Wall clock time and date at job start Mon Mar 30 2020 03:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 119.99934 * 2 1 4 4 H 1.48506 * 109.47250 * 269.99673 * 3 2 1 5 5 H 1.48504 * 109.47397 * 29.99675 * 3 2 1 6 6 H 1.48501 * 109.47147 * 149.99979 * 3 2 1 7 7 C 1.37883 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99686 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99729 * 180.02562 * 7 2 1 10 10 C 1.50708 * 109.46920 * 179.97438 * 9 7 2 11 11 N 1.29939 * 126.28744 * 270.02763 * 10 9 7 12 12 O 1.21301 * 110.24820 * 179.68540 * 11 10 9 13 13 C 1.33635 * 109.81228 * 0.46466 * 12 11 10 14 14 C 1.50706 * 126.55435 * 179.80380 * 13 12 11 15 15 H 1.08995 * 109.60553 * 178.98668 * 14 13 12 16 16 C 1.53857 * 109.60702 * 299.32622 * 14 13 12 17 17 C 1.55044 * 106.94665 * 167.33151 * 16 14 13 18 18 S 1.83453 * 102.08561 * 317.64098 * 17 16 14 19 19 C 1.54269 * 109.60871 * 58.64660 * 14 13 12 20 20 N 1.31133 * 106.89680 * 359.54056 * 13 12 11 21 21 H 0.97001 * 120.00041 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47063 * 59.99904 * 9 7 2 23 23 H 1.08999 * 109.47332 * 299.99919 * 9 7 2 24 24 H 1.09006 * 109.97511 * 286.53459 * 16 14 13 25 25 H 1.08998 * 109.97579 * 47.81349 * 16 14 13 26 26 H 1.09003 * 110.81229 * 199.54578 * 17 16 14 27 27 H 1.08999 * 111.18479 * 75.90405 * 17 16 14 28 28 H 1.08998 * 110.40158 * 330.92312 * 19 14 13 29 29 H 1.08999 * 110.40006 * 93.21969 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0139 -2.6149 0.0023 11 7 4.2693 -3.3395 1.0502 12 8 4.6523 -4.4408 0.7160 13 6 4.6879 -4.5226 -0.6174 14 6 5.1104 -5.7178 -1.4324 15 1 5.0165 -5.4885 -2.4938 16 6 6.5719 -6.0733 -1.1082 17 6 6.8413 -7.4746 -1.7145 18 16 5.3072 -8.3823 -1.2806 19 6 4.2163 -6.9253 -1.0824 20 7 4.2796 -3.3660 -1.0812 21 1 -0.4850 0.8400 -0.0004 22 1 3.8745 -0.6800 0.8911 23 1 3.8752 -0.6804 -0.8888 24 1 7.2419 -5.3407 -1.5584 25 1 6.7183 -6.0982 -0.0284 26 1 7.7112 -7.9375 -1.2484 27 1 6.9664 -7.4185 -2.7958 28 1 3.8639 -6.8516 -0.0536 29 1 3.3719 -6.9845 -1.7692 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260338242.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:37 Heat of formation + Delta-G solvation = 57.433601 kcal Electronic energy + Delta-G solvation = -14635.319027 eV Core-core repulsion = 12073.674959 eV Total energy + Delta-G solvation = -2561.644068 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.06372 -37.13772 -35.59238 -33.16417 -31.91670 -29.92613 -29.12097 -25.63548 -24.11888 -23.00436 -21.94525 -19.82858 -17.77491 -17.20283 -16.78676 -16.65300 -16.19999 -14.81166 -14.43203 -14.26853 -13.39770 -13.12875 -12.66900 -12.36244 -12.32949 -12.29030 -12.08915 -11.79346 -11.45486 -11.25517 -10.79347 -10.61095 -10.44235 -10.35275 -10.12205 -9.63246 -9.08460 -8.69976 -7.94336 -6.18830 -4.20653 1.47778 1.53667 2.07685 2.91671 3.09839 3.22687 3.29990 3.31226 3.88695 4.20463 4.30920 4.42027 4.61973 4.68250 4.79860 4.91057 5.15254 5.22773 5.31552 5.35033 5.55224 5.59554 5.70813 6.27888 6.55605 6.76315 6.92637 7.45032 8.31604 8.78602 8.80933 9.37404 10.93871 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.057410 B = 0.004971 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.600877 B = 5631.611095 C = 5814.898899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.879 3.121 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.072 0.928 9 C 0.067 3.933 10 C 0.221 3.779 11 N -0.391 5.391 12 O 0.068 5.932 13 C 0.152 3.848 14 C 0.008 3.992 15 H 0.125 0.875 16 C -0.126 4.126 17 C -0.070 4.070 18 S -0.281 6.281 19 C -0.071 4.071 20 N -0.466 5.466 21 H 0.268 0.732 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.071 -13.004 -3.852 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.091 0.909 9 C 0.028 3.972 10 C -0.051 4.051 11 N -0.100 5.100 12 O 0.012 5.988 13 C -0.071 4.071 14 C -0.014 4.014 15 H 0.143 0.857 16 C -0.165 4.165 17 C -0.218 4.218 18 S -0.055 6.055 19 C -0.220 4.220 20 N -0.200 5.200 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.114 0.886 25 H 0.110 0.890 26 H 0.127 0.873 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.475 -13.470 -3.213 19.321 hybrid contribution 0.396 1.951 -0.185 1.999 sum 13.870 -11.519 -3.398 18.347 Atomic orbital electron populations 1.69878 1.06234 1.27319 1.49570 1.24899 0.94834 0.99004 0.94037 0.86782 0.80371 0.83383 0.78906 1.19739 1.20822 1.18858 1.20674 0.87294 0.95095 1.52788 0.90937 1.18266 0.97939 0.81968 0.98998 1.26373 0.95771 1.01149 0.81777 1.74646 1.19205 0.92358 1.23772 1.85238 1.61595 1.28014 1.23982 1.28130 0.99189 0.96564 0.83190 1.20496 0.94484 0.87031 0.99352 0.85671 1.22666 0.94132 0.96209 1.03512 1.24227 0.97398 0.95862 1.04314 1.87683 1.09743 1.15709 1.92392 1.24129 0.99449 0.91331 1.07046 1.71921 1.16230 1.01532 1.30300 0.92253 0.93497 0.93461 0.88608 0.89022 0.87303 0.88465 0.87779 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.96 55.43 0.77 -26.47 15 2 C 0.08 2.17 5.47 -17.82 -0.10 2.08 15 3 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 15 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.26 -6.03 6.54 56.52 0.37 -5.66 15 7 C -0.52 -15.07 9.65 -34.44 -0.33 -15.40 15 8 H 0.07 2.32 7.98 -52.49 -0.42 1.91 15 9 C 0.07 1.67 4.67 -29.03 -0.14 1.53 15 10 C 0.22 5.08 7.41 -156.38 -1.16 3.92 15 11 N -0.39 -8.51 12.16 30.89 0.38 -8.14 15 12 O 0.07 1.22 11.20 18.12 0.20 1.43 15 13 C 0.15 2.46 6.91 -13.05 -0.09 2.37 15 14 C 0.01 0.09 3.08 -90.66 -0.28 -0.19 15 15 H 0.13 1.24 8.14 -51.93 -0.42 0.82 15 16 C -0.13 -1.04 5.75 -25.20 -0.14 -1.18 15 17 C -0.07 -0.49 7.38 38.24 0.28 -0.21 15 18 S -0.28 -2.82 23.25 -107.50 -2.50 -5.32 15 19 C -0.07 -0.74 6.80 37.82 0.26 -0.49 15 20 N -0.47 -9.49 11.55 -9.87 -0.11 -9.61 15 21 H 0.27 7.56 8.31 -40.82 -0.34 7.22 15 22 H 0.05 1.14 7.20 -51.93 -0.37 0.77 15 23 H 0.05 1.12 7.57 -51.93 -0.39 0.73 15 24 H 0.10 0.69 8.14 -51.93 -0.42 0.27 15 25 H 0.09 0.80 8.11 -51.93 -0.42 0.38 15 26 H 0.11 0.61 8.14 -51.93 -0.42 0.19 15 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 15 28 H 0.10 1.18 7.80 -51.93 -0.40 0.78 15 29 H 0.11 1.09 8.14 -51.93 -0.42 0.67 15 LS Contribution 265.14 15.07 4.00 4.00 Total: -1.00 -32.39 265.14 -6.93 -39.32 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: -3.29 Total: -4.01 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -1.70 Total: -7.58 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 1.04 Total: -44.21 kcal Atomic # 8 Polarization: 1.22 SS G_CDS: 0.20 Total: 1.43 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -2.50 Total: -5.32 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.39 -6.93 -39.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260338242.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.750 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds