Wall clock time and date at job start Mon Mar 30 2020 03:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30500 * 1 3 3 Si 1.86801 * 120.00274 * 2 1 4 4 H 1.48497 * 109.47572 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46935 * 300.00008 * 3 2 1 6 6 H 1.48500 * 109.47054 * 59.99569 * 3 2 1 7 7 C 1.40466 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00200 * 179.97438 * 7 2 1 9 9 C 1.40341 * 119.99985 * 0.02562 * 7 2 1 10 10 N 1.33327 * 126.79348 * 180.28526 * 9 7 2 11 11 C 1.33568 * 105.51395 * 180.14289 * 10 9 7 12 12 C 1.50697 * 126.07331 * 179.85406 * 11 10 9 13 13 C 1.52582 * 109.22774 * 119.71073 * 12 11 10 14 14 C 1.53101 * 109.87662 * 191.04718 * 13 12 11 15 15 S 1.81761 * 108.83112 * 296.84405 * 14 13 12 16 16 C 1.81752 * 102.16003 * 53.40269 * 15 14 13 17 17 C 1.52583 * 109.22641 * 240.95024 * 12 11 10 18 18 N 1.30450 * 107.85248 * 359.58586 * 11 10 9 19 19 O 1.21280 * 110.68838 * 0.26353 * 18 11 10 20 20 H 0.97005 * 120.00324 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.22382 * 0.31164 * 12 11 10 22 22 H 1.09002 * 109.39091 * 311.14629 * 13 12 11 23 23 H 1.08996 * 109.39211 * 70.94714 * 13 12 11 24 24 H 1.08994 * 109.57919 * 56.73075 * 14 13 12 25 25 H 1.09003 * 109.57483 * 177.12310 * 14 13 12 26 26 H 1.09004 * 109.57599 * 186.87682 * 16 15 14 27 27 H 1.08995 * 109.67918 * 66.55480 * 16 15 14 28 28 H 1.09003 * 109.38735 * 289.14986 * 17 12 11 29 29 H 1.08998 * 109.39008 * 48.95016 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2391 1.6177 0.0000 4 1 3.6990 1.3464 -0.0006 5 1 1.8803 2.3964 -1.2126 6 1 1.8803 2.3964 1.2125 7 6 2.0073 -1.2165 0.0005 8 1 3.0873 -1.2165 0.0001 9 6 1.3056 -2.4319 0.0005 10 7 1.8310 -3.6573 0.0063 11 6 0.7889 -4.4928 0.0005 12 6 0.8585 -5.9981 0.0005 13 6 0.1616 -6.5334 1.2479 14 6 0.4568 -8.0270 1.4086 15 16 -0.2405 -8.9191 -0.0133 16 6 0.4861 -8.0258 -1.4195 17 6 0.1897 -6.5320 -1.2628 18 7 -0.2999 -3.7742 0.0006 19 8 -0.0325 -2.5912 0.0007 20 1 -0.4851 0.8401 -0.0004 21 1 1.9031 -6.3091 0.0116 22 1 0.5252 -5.9964 2.1241 23 1 -0.9140 -6.3852 1.1533 24 1 1.5346 -8.1843 1.4470 25 1 -0.0007 -8.3929 2.3278 26 1 0.0480 -8.3895 -2.3490 27 1 1.5643 -8.1843 -1.4374 28 1 -0.8878 -6.3823 -1.1927 29 1 0.5739 -5.9953 -2.1301 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260306029.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:26 Heat of formation + Delta-G solvation = 8.504087 kcal Electronic energy + Delta-G solvation = -14933.562785 eV Core-core repulsion = 12369.796973 eV Total energy + Delta-G solvation = -2563.765811 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.06662 -38.60903 -36.08662 -35.16082 -32.59821 -32.38687 -28.82293 -28.24399 -24.09660 -23.67147 -23.50458 -21.52239 -19.47321 -17.85882 -17.84200 -17.42072 -16.94465 -15.80672 -15.66130 -15.19023 -14.84093 -14.40490 -14.14515 -13.80103 -13.71788 -13.58561 -13.10524 -12.85474 -12.54178 -12.37534 -11.96391 -11.94996 -11.90492 -11.64392 -11.25341 -10.98956 -10.73491 -10.29493 -8.97544 -8.69768 -7.11312 0.79748 0.97140 1.39844 1.51657 1.52864 1.61412 2.00196 2.14006 2.99322 3.08049 3.36826 3.50644 3.83824 3.90699 3.97814 4.19010 4.23500 4.33332 4.45746 4.65066 4.70724 4.78292 4.88545 4.92099 5.04991 5.20038 5.52382 5.85650 6.06625 6.27774 6.43630 8.04813 8.30209 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.071588 B = 0.005159 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.033094 B = 5425.958027 C = 5432.957073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.028 3.972 3 Si 1.021 2.979 4 H -0.247 1.247 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.434 4.434 8 H 0.121 0.879 9 C 0.269 3.731 10 N -0.642 5.642 11 C 0.174 3.826 12 C 0.010 3.990 13 C -0.102 4.102 14 C -0.064 4.064 15 S -0.286 6.286 16 C -0.065 4.065 17 C -0.103 4.103 18 N -0.490 5.490 19 O 0.010 5.990 20 H 0.306 0.694 21 H 0.093 0.907 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.100 0.900 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.088 -7.717 -0.021 7.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.194 4.194 3 Si 0.838 3.162 4 H -0.170 1.170 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.471 4.471 8 H 0.139 0.861 9 C 0.081 3.919 10 N -0.387 5.387 11 C -0.100 4.100 12 C -0.010 4.010 13 C -0.142 4.142 14 C -0.212 4.212 15 S -0.061 6.061 16 C -0.213 4.213 17 C -0.142 4.142 18 N -0.224 5.224 19 O -0.032 6.032 20 H 0.117 0.883 21 H 0.112 0.888 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.119 0.881 25 H 0.143 0.857 26 H 0.143 0.857 27 H 0.119 0.881 28 H 0.085 0.915 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.751 -9.058 -0.021 9.089 hybrid contribution 0.853 2.036 0.005 2.208 sum 1.604 -7.022 -0.017 7.203 Atomic orbital electron populations 1.69691 1.09743 1.32912 1.29849 1.27390 0.95912 1.05814 0.90247 0.84575 0.79067 0.72951 0.79626 1.17030 1.18079 1.18075 1.19162 0.95707 0.86158 1.46123 0.86123 1.24833 0.80353 0.95181 0.91539 1.72234 1.29451 0.98823 1.38223 1.25601 0.85404 0.99566 0.99453 1.19431 1.01604 0.83055 0.96912 1.21599 1.00970 0.95175 0.96491 1.23433 1.04657 0.94581 0.98567 1.86749 1.68303 1.47276 1.03725 1.23427 1.04468 0.94563 0.98793 1.21597 1.01102 0.95194 0.96351 1.74225 1.25485 0.90620 1.32101 1.85484 1.25995 1.18964 1.72712 0.88262 0.88849 0.91849 0.91454 0.88143 0.85746 0.85744 0.88148 0.91467 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.51 12.06 21.91 0.26 -40.25 15 2 C 0.03 1.35 5.50 85.43 0.47 1.82 15 3 Si 1.02 34.40 29.56 68.60 2.03 36.43 15 4 H -0.25 -7.97 7.11 99.48 0.71 -7.27 15 5 H -0.26 -8.15 7.11 99.48 0.71 -7.45 15 6 H -0.26 -8.15 7.11 99.48 0.71 -7.45 15 7 C -0.43 -23.16 9.48 23.33 0.22 -22.94 15 8 H 0.12 6.03 7.85 -2.91 -0.02 6.00 15 9 C 0.27 15.75 7.82 85.06 0.66 16.42 15 10 N -0.64 -35.83 11.61 -305.22 -3.54 -39.37 15 11 C 0.17 8.76 6.58 138.61 0.91 9.67 15 12 C 0.01 0.38 2.39 -11.82 -0.03 0.35 15 13 C -0.10 -3.29 5.04 30.49 0.15 -3.14 15 14 C -0.06 -1.53 6.45 72.02 0.46 -1.07 15 15 S -0.29 -7.15 22.33 -56.49 -1.26 -8.42 15 16 C -0.06 -1.54 6.45 72.01 0.46 -1.07 15 17 C -0.10 -3.29 5.03 30.49 0.15 -3.14 15 18 N -0.49 -27.18 12.15 -56.62 -0.69 -27.87 15 19 O 0.01 0.59 9.74 64.23 0.63 1.21 15 20 H 0.31 13.54 8.29 -92.70 -0.77 12.77 15 21 H 0.09 3.27 8.08 -2.38 -0.02 3.25 15 22 H 0.06 2.17 8.08 -2.39 -0.02 2.15 15 23 H 0.07 2.34 8.06 -2.39 -0.02 2.33 15 24 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 25 H 0.12 2.49 8.14 -2.39 -0.02 2.47 15 26 H 0.12 2.49 8.14 -2.39 -0.02 2.47 15 27 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 28 H 0.07 2.34 8.06 -2.39 -0.02 2.32 15 29 H 0.06 2.17 8.09 -2.39 -0.02 2.15 15 Total: -1.00 -65.47 262.59 2.06 -63.41 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 1.16 Total: 17.94 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 3.48 Total: -3.09 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -3.97 Total: -107.49 kcal Atomic # 8 Polarization: 0.59 SS G_CDS: 0.63 Total: 1.21 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 2.03 Total: 36.43 kcal Atomic # 16 Polarization: -7.15 SS G_CDS: -1.26 Total: -8.42 kcal Total: -65.47 2.06 -63.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260306029.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.919 kcal (2) G-P(sol) polarization free energy of solvation -65.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds