Wall clock time and date at job start Mon Mar 30 2020 03:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35285 * 117.00142 * 2 1 4 4 N 1.32338 * 120.63382 * 0.26591 * 3 2 1 5 5 C 1.32746 * 120.91440 * 180.26911 * 4 3 2 6 6 S 1.76202 * 118.87284 * 179.74455 * 5 4 3 7 7 C 1.81003 * 100.00144 * 359.97411 * 6 5 4 8 8 N 1.32896 * 122.24834 * 359.71595 * 5 4 3 9 9 C 1.31827 * 121.17146 * 0.02562 * 8 5 4 10 10 C 1.50696 * 120.53558 * 179.97438 * 9 8 5 11 11 C 1.41038 * 118.92604 * 359.97438 * 9 8 5 12 12 C 1.41016 * 120.99391 * 179.97438 * 11 9 8 13 13 H 1.07993 * 120.00451 * 322.50099 * 12 11 9 14 14 C 1.39859 * 119.99762 * 142.22490 * 12 11 9 15 15 N 1.30955 * 119.99565 * 340.29050 * 14 12 11 16 16 Si 1.86793 * 119.99832 * 160.28509 * 14 12 11 17 17 H 1.48497 * 109.47156 * 60.00638 * 16 14 12 18 18 H 1.48507 * 109.47027 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47408 * 299.99972 * 16 14 12 20 20 H 1.08991 * 109.47362 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46678 * 300.00032 * 1 2 3 22 22 H 1.09002 * 109.46794 * 59.99596 * 1 2 3 23 23 H 1.08996 * 109.47472 * 179.97438 * 7 6 5 24 24 H 1.09001 * 109.47110 * 300.00464 * 7 6 5 25 25 H 1.09001 * 109.47042 * 60.00036 * 7 6 5 26 26 H 1.09004 * 109.46997 * 270.01660 * 10 9 8 27 27 H 1.08998 * 109.47489 * 30.02120 * 10 9 8 28 28 H 1.08999 * 109.47235 * 150.02533 * 10 9 8 29 29 H 0.96999 * 119.99207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0433 1.2054 0.0000 4 7 1.3349 2.3232 0.0053 5 6 1.9317 3.5089 0.0000 6 16 0.9361 4.9626 0.0006 7 6 -0.7122 4.2147 0.0084 8 7 3.2545 3.6369 -0.0052 9 6 4.0423 2.5800 -0.0058 10 6 5.5406 2.7418 -0.0123 11 6 3.4603 1.2953 -0.0003 12 6 4.2617 0.1350 -0.0013 13 1 5.1765 0.1110 -0.5746 14 6 3.8747 -0.9828 0.7450 15 7 3.0164 -0.8503 1.7252 16 14 4.5818 -2.6644 0.3433 17 1 6.0590 -2.6283 0.4913 18 1 4.0153 -3.6745 1.2729 19 1 4.2329 -3.0274 -1.0537 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -1.4677 5.0004 0.0099 24 1 -0.8341 3.5947 -0.8798 25 1 -0.8274 3.5986 0.9001 26 1 5.8976 2.7786 -1.0416 27 1 5.8084 3.6667 0.4984 28 1 5.9995 1.8970 0.5013 29 1 2.7477 -1.6256 2.2425 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260314314.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:01 Heat of formation + Delta-G solvation = -25.401163 kcal Electronic energy + Delta-G solvation = -15361.837288 eV Core-core repulsion = 12796.601235 eV Total energy + Delta-G solvation = -2565.236053 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25590 -38.76850 -36.00809 -34.34593 -32.48105 -30.01324 -29.31847 -28.17600 -27.04121 -24.20443 -22.80291 -19.60607 -19.13978 -18.31273 -17.08276 -16.94211 -16.56792 -15.42817 -15.22377 -15.10186 -15.03831 -14.35017 -14.05389 -13.69624 -13.51131 -13.19773 -13.08995 -12.86224 -12.79099 -12.63371 -12.26538 -12.16985 -11.64885 -11.19621 -10.98438 -10.57805 -9.93877 -9.69765 -8.80838 -8.51006 -6.33585 0.47237 0.73705 0.80974 1.42544 1.49079 1.51071 1.54751 2.21886 2.58213 2.73415 3.42801 3.77060 4.30670 4.36012 4.37971 4.43727 4.46069 4.53398 4.69629 4.84281 4.93894 4.96467 5.07981 5.19712 5.27074 5.64206 6.15636 6.26537 6.52484 6.73661 6.99625 7.56896 8.27437 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.009406 C = 0.007464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.315524 B = 2976.203674 C = 3750.356581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.285 6.285 3 C 0.280 3.720 4 N -0.562 5.562 5 C 0.165 3.835 6 S -0.059 6.059 7 C -0.114 4.114 8 N -0.506 5.506 9 C 0.039 3.961 10 C -0.061 4.061 11 C -0.009 4.009 12 C -0.452 4.452 13 H 0.099 0.901 14 C 0.046 3.954 15 N -0.791 5.791 16 Si 0.983 3.017 17 H -0.253 1.253 18 H -0.272 1.272 19 H -0.264 1.264 20 H 0.109 0.891 21 H 0.038 0.962 22 H 0.046 0.954 23 H 0.131 0.869 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.355 -0.103 -1.996 3.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.188 6.188 3 C 0.085 3.915 4 N -0.295 5.295 5 C -0.206 4.206 6 S 0.170 5.830 7 C -0.284 4.284 8 N -0.225 5.225 9 C -0.109 4.109 10 C -0.118 4.118 11 C -0.018 4.018 12 C -0.482 4.482 13 H 0.116 0.884 14 C -0.173 4.173 15 N -0.414 5.414 16 Si 0.804 3.196 17 H -0.177 1.177 18 H -0.196 1.196 19 H -0.188 1.188 20 H 0.127 0.873 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.149 0.851 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.703 1.522 -1.787 4.384 hybrid contribution -0.070 -2.678 0.112 2.681 sum -3.773 -1.156 -1.675 4.287 Atomic orbital electron populations 1.22767 0.79074 1.02981 1.00542 1.86292 1.21243 1.23894 1.87411 1.20625 0.90014 0.83680 0.97140 1.67669 1.41388 0.98335 1.22151 1.23738 0.91188 0.94123 1.11545 1.84701 0.99763 1.04288 1.94259 1.23299 0.94644 1.04951 1.05464 1.67577 1.04237 1.35056 1.15679 1.21980 0.97362 0.86786 1.04804 1.20257 0.87012 1.02280 1.02250 1.18619 0.90253 0.95700 0.97233 1.19461 1.07772 0.96215 1.24709 0.88362 1.26642 0.93954 1.04314 0.92414 1.69809 1.24537 1.34393 1.12692 0.85221 0.79619 0.75614 0.79193 1.17685 1.19611 1.18821 0.87297 0.94367 0.93523 0.85100 0.90642 0.91098 0.90812 0.91487 0.90537 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 10.41 113.37 1.18 2.80 15 2 O -0.28 -14.00 7.46 -85.71 -0.64 -14.64 15 3 C 0.28 14.83 7.02 85.55 0.60 15.43 15 4 N -0.56 -28.22 8.02 -307.58 -2.47 -30.69 15 5 C 0.16 8.17 7.86 180.26 1.42 9.59 15 6 S -0.06 -2.31 22.89 -56.49 -1.29 -3.60 15 7 C -0.11 -3.48 9.60 113.37 1.09 -2.40 15 8 N -0.51 -26.09 10.30 -182.55 -1.88 -27.97 15 9 C 0.04 1.95 6.89 43.25 0.30 2.25 15 10 C -0.06 -2.45 9.72 71.23 0.69 -1.75 15 11 C -0.01 -0.49 5.39 -20.98 -0.11 -0.60 15 12 C -0.45 -22.66 7.75 23.34 0.18 -22.48 15 13 H 0.10 4.57 7.52 -2.91 -0.02 4.55 15 14 C 0.05 2.20 4.49 85.22 0.38 2.58 15 15 N -0.79 -39.72 11.19 21.82 0.24 -39.47 15 16 Si 0.98 35.99 29.60 68.60 2.03 38.03 15 17 H -0.25 -8.73 7.11 99.48 0.71 -8.02 15 18 H -0.27 -9.55 7.11 99.48 0.71 -8.84 15 19 H -0.26 -9.64 7.11 99.48 0.71 -8.94 15 20 H 0.11 3.39 8.14 -2.39 -0.02 3.37 15 21 H 0.04 1.48 8.12 -2.39 -0.02 1.46 15 22 H 0.05 1.69 8.12 -2.39 -0.02 1.67 15 23 H 0.13 2.87 8.14 -2.40 -0.02 2.85 15 24 H 0.07 2.38 8.10 -2.39 -0.02 2.36 15 25 H 0.07 2.31 8.10 -2.39 -0.02 2.29 15 26 H 0.07 2.66 8.14 -2.38 -0.02 2.65 15 27 H 0.07 2.51 8.14 -2.39 -0.02 2.49 15 28 H 0.08 3.01 7.09 -2.39 -0.02 2.99 15 29 H 0.29 13.32 8.30 -92.71 -0.77 12.55 15 Total: -1.00 -62.39 267.84 2.88 -59.51 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 1.16 Total: 13.43 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 5.73 Total: 5.41 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -4.10 Total: -98.14 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.64 Total: -14.64 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.03 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -1.29 Total: -3.60 kcal Total: -62.39 2.88 -59.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260314314.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.106 kcal (2) G-P(sol) polarization free energy of solvation -62.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds