Wall clock time and date at job start Mon Mar 30 2020 03:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35285 * 117.00142 * 2 1 4 4 N 1.32338 * 120.63382 * 0.26591 * 3 2 1 5 5 C 1.32746 * 120.91440 * 180.26911 * 4 3 2 6 6 S 1.76202 * 118.87284 * 179.74455 * 5 4 3 7 7 C 1.81003 * 100.00144 * 359.97411 * 6 5 4 8 8 N 1.32896 * 122.24834 * 359.71595 * 5 4 3 9 9 C 1.31827 * 121.17146 * 0.02562 * 8 5 4 10 10 C 1.50696 * 120.53558 * 179.97438 * 9 8 5 11 11 C 1.41038 * 118.92604 * 359.97438 * 9 8 5 12 12 C 1.41016 * 120.99391 * 179.97438 * 11 9 8 13 13 H 1.07993 * 120.00451 * 322.50099 * 12 11 9 14 14 C 1.39859 * 119.99762 * 142.22490 * 12 11 9 15 15 N 1.30955 * 119.99565 * 340.29050 * 14 12 11 16 16 Si 1.86793 * 119.99832 * 160.28509 * 14 12 11 17 17 H 1.48497 * 109.47156 * 60.00638 * 16 14 12 18 18 H 1.48507 * 109.47027 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47408 * 299.99972 * 16 14 12 20 20 H 1.08991 * 109.47362 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46678 * 300.00032 * 1 2 3 22 22 H 1.09002 * 109.46794 * 59.99596 * 1 2 3 23 23 H 1.08996 * 109.47472 * 179.97438 * 7 6 5 24 24 H 1.09001 * 109.47110 * 300.00464 * 7 6 5 25 25 H 1.09001 * 109.47042 * 60.00036 * 7 6 5 26 26 H 1.09004 * 109.46997 * 270.01660 * 10 9 8 27 27 H 1.08998 * 109.47489 * 30.02120 * 10 9 8 28 28 H 1.08999 * 109.47235 * 150.02533 * 10 9 8 29 29 H 0.96999 * 119.99207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0433 1.2054 0.0000 4 7 1.3349 2.3232 0.0053 5 6 1.9317 3.5089 0.0000 6 16 0.9361 4.9626 0.0006 7 6 -0.7122 4.2147 0.0084 8 7 3.2545 3.6369 -0.0052 9 6 4.0423 2.5800 -0.0058 10 6 5.5406 2.7418 -0.0123 11 6 3.4603 1.2953 -0.0003 12 6 4.2617 0.1350 -0.0013 13 1 5.1765 0.1110 -0.5746 14 6 3.8747 -0.9828 0.7450 15 7 3.0164 -0.8503 1.7252 16 14 4.5818 -2.6644 0.3433 17 1 6.0590 -2.6283 0.4913 18 1 4.0153 -3.6745 1.2729 19 1 4.2329 -3.0274 -1.0537 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -1.4677 5.0004 0.0099 24 1 -0.8341 3.5947 -0.8798 25 1 -0.8274 3.5986 0.9001 26 1 5.8976 2.7786 -1.0416 27 1 5.8084 3.6667 0.4984 28 1 5.9995 1.8970 0.5013 29 1 2.7477 -1.6256 2.2425 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260314314.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:03 Heat of formation + Delta-G solvation = -6.600866 kcal Electronic energy + Delta-G solvation = -15361.022046 eV Core-core repulsion = 12796.601235 eV Total energy + Delta-G solvation = -2564.420811 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 3.69 seconds Orbital eigenvalues (eV) -39.41394 -36.96429 -34.19109 -32.52701 -30.62749 -28.57249 -27.66035 -26.49516 -25.27684 -22.34960 -20.98489 -17.77944 -17.34196 -16.52263 -15.35087 -15.21004 -14.80915 -13.78892 -13.51414 -13.45611 -13.35456 -12.89907 -12.54557 -11.99474 -11.87134 -11.56637 -11.42384 -11.23714 -11.14004 -10.98213 -10.71552 -10.47953 -10.05295 -9.45513 -9.17200 -8.73499 -8.04763 -7.90809 -7.04593 -6.78578 -4.47599 2.34212 2.35865 2.72427 3.00577 3.02012 3.03578 3.08005 3.84936 4.31602 4.53654 5.30344 5.50647 5.65007 5.70422 5.92801 5.99062 6.07655 6.21780 6.28333 6.31595 6.52876 6.58337 6.76646 6.98987 7.07165 7.42838 8.00589 8.11120 8.38406 8.57442 8.85109 9.46526 10.03066 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.009406 C = 0.007464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.315524 B = 2976.203674 C = 3750.356581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.268 6.268 3 C 0.303 3.697 4 N -0.562 5.562 5 C 0.189 3.811 6 S -0.070 6.070 7 C -0.124 4.124 8 N -0.487 5.487 9 C 0.055 3.945 10 C -0.067 4.067 11 C 0.025 3.975 12 C -0.433 4.433 13 H 0.090 0.910 14 C 0.082 3.918 15 N -0.758 5.758 16 Si 0.913 3.087 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.262 1.262 20 H 0.077 0.923 21 H 0.044 0.956 22 H 0.040 0.960 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.117 0.415 -1.687 3.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.171 6.171 3 C 0.108 3.892 4 N -0.295 5.295 5 C -0.181 4.181 6 S 0.160 5.840 7 C -0.294 4.294 8 N -0.206 5.206 9 C -0.093 4.093 10 C -0.125 4.125 11 C 0.017 3.983 12 C -0.463 4.463 13 H 0.108 0.892 14 C -0.140 4.140 15 N -0.381 5.381 16 Si 0.737 3.263 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.187 1.187 20 H 0.095 0.905 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.106 0.894 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.459 2.034 -1.480 4.277 hybrid contribution -0.035 -2.925 0.007 2.925 sum -3.495 -0.891 -1.473 3.896 Atomic orbital electron populations 1.22537 0.81261 1.00851 1.00585 1.86345 1.18948 1.24355 1.87502 1.20332 0.89450 0.82946 0.96520 1.67593 1.41631 0.98375 1.21944 1.22752 0.90419 0.92503 1.12473 1.84841 0.98309 1.06139 1.94733 1.23212 0.96172 1.03893 1.06109 1.67439 1.03625 1.34839 1.14654 1.21257 0.95369 0.86940 1.05717 1.20226 0.89666 1.01697 1.00903 1.18181 0.89493 0.94632 0.96038 1.19187 1.07277 0.95698 1.24174 0.89203 1.25820 0.93940 1.01059 0.93208 1.69751 1.23353 1.33140 1.11825 0.86276 0.79858 0.80438 0.79730 1.18909 1.20313 1.18684 0.90496 0.93757 0.94165 0.89356 0.90300 0.90252 0.92687 0.92576 0.90768 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 10.41 101.05 1.05 1.92 15 2 O -0.27 -6.56 7.46 -17.55 -0.13 -6.70 15 3 C 0.30 7.91 7.02 -15.90 -0.11 7.80 15 4 N -0.56 -14.02 8.02 -12.84 -0.10 -14.13 15 5 C 0.19 4.69 7.86 -90.38 -0.71 3.98 15 6 S -0.07 -1.40 22.89 -107.50 -2.46 -3.86 15 7 C -0.12 -2.02 9.60 101.05 0.97 -1.05 15 8 N -0.49 -12.46 10.30 -9.05 -0.09 -12.55 15 9 C 0.06 1.38 6.89 -81.54 -0.56 0.82 15 10 C -0.07 -1.38 9.72 36.00 0.35 -1.03 15 11 C 0.03 0.67 5.39 -106.35 -0.57 0.10 15 12 C -0.43 -10.84 7.75 -37.92 -0.29 -11.13 15 13 H 0.09 2.10 7.52 -52.49 -0.39 1.70 15 14 C 0.08 1.97 4.49 -17.32 -0.08 1.89 15 15 N -0.76 -19.00 11.19 55.54 0.62 -18.38 15 16 Si 0.91 17.94 29.60 -169.99 -5.03 12.91 15 17 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15 18 H -0.28 -5.36 7.11 56.52 0.40 -4.96 15 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 20 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 21 H 0.04 0.87 8.12 -51.93 -0.42 0.44 15 22 H 0.04 0.74 8.12 -51.93 -0.42 0.32 15 23 H 0.09 1.12 8.14 -51.92 -0.42 0.70 15 24 H 0.08 1.31 8.10 -51.92 -0.42 0.89 15 25 H 0.08 1.35 8.10 -51.92 -0.42 0.93 15 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 28 H 0.07 1.48 7.09 -51.93 -0.37 1.11 15 29 H 0.29 6.55 8.30 -40.82 -0.34 6.21 15 LS Contribution 267.84 15.07 4.04 4.04 Total: -1.00 -28.96 267.84 -6.39 -35.35 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -3.27 Total: 0.01 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 0.04 Total: 3.30 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.43 Total: -45.05 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.13 Total: -6.70 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.46 Total: -3.86 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.96 -6.39 -35.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260314314.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.753 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.69 seconds