Wall clock time and date at job start Mon Mar 30 2020 03:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47259 * 179.72713 * 9 7 2 11 11 N 1.29947 * 126.28385 * 269.68780 * 10 9 7 12 12 O 1.21312 * 110.24523 * 179.84689 * 11 10 9 13 13 C 1.33632 * 109.81112 * 0.42360 * 12 11 10 14 14 C 1.50708 * 126.54979 * 179.76320 * 13 12 11 15 15 H 1.08995 * 108.85012 * 182.84705 * 14 13 12 16 16 C 1.52942 * 108.88643 * 64.41037 * 14 13 12 17 17 C 1.55152 * 108.95749 * 209.10819 * 16 14 13 18 18 S 1.83990 * 100.91238 * 41.43624 * 17 16 14 19 19 C 1.53699 * 108.88542 * 301.42706 * 14 13 12 20 20 N 1.31134 * 106.90355 * 359.73705 * 13 12 11 21 21 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 23 23 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 24 24 H 1.08997 * 109.60286 * 329.03294 * 16 14 13 25 25 H 1.08997 * 109.60565 * 89.17691 * 16 14 13 26 26 H 1.08999 * 111.13101 * 283.52351 * 17 16 14 27 27 H 1.09000 * 111.13378 * 159.35130 * 17 16 14 28 28 H 1.08996 * 110.34235 * 242.49141 * 19 14 13 29 29 H 1.09007 * 110.34404 * 4.74743 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0079 11 7 2.7208 -4.2301 -1.0592 12 8 3.4837 -5.1140 -0.7298 13 6 3.5470 -5.1841 0.6032 14 6 4.3743 -6.1492 1.4128 15 1 4.1703 -5.9863 2.4711 16 6 5.8555 -5.8739 1.1491 17 6 6.6523 -7.1937 1.3233 18 16 5.5233 -8.3930 0.5033 19 6 3.9681 -7.5846 1.0429 20 7 2.7523 -4.2524 1.0723 21 1 -0.4851 0.8401 0.0004 22 1 0.6283 -2.5592 0.8921 23 1 0.6202 -2.5546 -0.8878 24 1 5.9828 -5.5013 0.1327 25 1 6.2209 -5.1299 1.8569 26 1 6.7848 -7.4365 2.3777 27 1 7.6125 -7.1438 0.8100 28 1 3.5562 -8.0977 1.9119 29 1 3.2435 -7.5755 0.2286 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260338240.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:33 Heat of formation + Delta-G solvation = 32.944538 kcal Electronic energy + Delta-G solvation = -14655.772063 eV Core-core repulsion = 12093.066070 eV Total energy + Delta-G solvation = -2562.705994 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.61407 -38.06027 -37.17112 -35.22144 -33.32835 -30.93330 -30.38987 -26.70632 -26.21957 -24.46168 -23.27524 -21.04377 -19.33422 -18.53139 -18.39388 -17.64309 -17.30641 -16.70115 -15.62263 -15.04511 -14.74453 -14.57510 -14.14606 -13.80351 -13.41893 -13.33675 -12.99654 -12.95669 -12.92691 -12.69128 -12.45261 -12.17324 -12.08973 -11.87414 -11.67912 -10.97615 -10.75919 -10.72586 -8.71084 -8.34564 -6.48387 0.19210 0.79814 1.21789 1.35410 1.37471 1.40124 1.51437 1.86822 2.33920 2.65219 2.98562 3.23335 3.36591 3.69787 3.81138 3.89826 4.18827 4.34125 4.50132 4.61780 4.67614 4.79895 4.88224 4.99470 5.04051 5.11237 5.24502 5.54696 5.90065 6.57045 7.20101 7.30279 8.77369 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.051384 B = 0.005061 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.788174 B = 5531.116528 C = 5801.627614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.538 4.538 8 H 0.048 0.952 9 C 0.108 3.892 10 C 0.191 3.809 11 N -0.414 5.414 12 O 0.078 5.922 13 C 0.174 3.826 14 C 0.012 3.988 15 H 0.145 0.855 16 C -0.124 4.124 17 C -0.044 4.044 18 S -0.327 6.327 19 C -0.058 4.058 20 N -0.494 5.494 21 H 0.272 0.728 22 H 0.034 0.966 23 H 0.025 0.975 24 H 0.072 0.928 25 H 0.113 0.887 26 H 0.122 0.878 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.130 -14.403 5.455 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.577 4.577 8 H 0.067 0.933 9 C 0.070 3.930 10 C -0.081 4.081 11 N -0.123 5.123 12 O 0.020 5.980 13 C -0.047 4.047 14 C -0.010 4.010 15 H 0.163 0.837 16 C -0.164 4.164 17 C -0.192 4.192 18 S -0.102 6.102 19 C -0.207 4.207 20 N -0.227 5.227 21 H 0.081 0.919 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.091 0.909 25 H 0.132 0.868 26 H 0.141 0.859 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.744 -14.823 4.271 20.009 hybrid contribution -0.372 1.815 0.372 1.889 sum 12.372 -13.008 4.643 18.543 Atomic orbital electron populations 1.70048 1.07559 1.28601 1.49821 1.25893 0.95923 1.03144 0.93734 0.85247 0.78510 0.77945 0.78436 1.19312 1.19704 1.19344 1.21078 0.92749 0.90687 1.53199 0.93321 1.17475 0.90711 0.86947 0.97900 1.26445 0.99832 0.98846 0.82967 1.74628 1.09209 1.04130 1.24297 1.85209 1.47078 1.40493 1.25238 1.29344 0.96423 0.96490 0.82465 1.20654 0.92799 0.88240 0.99309 0.83704 1.22525 0.89697 0.99432 1.04779 1.24446 0.99382 0.90646 1.04689 1.88156 1.05252 1.43585 1.73158 1.24031 0.97248 0.93503 1.05922 1.71886 1.12232 1.08638 1.29994 0.91916 0.94796 0.95691 0.90903 0.86846 0.85934 0.85434 0.85143 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.89 13.29 21.45 0.28 -54.61 15 2 C 0.01 0.73 5.46 84.65 0.46 1.20 15 3 Si 0.98 44.24 29.54 68.60 2.03 46.27 15 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 15 7 C -0.54 -31.70 9.09 25.60 0.23 -31.46 15 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 15 9 C 0.11 6.08 5.60 29.10 0.16 6.24 15 10 C 0.19 9.38 7.41 138.46 1.03 10.40 15 11 N -0.41 -19.10 12.16 -60.31 -0.73 -19.83 15 12 O 0.08 2.92 11.22 74.92 0.84 3.76 15 13 C 0.17 5.67 6.50 88.38 0.57 6.24 15 14 C 0.01 0.23 3.13 -11.32 -0.04 0.19 15 15 H 0.15 2.30 8.14 -2.39 -0.02 2.28 15 16 C -0.12 -1.94 5.79 31.31 0.18 -1.76 15 17 C -0.04 -0.50 7.52 72.72 0.55 0.05 15 18 S -0.33 -6.04 23.23 -56.49 -1.31 -7.35 15 19 C -0.06 -1.03 6.98 72.22 0.50 -0.53 15 20 N -0.49 -20.81 11.55 -303.19 -3.50 -24.31 15 21 H 0.27 14.96 8.31 -92.71 -0.77 14.19 15 22 H 0.03 1.97 8.14 -2.39 -0.02 1.95 15 23 H 0.02 1.47 8.14 -2.39 -0.02 1.46 15 24 H 0.07 1.42 7.79 -2.39 -0.02 1.40 15 25 H 0.11 1.42 8.14 -2.39 -0.02 1.40 15 26 H 0.12 0.83 8.14 -2.39 -0.02 0.81 15 27 H 0.13 1.12 8.14 -2.39 -0.02 1.10 15 28 H 0.13 1.68 8.14 -2.39 -0.02 1.66 15 29 H 0.09 1.93 7.60 -2.38 -0.02 1.92 15 Total: -1.00 -70.17 268.22 2.41 -67.76 By element: Atomic # 1 Polarization: -3.41 SS G_CDS: 1.15 Total: -2.26 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 3.65 Total: -9.43 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -3.95 Total: -98.75 kcal Atomic # 8 Polarization: 2.92 SS G_CDS: 0.84 Total: 3.76 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -6.04 SS G_CDS: -1.31 Total: -7.35 kcal Total: -70.17 2.41 -67.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260338240.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.701 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds