Wall clock time and date at job start Mon Mar 30 2020 03:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86802 * 119.99976 * 2 1 4 4 H 1.48502 * 109.47003 * 269.99939 * 3 2 1 5 5 H 1.48508 * 109.47075 * 29.99561 * 3 2 1 6 6 H 1.48499 * 109.47298 * 149.99805 * 3 2 1 7 7 C 1.39973 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00380 * 180.02562 * 7 2 1 9 9 C 1.41734 * 119.99741 * 0.02562 * 7 2 1 10 10 N 1.31863 * 126.58969 * 0.02562 * 9 7 2 11 11 O 1.21272 * 109.90224 * 179.97438 * 10 9 7 12 12 C 1.33804 * 110.33707 * 0.02562 * 11 10 9 13 13 C 1.50694 * 126.28676 * 179.73414 * 12 11 10 14 14 H 1.09005 * 109.38991 * 180.02562 * 13 12 11 15 15 C 1.52584 * 109.39151 * 299.82694 * 13 12 11 16 16 C 1.52624 * 110.70207 * 190.92406 * 15 13 12 17 17 C 1.53094 * 109.87359 * 289.18112 * 16 15 13 18 18 S 1.81748 * 108.84015 * 63.06320 * 17 16 15 19 19 C 1.53091 * 109.39099 * 60.22589 * 13 12 11 20 20 N 1.30749 * 107.42369 * 0.02562 * 12 11 10 21 21 H 0.96996 * 120.00086 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.22240 * 311.14746 * 15 13 12 23 23 H 1.09001 * 109.22651 * 70.50197 * 15 13 12 24 24 H 1.09006 * 109.39882 * 169.07625 * 16 15 13 25 25 H 1.08996 * 109.38408 * 49.27638 * 16 15 13 26 26 H 1.09005 * 109.57336 * 303.25463 * 17 16 15 27 27 H 1.09003 * 109.57837 * 182.87357 * 17 16 15 28 28 H 1.09004 * 109.57630 * 296.63209 * 19 13 12 29 29 H 1.09000 * 109.57875 * 57.01818 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4387 2.6528 0.7000 6 1 3.5389 1.4403 0.7001 7 6 2.0073 -1.2121 0.0005 8 1 3.0873 -1.2121 0.0010 9 6 1.2987 -2.4396 0.0005 10 7 -0.0112 -2.5910 -0.0004 11 8 -0.2904 -3.7711 -0.0006 12 6 0.8234 -4.5125 0.0008 13 6 0.8928 -6.0179 0.0066 14 1 1.9366 -6.3320 0.0069 15 6 0.2028 -6.5519 1.2584 16 6 0.4850 -8.0413 1.4362 17 6 -0.2614 -8.8437 0.3672 18 16 0.3725 -8.3725 -1.2697 19 6 0.1981 -6.5636 -1.2437 20 7 1.8406 -3.6910 0.0024 21 1 -0.4850 0.8400 -0.0004 22 1 0.5718 -6.0113 2.1299 23 1 -0.8725 -6.3967 1.1694 24 1 0.1516 -8.3574 2.4247 25 1 1.5559 -8.2204 1.3411 26 1 -1.3275 -8.6234 0.4233 27 1 -0.0977 -9.9090 0.5295 28 1 -0.8590 -6.2989 -1.2190 29 1 0.6621 -6.1392 -2.1340 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260309064.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:30 Heat of formation + Delta-G solvation = 17.681179 kcal Electronic energy + Delta-G solvation = -14903.481897 eV Core-core repulsion = 12340.114035 eV Total energy + Delta-G solvation = -2563.367863 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.33453 -38.37542 -36.47088 -35.06740 -33.48093 -31.14291 -28.64947 -28.27138 -25.07552 -23.95464 -22.73142 -21.60177 -19.14913 -18.22163 -17.92719 -17.58252 -16.51491 -16.13340 -15.87120 -15.28750 -14.85465 -14.53854 -14.03984 -13.96564 -13.33306 -13.13661 -13.11216 -12.67846 -12.47442 -12.23900 -12.21858 -12.01874 -11.92898 -11.69687 -11.28508 -11.15703 -10.72559 -10.17067 -8.70232 -8.67513 -6.83025 0.68181 0.96438 1.32803 1.35762 1.52594 1.53537 2.01493 2.17929 2.59330 3.17774 3.27726 3.63662 3.77558 3.86515 4.06649 4.12776 4.38738 4.51430 4.57054 4.62166 4.78937 4.89503 4.97449 5.05255 5.12025 5.20094 5.29285 5.70832 6.13736 6.40860 6.72217 8.29721 8.40872 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.065586 B = 0.005259 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.816409 B = 5322.690770 C = 5354.053429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.023 3.977 3 Si 1.010 2.990 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.253 1.253 7 C -0.471 4.471 8 H 0.093 0.907 9 C 0.259 3.741 10 N -0.461 5.461 11 O 0.013 5.987 12 C 0.146 3.854 13 C 0.025 3.975 14 H 0.116 0.884 15 C -0.122 4.122 16 C -0.109 4.109 17 C -0.077 4.077 18 S -0.270 6.270 19 C -0.071 4.071 20 N -0.546 5.546 21 H 0.287 0.713 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.131 0.869 28 H 0.093 0.907 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 -14.030 2.018 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.195 4.195 3 Si 0.828 3.172 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.176 1.176 7 C -0.512 4.512 8 H 0.112 0.888 9 C 0.007 3.993 10 N -0.192 5.192 11 O -0.027 6.027 12 C -0.078 4.078 13 C 0.003 3.997 14 H 0.134 0.866 15 C -0.161 4.161 16 C -0.148 4.148 17 C -0.225 4.225 18 S -0.042 6.042 19 C -0.220 4.220 20 N -0.286 5.286 21 H 0.097 0.903 22 H 0.085 0.915 23 H 0.094 0.906 24 H 0.124 0.876 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.149 0.851 28 H 0.112 0.888 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.689 -13.991 1.182 14.058 hybrid contribution -0.247 1.684 0.718 1.848 sum -0.936 -12.307 1.900 12.488 Atomic orbital electron populations 1.69963 1.09126 1.30454 1.34514 1.26999 0.95901 1.04971 0.91605 0.84809 0.78582 0.74098 0.79724 1.18316 1.18816 1.17621 1.18873 0.94684 0.87389 1.50240 0.88842 1.22935 0.86634 0.92897 0.96814 1.75550 1.16391 0.92056 1.35159 1.85092 1.35240 1.13256 1.69102 1.28934 0.82312 0.98780 0.97751 1.19991 1.03382 0.79227 0.97069 0.86629 1.21621 1.01199 0.97835 0.95408 1.21692 1.01846 0.91267 0.99988 1.23655 1.02950 1.04630 0.91223 1.86898 1.85856 1.05016 1.26463 1.23362 1.04256 0.94562 0.99843 1.72167 1.30663 1.00613 1.25154 0.90279 0.91512 0.90586 0.87591 0.90010 0.88607 0.85132 0.88842 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.02 11.98 21.82 0.26 -46.76 15 2 C 0.02 1.23 5.49 85.28 0.47 1.70 15 3 Si 1.01 40.42 29.56 68.60 2.03 42.45 15 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 5 H -0.26 -9.92 7.11 99.48 0.71 -9.21 15 6 H -0.25 -9.67 7.11 99.48 0.71 -8.97 15 7 C -0.47 -27.98 9.52 23.55 0.22 -27.75 15 8 H 0.09 5.27 7.85 -2.91 -0.02 5.25 15 9 C 0.26 15.74 7.70 134.75 1.04 16.77 15 10 N -0.46 -28.00 10.49 -60.21 -0.63 -28.63 15 11 O 0.01 0.66 11.28 73.39 0.83 1.49 15 12 C 0.15 6.63 6.93 88.33 0.61 7.24 15 13 C 0.03 0.79 2.51 -11.65 -0.03 0.76 15 14 H 0.12 3.52 8.05 -2.38 -0.02 3.50 15 15 C -0.12 -3.01 4.90 30.33 0.15 -2.86 15 16 C -0.11 -1.78 5.76 30.50 0.18 -1.61 15 17 C -0.08 -1.18 6.45 72.01 0.46 -0.72 15 18 S -0.27 -6.11 22.33 -56.49 -1.26 -7.38 15 19 C -0.07 -1.98 5.71 72.01 0.41 -1.57 15 20 N -0.55 -29.48 11.62 -304.63 -3.54 -33.02 15 21 H 0.29 14.90 8.29 -92.71 -0.77 14.13 15 22 H 0.07 1.82 8.08 -2.39 -0.02 1.80 15 23 H 0.08 1.85 8.08 -2.39 -0.02 1.83 15 24 H 0.11 1.25 8.14 -2.38 -0.02 1.23 15 25 H 0.08 1.35 8.05 -2.39 -0.02 1.33 15 26 H 0.10 1.35 8.14 -2.38 -0.02 1.33 15 27 H 0.13 1.42 8.14 -2.39 -0.02 1.40 15 28 H 0.09 2.57 8.14 -2.39 -0.02 2.55 15 29 H 0.10 2.91 8.14 -2.39 -0.02 2.89 15 Total: -1.00 -72.30 262.66 2.35 -69.95 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 1.15 Total: 9.91 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 3.51 Total: -8.02 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -3.91 Total: -108.40 kcal Atomic # 8 Polarization: 0.66 SS G_CDS: 0.83 Total: 1.49 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Atomic # 16 Polarization: -6.11 SS G_CDS: -1.26 Total: -7.38 kcal Total: -72.30 2.35 -69.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260309064.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.629 kcal (2) G-P(sol) polarization free energy of solvation -72.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds