Wall clock time and date at job start Mon Mar 30 2020 03:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 119.99934 * 2 1 4 4 H 1.48506 * 109.47250 * 269.99673 * 3 2 1 5 5 H 1.48504 * 109.47397 * 29.99675 * 3 2 1 6 6 H 1.48501 * 109.47147 * 149.99979 * 3 2 1 7 7 C 1.37883 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99686 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99729 * 180.02562 * 7 2 1 10 10 C 1.50708 * 109.46920 * 179.97438 * 9 7 2 11 11 N 1.29939 * 126.28744 * 270.02763 * 10 9 7 12 12 O 1.21301 * 110.24820 * 179.68540 * 11 10 9 13 13 C 1.33635 * 109.81228 * 0.46466 * 12 11 10 14 14 C 1.50706 * 126.55435 * 179.80380 * 13 12 11 15 15 H 1.08995 * 109.60553 * 178.98668 * 14 13 12 16 16 C 1.53857 * 109.60702 * 299.32622 * 14 13 12 17 17 C 1.55044 * 106.94665 * 167.33151 * 16 14 13 18 18 S 1.83453 * 102.08561 * 317.64098 * 17 16 14 19 19 C 1.54269 * 109.60871 * 58.64660 * 14 13 12 20 20 N 1.31133 * 106.89680 * 359.54056 * 13 12 11 21 21 H 0.97001 * 120.00041 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47063 * 59.99904 * 9 7 2 23 23 H 1.08999 * 109.47332 * 299.99919 * 9 7 2 24 24 H 1.09006 * 109.97511 * 286.53459 * 16 14 13 25 25 H 1.08998 * 109.97579 * 47.81349 * 16 14 13 26 26 H 1.09003 * 110.81229 * 199.54578 * 17 16 14 27 27 H 1.08999 * 111.18479 * 75.90405 * 17 16 14 28 28 H 1.08998 * 110.40158 * 330.92312 * 19 14 13 29 29 H 1.08999 * 110.40006 * 93.21969 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0139 -2.6149 0.0023 11 7 4.2693 -3.3395 1.0502 12 8 4.6523 -4.4408 0.7160 13 6 4.6879 -4.5226 -0.6174 14 6 5.1104 -5.7178 -1.4324 15 1 5.0165 -5.4885 -2.4938 16 6 6.5719 -6.0733 -1.1082 17 6 6.8413 -7.4746 -1.7145 18 16 5.3072 -8.3823 -1.2806 19 6 4.2163 -6.9253 -1.0824 20 7 4.2796 -3.3660 -1.0812 21 1 -0.4850 0.8400 -0.0004 22 1 3.8745 -0.6800 0.8911 23 1 3.8752 -0.6804 -0.8888 24 1 7.2419 -5.3407 -1.5584 25 1 6.7183 -6.0982 -0.0284 26 1 7.7112 -7.9375 -1.2484 27 1 6.9664 -7.4185 -2.7958 28 1 3.8639 -6.8516 -0.0536 29 1 3.3719 -6.9845 -1.7692 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260338242.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:36 Heat of formation + Delta-G solvation = 34.642569 kcal Electronic energy + Delta-G solvation = -14636.307320 eV Core-core repulsion = 12073.674959 eV Total energy + Delta-G solvation = -2562.632362 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.65557 -38.05900 -37.23271 -35.17259 -33.48387 -31.37512 -30.49236 -26.58914 -26.05921 -24.36383 -23.27448 -21.14192 -19.50814 -18.79521 -18.53147 -17.58452 -17.29764 -16.52414 -15.74469 -15.23922 -14.97592 -14.34580 -14.27030 -13.86007 -13.40656 -13.34851 -13.30546 -13.04049 -12.99287 -12.59744 -12.38640 -12.14237 -11.96701 -11.90911 -11.78498 -11.07139 -10.88781 -10.75021 -8.71599 -8.40571 -6.50466 0.13800 0.71030 1.18309 1.34935 1.37503 1.39837 1.48703 1.84652 2.28789 2.62458 2.92712 3.16449 3.35750 3.61748 3.75847 3.89813 4.18025 4.21563 4.52432 4.57109 4.57629 4.76588 4.79424 4.84823 4.94273 5.02186 5.12290 5.33166 6.04949 6.50526 7.12424 7.24290 8.76165 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.057410 B = 0.004971 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.600877 B = 5631.611095 C = 5814.898899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.243 1.243 7 C -0.535 4.535 8 H 0.020 0.980 9 C 0.073 3.927 10 C 0.193 3.807 11 N -0.410 5.410 12 O 0.080 5.920 13 C 0.180 3.820 14 C 0.010 3.990 15 H 0.142 0.858 16 C -0.121 4.121 17 C -0.053 4.053 18 S -0.311 6.311 19 C -0.069 4.069 20 N -0.493 5.493 21 H 0.273 0.727 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.114 0.886 25 H 0.087 0.913 26 H 0.129 0.871 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.717 -12.962 -4.654 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.183 4.183 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.166 1.166 7 C -0.573 4.573 8 H 0.038 0.962 9 C 0.034 3.966 10 C -0.079 4.079 11 N -0.118 5.118 12 O 0.021 5.979 13 C -0.042 4.042 14 C -0.012 4.012 15 H 0.159 0.841 16 C -0.160 4.160 17 C -0.200 4.200 18 S -0.085 6.085 19 C -0.218 4.218 20 N -0.226 5.226 21 H 0.082 0.918 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.133 0.867 25 H 0.106 0.894 26 H 0.148 0.852 27 H 0.136 0.864 28 H 0.109 0.891 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.131 -13.442 -4.025 21.380 hybrid contribution -0.445 1.724 0.045 1.781 sum 15.686 -11.718 -3.980 19.980 Atomic orbital electron populations 1.70031 1.08410 1.28897 1.50670 1.25967 0.95771 1.03565 0.93009 0.85574 0.79478 0.77249 0.79930 1.18134 1.20176 1.16633 1.20814 0.89731 0.93399 1.53383 0.96172 1.18047 0.94947 0.83889 0.99676 1.26138 0.97572 1.01154 0.82999 1.74603 1.19637 0.93306 1.24207 1.85191 1.61095 1.26567 1.25033 1.29086 0.95983 0.96715 0.82417 1.20919 0.96339 0.84791 0.99126 0.84061 1.22677 0.92127 0.97541 1.03697 1.24350 0.95939 0.94003 1.05698 1.87847 1.11834 1.16125 1.92663 1.24046 0.99808 0.91530 1.06389 1.71867 1.17944 1.02906 1.29924 0.91771 0.92871 0.92160 0.86734 0.89385 0.85233 0.86422 0.89056 0.86963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.01 13.96 21.45 0.30 -58.71 15 2 C 0.02 0.91 5.47 84.66 0.46 1.37 15 3 Si 0.96 42.99 27.47 68.60 1.88 44.87 15 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 15 5 H -0.28 -12.08 7.11 99.48 0.71 -11.38 15 6 H -0.24 -10.04 6.54 99.48 0.65 -9.38 15 7 C -0.53 -32.00 9.65 25.60 0.25 -31.75 15 8 H 0.02 1.36 7.98 -2.91 -0.02 1.34 15 9 C 0.07 3.64 4.67 29.10 0.14 3.77 15 10 C 0.19 8.94 7.41 138.47 1.03 9.96 15 11 N -0.41 -17.91 12.16 -60.36 -0.73 -18.64 15 12 O 0.08 2.83 11.20 74.90 0.84 3.67 15 13 C 0.18 5.64 6.91 88.38 0.61 6.25 15 14 C 0.01 0.19 3.08 -10.82 -0.03 0.16 15 15 H 0.14 2.40 8.14 -2.39 -0.02 2.38 15 16 C -0.12 -1.60 5.75 31.58 0.18 -1.42 15 17 C -0.05 -0.54 7.38 72.68 0.54 0.00 15 18 S -0.31 -5.60 23.25 -56.49 -1.31 -6.92 15 19 C -0.07 -1.36 6.80 72.41 0.49 -0.87 15 20 N -0.49 -19.94 11.55 -303.23 -3.50 -23.44 15 21 H 0.27 15.73 8.31 -92.71 -0.77 14.96 15 22 H 0.05 2.54 7.20 -2.39 -0.02 2.53 15 23 H 0.06 2.80 7.57 -2.39 -0.02 2.79 15 24 H 0.11 1.18 8.14 -2.38 -0.02 1.16 15 25 H 0.09 1.28 8.11 -2.39 -0.02 1.26 15 26 H 0.13 0.90 8.14 -2.39 -0.02 0.88 15 27 H 0.12 0.82 8.14 -2.39 -0.02 0.80 15 28 H 0.09 2.04 7.80 -2.39 -0.02 2.02 15 29 H 0.11 2.14 8.14 -2.39 -0.02 2.12 15 Total: -1.00 -72.64 265.14 2.23 -70.40 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: 1.10 Total: 1.29 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 3.66 Total: -12.53 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -3.94 Total: -100.79 kcal Atomic # 8 Polarization: 2.83 SS G_CDS: 0.84 Total: 3.67 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.87 kcal Atomic # 16 Polarization: -5.60 SS G_CDS: -1.31 Total: -6.92 kcal Total: -72.64 2.23 -70.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260338242.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.046 kcal (2) G-P(sol) polarization free energy of solvation -72.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds