3948 5 1 1.4949 2.6201 0.8026 6 1 3.5872 1.4121 0.5922 7 6 2.0081 -1.2145 0.0005 8 1 3.0837 -1.2172 0.0991 9 6 1.3137 -2.4242 -0.1268 10 7 0.0009 -2.5721 -0.1483 11 7 -0.4189 -3.7564 -0.2723 12 6 0.4635 -4.7075 -0.3654 13 6 0.1542 -6.1747 -0.5173 14 1 1.0524 -6.7045 -0.8345 15 6 -0.3236 -6.7371 0.8240 16 6 -0.6931 -8.2131 0.6473 17 6 -1.7587 -8.3339 -0.4464 18 6 -1.2255 -7.7097 -1.7386 19 8 -0.8719 -6.3465 -1.4969 20 16 2.0328 -4.0269 -0.2865 21 1 -0.4850 0.8401 -0.0004 22 1 0.4738 -6.6470 1.5617 23 1 -1.1979 -6.1807 1.1618 24 1 0.1926 -8.7785 0.3576 25 1 -1.0870 -8.6052 1.5850 26 1 -1.9875 -9.3859 -0.6174 27 1 -2.6624 -7.8107 -0.1339 28 1 -0.3455 -8.2599 -2.0719 29 1 -1.9956 -7.7545 -2.5087 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260264788.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:44 Heat of formation + Delta-G solvation = -36.203292 kcal Electronic energy + Delta-G solvation = -14795.204763 eV Core-core repulsion = 12229.500295 eV Total energy + Delta-G solvation = -2565.704469 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -40.92140 -39.96459 -36.07666 -34.55267 -33.32144 -31.27070 -28.70554 -26.33088 -25.07797 -24.12564 -21.82349 -20.97975 -19.26853 -18.74768 -17.16769 -17.00136 -16.53742 -15.91176 -15.65592 -15.32142 -14.99875 -14.58624 -13.86156 -13.73150 -13.56518 -13.25852 -12.99803 -12.94345 -12.37357 -12.06565 -11.99365 -11.73752 -11.56220 -11.29267 -10.72109 -10.50104 -10.15164 -10.12847 -9.90188 -8.81271 -6.93488 0.37608 0.85656 1.22690 1.39731 1.49873 1.60312 2.13054 2.31937 2.98664 3.14475 3.72834 3.90430 3.95710 4.05058 4.10549 4.27795 4.52094 4.64449 4.72203 4.84165 4.93079 5.01329 5.04551 5.09192 5.19306 5.33581 5.44280 5.88757 6.01897 6.33066 6.38823 8.06643 8.76132 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.061336 B = 0.005814 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.391789 B = 4814.523934 C = 4968.719105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.018 3.982 3 Si 1.017 2.983 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.240 1.240 7 C -0.379 4.379 8 H 0.122 0.878 9 C 0.136 3.864 10 N -0.391 5.391 11 N -0.247 5.247 12 C -0.144 4.144 13 C 0.206 3.794 14 H 0.074 0.926 15 C -0.135 4.135 16 C -0.113 4.113 17 C -0.151 4.151 18 C 0.048 3.952 19 O -0.402 6.402 20 S -0.069 6.069 21 H 0.299 0.701 22 H 0.071 0.929 23 H 0.046 0.954 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.919 -9.234 0.193 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.209 4.209 3 Si 0.833 3.167 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.162 1.162 7 C -0.423 4.423 8 H 0.139 0.861 9 C -0.113 4.113 10 N -0.241 5.241 11 N -0.087 5.087 12 C -0.425 4.425 13 C 0.144 3.856 14 H 0.091 0.909 15 C -0.175 4.175 16 C -0.151 4.151 17 C -0.189 4.189 18 C -0.028 4.028 19 O -0.321 6.321 20 S 0.175 5.825 21 H 0.111 0.889 22 H 0.090 0.910 23 H 0.065 0.935 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.123 0.877 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.296 -9.002 0.102 9.291 hybrid contribution 0.050 0.559 0.062 0.564 sum 2.346 -8.443 0.164 8.765 Atomic orbital electron populations 1.70060 1.09956 1.31891 1.24378 1.27502 0.95904 1.05404 0.92126 0.84684 0.79082 0.72959 0.79975 1.18157 1.18579 1.16243 1.19748 0.96593 0.88243 1.37704 0.86058 1.26575 0.91495 0.95512 0.97711 1.72790 1.09081 1.08783 1.33456 1.70647 1.33843 0.96099 1.08065 1.27533 0.90982 1.00721 1.23285 1.19900 0.90179 0.86030 0.89444 0.90874 1.22099 1.01307 0.97800 0.96258 1.21617 0.99734 0.93597 1.00138 1.22179 0.98706 1.02619 0.95371 1.22885 1.00456 0.81513 0.97931 1.88050 1.56954 1.27776 1.59337 1.83277 1.12713 1.06518 1.79988 0.88932 0.90993 0.93497 0.90006 0.89695 0.87708 0.92465 0.91732 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.45 11.95 21.88 0.26 -39.19 15 2 C 0.02 0.87 5.49 85.35 0.47 1.34 15 3 Si 1.02 34.15 29.57 68.60 2.03 36.18 15 4 H -0.26 -8.36 7.11 99.48 0.71 -7.65 15 5 H -0.26 -8.37 7.11 99.48 0.71 -7.67 15 6 H -0.24 -7.39 7.11 99.48 0.71 -6.68 15 7 C -0.38 -19.51 9.42 23.20 0.22 -19.29 15 8 H 0.12 5.49 7.86 -2.91 -0.02 5.47 15 9 C 0.14 7.73 7.18 85.09 0.61 8.35 15 10 N -0.39 -24.39 9.97 -54.05 -0.54 -24.93 15 11 N -0.25 -14.67 11.59 -50.52 -0.59 -15.25 15 12 C -0.14 -7.31 6.42 88.37 0.57 -6.75 15 13 C 0.21 8.26 3.17 29.88 0.09 8.36 15 14 H 0.07 2.62 8.14 -2.39 -0.02 2.60 15 15 C -0.14 -4.61 5.40 30.69 0.17 -4.44 15 16 C -0.11 -2.67 6.03 30.71 0.19 -2.48 15 17 C -0.15 -3.43 6.14 30.68 0.19 -3.25 15 18 C 0.05 1.31 6.84 72.01 0.49 1.80 15 19 O -0.40 -16.31 10.38 -148.98 -1.55 -17.85 15 20 S -0.07 -3.38 23.24 -56.49 -1.31 -4.69 15 21 H 0.30 13.99 8.29 -92.71 -0.77 13.22 15 22 H 0.07 2.36 8.14 -2.39 -0.02 2.35 15 23 H 0.05 1.85 8.14 -2.39 -0.02 1.83 15 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 15 25 H 0.08 1.69 8.14 -2.39 -0.02 1.67 15 26 H 0.10 1.64 8.14 -2.39 -0.02 1.62 15 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 15 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 15 29 H 0.10 2.44 8.14 -2.39 -0.02 2.42 15 Total: -1.00 -70.86 263.52 2.45 -68.41 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.15 Total: 13.69 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 2.99 Total: -16.36 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -0.86 Total: -79.37 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -1.55 Total: -17.85 kcal Atomic # 14 Polarization: 34.15 SS G_CDS: 2.03 Total: 36.18 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.31 Total: -4.69 kcal Total: -70.86 2.45 -68.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260264788.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.207 kcal (2) G-P(sol) polarization free energy of solvation -70.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds