Wall clock time and date at job start Mon Mar 30 2020 04:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47308 * 2 1 4 4 C 1.46973 * 121.14280 * 89.99629 * 3 2 1 5 5 C 1.50286 * 109.50410 * 251.44767 * 4 3 2 6 6 O 1.21223 * 118.64708 * 116.70711 * 5 4 3 7 7 N 1.33394 * 122.70865 * 296.67938 * 5 4 3 8 8 C 1.37492 * 116.39236 * 191.48643 * 7 5 4 9 9 H 1.07999 * 120.00048 * 317.32769 * 8 7 5 10 10 C 1.38922 * 119.99955 * 137.33585 * 8 7 5 11 11 N 1.31356 * 119.99936 * 343.11287 * 10 8 7 12 12 Si 1.86800 * 120.00222 * 163.11331 * 10 8 7 13 13 H 1.48508 * 109.46999 * 59.99840 * 12 10 8 14 14 H 1.48499 * 109.47197 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46973 * 299.99731 * 12 10 8 16 16 C 1.33506 * 127.21262 * 11.51427 * 7 5 4 17 17 O 1.21213 * 118.86445 * 168.22376 * 16 7 5 18 18 C 1.50452 * 122.27188 * 348.19842 * 16 7 5 19 19 C 1.34791 * 121.14579 * 269.72178 * 3 2 1 20 20 O 1.21290 * 121.17788 * 359.76756 * 19 3 2 21 21 H 1.09000 * 109.47154 * 300.00040 * 1 2 3 22 22 H 1.09002 * 109.47101 * 59.99538 * 1 2 3 23 23 H 1.08993 * 109.47256 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47154 * 239.99960 * 2 1 3 25 25 H 1.09004 * 109.47088 * 119.99914 * 2 1 3 26 26 H 1.09007 * 109.46726 * 11.45706 * 4 3 2 27 27 H 1.09000 * 109.46803 * 131.44068 * 4 3 2 28 28 H 0.96997 * 120.00475 * 180.02562 * 11 10 8 29 29 H 1.08998 * 109.52428 * 182.17409 * 18 16 7 30 30 H 1.08995 * 109.52317 * 302.30800 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2717 2.0979 1.2579 5 6 1.2206 3.1540 1.4542 6 8 0.4779 3.0645 2.4080 7 7 1.0716 4.1861 0.6223 8 6 0.2439 5.1986 1.0467 9 1 -0.6949 4.9635 1.5260 10 6 0.6152 6.5240 0.8588 11 7 1.8656 6.8242 0.5913 12 14 -0.6639 7.8794 0.9867 13 1 -1.2669 7.8646 2.3438 14 1 -0.0172 9.1945 0.7472 15 1 -1.7244 7.6565 -0.0287 16 6 1.6367 4.3447 -0.5768 17 8 1.2357 5.2310 -1.3000 18 6 2.7544 3.4617 -1.0613 19 6 2.2561 2.0366 -1.1536 20 8 2.0772 1.5024 -2.2277 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2394 1.3942 2.0898 27 1 3.2547 2.5670 1.2171 28 1 2.1250 7.7497 0.4605 29 1 3.0834 3.7971 -2.0448 30 1 3.5883 3.5125 -0.3613 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260317773.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:47 Heat of formation + Delta-G solvation = -79.842239 kcal Electronic energy + Delta-G solvation = -18195.672674 eV Core-core repulsion = 15185.323008 eV Total energy + Delta-G solvation = -3010.349666 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.93272 -38.91644 -37.67579 -35.60776 -33.98933 -32.65448 -31.37096 -29.35126 -27.60674 -24.82667 -23.46260 -22.38187 -19.67309 -19.32923 -17.41522 -17.17519 -16.34918 -15.93543 -15.26684 -14.93802 -14.21106 -13.99257 -13.82180 -13.75937 -13.36298 -13.14796 -12.63112 -12.29729 -12.19776 -11.82077 -11.64967 -11.56862 -11.00836 -10.92268 -10.81732 -10.43680 -9.88366 -9.61556 -9.20630 -8.88502 -8.47652 -7.93175 -6.50901 -4.29599 2.30009 2.72500 3.21487 3.27791 3.28465 3.31693 3.83911 4.03852 4.40873 4.63380 4.78357 5.09523 5.10723 5.17377 5.33417 5.43862 5.49844 5.52578 5.73043 5.83702 6.01368 6.19245 6.34077 6.53488 7.26614 7.45965 7.83768 8.07432 8.20108 8.62927 8.87444 9.24345 9.52682 10.62349 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.033507 B = 0.009560 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.434558 B = 2928.249271 C = 3302.747713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.117 3.883 3 N -0.611 5.611 4 C 0.088 3.912 5 C 0.480 3.520 6 O -0.518 6.518 7 N -0.405 5.405 8 C -0.372 4.372 9 H 0.099 0.901 10 C 0.078 3.922 11 N -0.852 5.852 12 Si 0.930 3.070 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.269 1.269 16 C 0.519 3.481 17 O -0.471 6.471 18 C -0.166 4.166 19 C 0.526 3.474 20 O -0.529 6.529 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.100 0.900 28 H 0.274 0.726 29 H 0.126 0.874 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.894 -9.502 0.910 10.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.005 4.005 3 N -0.347 5.347 4 C -0.038 4.038 5 C 0.268 3.732 6 O -0.394 6.394 7 N -0.135 5.135 8 C -0.497 4.497 9 H 0.117 0.883 10 C -0.133 4.133 11 N -0.486 5.486 12 Si 0.756 3.244 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.194 1.194 16 C 0.307 3.693 17 O -0.342 6.342 18 C -0.209 4.209 19 C 0.314 3.686 20 O -0.405 6.405 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.135 0.865 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.144 0.856 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.357 -9.250 0.366 9.847 hybrid contribution -0.285 0.787 0.170 0.854 sum 3.072 -8.463 0.535 9.019 Atomic orbital electron populations 1.22177 0.95726 1.02043 1.03176 1.21476 0.94742 0.81175 1.03085 1.48148 1.66420 1.14435 1.05739 1.22156 0.99043 0.94859 0.87727 1.20648 0.85747 0.83886 0.82912 1.90583 1.42845 1.76099 1.29903 1.41719 1.40035 1.18244 1.13539 1.19329 1.02830 0.83992 1.43549 0.88331 1.25260 0.96029 0.98744 0.93226 1.69742 1.16025 1.20560 1.42224 0.85962 0.80633 0.78939 0.78858 1.19724 1.20808 1.19448 1.19299 0.83491 0.84997 0.81513 1.90567 1.59159 1.31443 1.53053 1.22317 0.99779 0.91988 1.06800 1.20556 0.76838 0.87689 0.83489 1.90687 1.52064 1.69706 1.28061 0.91853 0.92247 0.91594 0.89711 0.90165 0.86536 0.88170 0.91576 0.85564 0.86588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 37.16 0.38 -1.97 16 2 C 0.12 1.48 6.27 -4.04 -0.03 1.45 16 3 N -0.61 -9.44 2.58 -174.67 -0.45 -9.89 16 4 C 0.09 1.34 5.82 -5.14 -0.03 1.31 16 5 C 0.48 10.45 7.19 -11.80 -0.08 10.36 16 6 O -0.52 -12.67 16.44 5.61 0.09 -12.58 16 7 N -0.40 -10.13 2.61 -61.52 -0.16 -10.29 16 8 C -0.37 -10.41 8.16 -14.76 -0.12 -10.53 16 9 H 0.10 2.82 7.51 -52.49 -0.39 2.43 16 10 C 0.08 2.13 4.22 -17.50 -0.07 2.05 16 11 N -0.85 -23.65 11.70 55.49 0.65 -23.00 16 12 Si 0.93 21.68 29.58 -169.99 -5.03 16.65 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 C 0.52 12.56 5.94 -11.67 -0.07 12.49 16 17 O -0.47 -13.16 14.68 5.62 0.08 -13.07 16 18 C -0.17 -3.03 5.50 -28.89 -0.16 -3.19 16 19 C 0.53 9.48 7.08 -10.71 -0.08 9.40 16 20 O -0.53 -10.76 16.93 5.55 0.09 -10.66 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.08 1.06 7.55 -51.93 -0.39 0.67 16 25 H 0.08 0.77 7.93 -51.93 -0.41 0.35 16 26 H 0.12 1.43 7.80 -51.93 -0.41 1.03 16 27 H 0.10 1.29 6.59 -51.93 -0.34 0.95 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.13 2.21 8.10 -51.93 -0.42 1.79 16 30 H 0.12 1.75 6.64 -51.93 -0.34 1.40 16 LS Contribution 261.10 15.07 3.93 3.93 Total: -1.00 -34.17 261.10 -4.16 -38.33 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -3.11 Total: -0.82 kcal Atomic # 6 Polarization: 21.65 SS G_CDS: -0.26 Total: 21.39 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.04 Total: -43.18 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: 0.27 Total: -36.31 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.17 -4.16 -38.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317773.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.510 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds