Wall clock time and date at job start Mon Mar 30 2020 03:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86798 * 120.00151 * 2 1 4 4 H 1.48506 * 109.47061 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47011 * 120.00298 * 3 2 1 6 6 H 1.48497 * 109.47689 * 240.00581 * 3 2 1 7 7 C 1.40255 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99407 * 4.17516 * 7 2 1 9 9 C 1.40059 * 119.99975 * 184.16829 * 7 2 1 10 10 N 1.32117 * 126.21607 * 5.75649 * 9 7 2 11 11 N 1.26276 * 115.91412 * 179.76783 * 10 9 7 12 12 C 1.30074 * 117.84844 * 0.54160 * 11 10 9 13 13 C 1.50705 * 125.42716 * 179.68259 * 12 11 10 14 14 C 1.53176 * 109.54477 * 59.58367 * 13 12 11 15 15 C 1.53086 * 109.16510 * 183.14870 * 14 13 12 16 16 O 1.42910 * 109.41292 * 57.60856 * 15 14 13 17 17 C 1.42897 * 114.09640 * 298.84140 * 16 15 14 18 18 C 1.53097 * 109.41688 * 61.15791 * 17 16 15 19 19 S 1.71237 * 109.13780 * 359.70463 * 12 11 10 20 20 H 0.97000 * 120.00564 * 174.84019 * 1 2 3 21 21 H 1.09005 * 109.54220 * 179.84631 * 13 12 11 22 22 H 1.09001 * 109.52185 * 303.05839 * 14 13 12 23 23 H 1.09001 * 109.52128 * 63.24318 * 14 13 12 24 24 H 1.09000 * 109.48602 * 297.62616 * 15 14 13 25 25 H 1.09005 * 109.48550 * 177.58907 * 15 14 13 26 26 H 1.09001 * 109.48243 * 301.17311 * 17 16 15 27 27 H 1.09003 * 109.48343 * 181.14117 * 17 16 15 28 28 H 1.09001 * 109.52273 * 182.48438 * 18 17 16 29 29 H 1.09006 * 109.51865 * 62.29358 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 1.2759 2.7465 0.0006 5 1 3.0947 1.6963 1.2125 6 1 3.0946 1.6965 -1.2125 7 6 2.0082 -1.2146 -0.0005 8 1 1.4702 -2.1486 -0.0691 9 6 3.4060 -1.2162 0.0876 10 7 4.1770 -0.1612 0.2824 11 7 5.4184 -0.3870 0.3343 12 6 5.8195 -1.6151 0.1830 13 6 7.2545 -2.0746 0.2072 14 6 7.8836 -1.7195 1.5579 15 6 9.3614 -2.1188 1.5445 16 8 10.0230 -1.4554 0.4654 17 6 9.5081 -1.7859 -0.8260 18 6 8.0361 -1.3732 -0.9079 19 16 4.4570 -2.6261 -0.0487 20 1 -0.4851 -0.8366 -0.0755 21 1 7.2944 -3.1536 0.0574 22 1 7.7977 -0.6464 1.7288 23 1 7.3679 -2.2582 2.3528 24 1 9.4454 -3.1977 1.4141 25 1 9.8248 -1.8294 2.4878 26 1 9.5939 -2.8604 -0.9875 27 1 10.0770 -1.2567 -1.5905 28 1 7.6295 -1.6644 -1.8764 29 1 7.9533 -0.2931 -0.7868 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260349966.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:22 Heat of formation + Delta-G solvation = -30.791068 kcal Electronic energy + Delta-G solvation = -14892.174653 eV Core-core repulsion = 12326.704876 eV Total energy + Delta-G solvation = -2565.469777 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.53762 -38.72256 -34.66336 -33.86012 -30.92905 -30.32651 -27.33706 -24.52292 -23.32166 -22.90676 -20.81836 -19.57053 -17.61636 -17.46532 -15.93444 -15.86391 -14.69243 -14.48425 -14.29318 -14.15553 -13.56547 -13.32441 -12.95736 -12.19971 -12.16655 -12.03343 -11.19565 -11.09980 -11.07725 -10.55300 -10.35841 -10.26318 -10.10004 -9.62183 -9.45705 -8.85645 -8.54530 -8.33958 -8.28868 -7.76840 -5.23817 2.01973 2.51994 2.95310 3.40787 3.41952 3.78188 3.98747 4.00722 4.19971 4.73194 5.04784 5.05485 5.08906 5.20082 5.38771 5.50869 5.57458 5.78454 5.85483 5.89598 6.14087 6.22711 6.39782 6.47260 6.61749 6.89243 6.98708 7.29295 7.42144 7.63091 7.97611 9.50447 10.24608 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.046240 B = 0.006799 C = 0.006372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.388243 B = 4117.466259 C = 4393.502924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.056 3.944 3 Si 1.115 2.885 4 H -0.307 1.307 5 H -0.256 1.256 6 H -0.276 1.276 7 C -0.402 4.402 8 H 0.096 0.904 9 C 0.159 3.841 10 N -0.420 5.420 11 N -0.209 5.209 12 C -0.127 4.127 13 C 0.027 3.973 14 C -0.143 4.143 15 C 0.063 3.937 16 O -0.386 6.386 17 C 0.063 3.937 18 C -0.143 4.143 19 S -0.081 6.081 20 H 0.292 0.708 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.091 0.909 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.646 -4.663 -0.207 11.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.173 4.173 3 Si 0.942 3.058 4 H -0.237 1.237 5 H -0.182 1.182 6 H -0.202 1.202 7 C -0.447 4.447 8 H 0.114 0.886 9 C -0.088 4.088 10 N -0.273 5.273 11 N -0.047 5.047 12 C -0.409 4.409 13 C 0.004 3.996 14 C -0.182 4.182 15 C -0.014 4.014 16 O -0.305 6.305 17 C -0.014 4.014 18 C -0.182 4.182 19 S 0.165 5.835 20 H 0.104 0.896 21 H 0.089 0.911 22 H 0.099 0.901 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.600 -2.760 -0.069 10.953 hybrid contribution -0.429 -2.314 -0.149 2.359 sum 10.171 -5.074 -0.218 11.369 Atomic orbital electron populations 1.70605 1.07861 1.33535 1.26713 1.27901 0.95138 1.05487 0.88771 0.82630 0.72005 0.69659 0.81533 1.23686 1.18184 1.20203 1.20327 0.88547 0.97507 1.38291 0.88617 1.25908 0.99012 0.87932 0.95955 1.71579 0.95900 1.23373 1.36422 1.70359 1.08741 1.17497 1.08105 1.26913 0.98591 0.92206 1.23183 1.19158 0.87212 0.98263 0.94984 1.22223 0.95014 1.03577 0.97374 1.22599 0.92573 0.95908 0.90301 1.87892 1.58644 1.69283 1.14636 1.22598 0.94284 0.99297 0.85196 1.22227 0.94483 1.02539 0.98942 1.83867 1.02393 1.18450 1.78817 0.89591 0.91079 0.90125 0.91158 0.93523 0.89071 0.93521 0.89062 0.91129 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.99 13.65 55.56 0.76 -18.24 15 2 C 0.06 1.41 5.52 -17.28 -0.10 1.31 15 3 Si 1.11 26.61 25.90 -169.99 -4.40 22.21 15 4 H -0.31 -6.99 7.11 56.52 0.40 -6.59 15 5 H -0.26 -6.38 6.76 56.52 0.38 -6.00 15 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 7 C -0.40 -10.28 9.86 -38.14 -0.38 -10.66 15 8 H 0.10 2.37 8.06 -52.49 -0.42 1.95 15 9 C 0.16 4.12 6.94 -16.75 -0.12 4.00 15 10 N -0.42 -11.27 6.98 31.56 0.22 -11.05 15 11 N -0.21 -5.25 11.60 32.68 0.38 -4.87 15 12 C -0.13 -2.78 6.05 -13.02 -0.08 -2.85 15 13 C 0.03 0.46 2.72 -91.59 -0.25 0.21 15 14 C -0.14 -2.22 5.40 -26.60 -0.14 -2.36 15 15 C 0.06 0.81 6.84 37.20 0.25 1.06 15 16 O -0.39 -5.56 10.77 -35.23 -0.38 -5.94 15 17 C 0.06 0.81 6.84 37.21 0.25 1.06 15 18 C -0.14 -2.22 5.40 -26.59 -0.14 -2.37 15 19 S -0.08 -1.82 23.23 -107.50 -2.50 -4.32 15 20 H 0.29 6.78 8.72 -40.82 -0.36 6.42 15 21 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 23 H 0.07 1.07 8.14 -51.93 -0.42 0.64 15 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 15 25 H 0.09 1.01 8.14 -51.93 -0.42 0.58 15 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 15 27 H 0.09 1.01 8.14 -51.93 -0.42 0.58 15 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 LS Contribution 258.73 15.07 3.90 3.90 Total: -1.00 -28.04 258.73 -6.11 -34.15 By element: Atomic # 1 Polarization: -1.85 SS G_CDS: -3.40 Total: -5.25 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -0.69 Total: -10.60 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 1.36 Total: -34.15 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.38 Total: -5.94 kcal Atomic # 14 Polarization: 26.61 SS G_CDS: -4.40 Total: 22.21 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -2.50 Total: -4.32 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.04 -6.11 -34.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260349966.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.359 kcal (2) G-P(sol) polarization free energy of solvation -28.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds