Wall clock time and date at job start Mon Mar 30 2020 03:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86799 * 120.00166 * 2 1 4 4 H 1.48496 * 109.47384 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47612 * 300.00516 * 3 2 1 6 6 H 1.48508 * 109.46896 * 60.00354 * 3 2 1 7 7 C 1.39974 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99775 * 180.02562 * 7 2 1 9 9 C 1.41732 * 119.99829 * 359.97438 * 7 2 1 10 10 N 1.31859 * 126.59295 * 0.02562 * 9 7 2 11 11 O 1.21269 * 109.90545 * 179.70694 * 10 9 7 12 12 C 1.33801 * 110.33196 * 0.46882 * 11 10 9 13 13 C 1.50700 * 126.28549 * 179.79159 * 12 11 10 14 14 H 1.09003 * 109.30939 * 179.44580 * 13 12 11 15 15 C 1.52583 * 109.38836 * 59.69731 * 13 12 11 16 16 C 1.52582 * 110.72773 * 169.17449 * 15 13 12 17 17 C 1.53101 * 109.87662 * 70.72388 * 16 15 13 18 18 S 1.81761 * 108.83112 * 296.84405 * 17 16 15 19 19 C 1.53094 * 109.39288 * 299.20170 * 13 12 11 20 20 N 1.30749 * 107.43050 * 359.53814 * 12 11 10 21 21 H 0.97002 * 119.99965 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.22660 * 48.85283 * 15 13 12 23 23 H 1.09004 * 109.22168 * 289.49409 * 15 13 12 24 24 H 1.09002 * 109.39091 * 190.82299 * 16 15 13 25 25 H 1.08996 * 109.39211 * 310.62384 * 16 15 13 26 26 H 1.08994 * 109.57919 * 56.73075 * 17 16 15 27 27 H 1.09003 * 109.57483 * 177.12310 * 17 16 15 28 28 H 1.09004 * 109.57464 * 302.97914 * 19 13 12 29 29 H 1.08994 * 109.57767 * 63.36354 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8827 2.3966 -1.2124 6 1 1.8827 2.3964 1.2126 7 6 2.0072 -1.2122 -0.0005 8 1 3.0872 -1.2122 -0.0001 9 6 1.2985 -2.4396 -0.0005 10 7 -0.0114 -2.5910 -0.0005 11 8 -0.2907 -3.7710 -0.0064 12 6 0.8232 -4.5124 -0.0005 13 6 0.8925 -6.0178 -0.0004 14 1 1.9367 -6.3306 -0.0048 15 6 0.1970 -6.5570 -1.2469 16 6 0.4759 -8.0472 -1.4190 17 6 -0.2659 -8.8434 -0.3420 18 16 0.3798 -8.3671 1.2889 19 6 0.2053 -6.5583 1.2564 20 7 1.8404 -3.6910 -0.0005 21 1 -0.4850 0.8401 0.0004 22 1 0.5622 -6.0201 -2.1223 23 1 -0.8778 -6.4014 -1.1538 24 1 0.1365 -8.3676 -2.4040 25 1 1.5471 -8.2277 -1.3290 26 1 -1.3318 -8.6217 -0.3931 27 1 -0.1046 -9.9098 -0.5001 28 1 0.6748 -6.1301 2.1421 29 1 -0.8518 -6.2936 1.2371 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260309061.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:29 Heat of formation + Delta-G solvation = 39.558760 kcal Electronic energy + Delta-G solvation = -14902.633374 eV Core-core repulsion = 12340.214194 eV Total energy + Delta-G solvation = -2562.419180 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.27943 -37.20099 -34.41397 -33.19201 -32.09428 -29.34089 -27.25869 -26.50676 -23.70943 -21.89119 -21.43729 -20.04893 -17.41068 -16.63248 -16.07764 -15.68470 -15.08744 -14.78636 -14.58205 -13.90179 -13.51156 -13.13111 -12.99388 -12.83690 -11.63912 -11.44016 -11.42014 -11.34334 -11.09218 -10.85118 -10.63880 -10.36163 -10.27167 -10.09300 -9.80466 -9.27121 -9.08270 -8.14392 -7.70303 -6.64683 -4.65449 1.72817 2.42730 2.86273 3.01829 3.10679 3.17296 3.96911 4.02754 4.23691 4.56574 4.70877 4.82362 4.95410 5.18657 5.30427 5.31871 5.42215 5.57530 5.64764 5.76351 5.87956 6.00383 6.14234 6.33012 6.60452 6.90800 7.24489 7.72695 8.29436 8.49896 8.83641 10.29969 10.42623 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.065526 B = 0.005261 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.206899 B = 5320.848127 C = 5354.110090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.069 3.931 3 Si 0.924 3.076 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.434 4.434 8 H 0.092 0.908 9 C 0.288 3.712 10 N -0.423 5.423 11 O 0.017 5.983 12 C 0.120 3.880 13 C 0.022 3.978 14 H 0.111 0.889 15 C -0.125 4.125 16 C -0.118 4.118 17 C -0.084 4.084 18 S -0.265 6.265 19 C -0.072 4.072 20 N -0.515 5.515 21 H 0.277 0.723 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 -12.973 -1.397 13.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.152 4.152 3 Si 0.748 3.252 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.475 4.475 8 H 0.110 0.890 9 C 0.036 3.964 10 N -0.151 5.151 11 O -0.023 6.023 12 C -0.105 4.105 13 C 0.000 4.000 14 H 0.129 0.871 15 C -0.163 4.163 16 C -0.157 4.157 17 C -0.232 4.232 18 S -0.038 6.038 19 C -0.221 4.221 20 N -0.256 5.256 21 H 0.088 0.912 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.909 -12.889 -0.555 12.933 hybrid contribution -0.156 1.536 -0.897 1.785 sum -1.066 -11.353 -1.452 11.495 Atomic orbital electron populations 1.69877 1.07176 1.28624 1.34497 1.25846 0.94983 1.01142 0.93182 0.86009 0.80506 0.80317 0.78395 1.18353 1.19904 1.19898 1.18462 0.94257 0.86204 1.48552 0.88994 1.22460 0.86063 0.91555 0.96294 1.75586 1.16025 0.90259 1.33263 1.85188 1.34593 1.13926 1.68629 1.27764 0.84045 0.96602 1.02062 1.19616 1.02276 0.83661 0.94451 0.87106 1.21594 1.01548 0.95372 0.97824 1.21723 1.01475 0.94246 0.98288 1.23494 1.02544 1.03278 0.93869 1.86831 1.85089 1.07751 1.24095 1.23534 1.04788 0.92398 1.01404 1.72191 1.29424 1.00966 1.22991 0.91214 0.90299 0.90817 0.90462 0.90278 0.89671 0.87872 0.87212 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.94 11.98 55.55 0.67 -21.28 15 2 C 0.07 1.88 5.49 -17.37 -0.10 1.78 15 3 Si 0.92 19.74 29.56 -169.99 -5.02 14.71 15 4 H -0.26 -5.42 7.11 56.52 0.40 -5.01 15 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 7 C -0.43 -12.49 9.52 -37.60 -0.36 -12.85 15 8 H 0.09 2.52 7.85 -52.49 -0.41 2.11 15 9 C 0.29 8.43 7.70 -156.99 -1.21 7.22 15 10 N -0.42 -12.38 10.49 30.27 0.32 -12.06 15 11 O 0.02 0.44 11.28 17.71 0.20 0.64 15 12 C 0.12 2.65 6.93 -12.92 -0.09 2.56 15 13 C 0.02 0.35 2.50 -91.94 -0.23 0.12 15 14 H 0.11 1.73 8.06 -51.93 -0.42 1.31 15 15 C -0.13 -1.64 4.91 -27.16 -0.13 -1.77 15 16 C -0.12 -1.17 5.76 -26.89 -0.15 -1.33 15 17 C -0.08 -0.80 6.45 37.21 0.24 -0.56 15 18 S -0.27 -3.29 22.33 -107.50 -2.40 -5.69 15 19 C -0.07 -1.03 5.71 37.21 0.21 -0.82 15 20 N -0.51 -13.46 11.62 -10.83 -0.13 -13.59 15 21 H 0.28 7.10 8.29 -40.82 -0.34 6.76 15 22 H 0.08 1.11 8.08 -51.93 -0.42 0.69 15 23 H 0.07 0.96 8.08 -51.93 -0.42 0.54 15 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 15 25 H 0.08 0.79 8.06 -51.93 -0.42 0.37 15 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 15 28 H 0.11 1.64 8.14 -51.93 -0.42 1.22 15 29 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 LS Contribution 262.67 15.07 3.96 3.96 Total: -1.00 -32.17 262.67 -7.56 -39.74 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -3.34 Total: -0.78 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.82 Total: -5.65 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.86 Total: -46.92 kcal Atomic # 8 Polarization: 0.44 SS G_CDS: 0.20 Total: 0.64 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -2.40 Total: -5.69 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.17 -7.56 -39.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260309061.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.296 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds