Wall clock time and date at job start Mon Mar 30 2020 03:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86802 * 119.99810 * 2 1 4 4 H 1.48495 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47059 * 300.00183 * 3 2 1 6 6 H 1.48504 * 109.47105 * 59.99916 * 3 2 1 7 7 C 1.40348 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.39904 * 120.00165 * 0.02562 * 7 2 1 10 10 N 1.32860 * 126.46547 * 359.97170 * 9 7 2 11 11 N 1.28678 * 109.00205 * 180.02562 * 10 9 7 12 12 C 1.31126 * 109.59486 * 0.02562 * 11 10 9 13 13 C 1.50703 * 126.05746 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.38807 * 179.82309 * 13 12 11 15 15 C 1.52581 * 109.38926 * 60.02098 * 13 12 11 16 16 C 1.52580 * 110.72272 * 169.27617 * 15 13 12 17 17 C 1.53096 * 109.95688 * 70.67615 * 16 15 13 18 18 S 1.81748 * 108.83974 * 296.97129 * 17 16 15 19 19 C 1.53102 * 109.30786 * 299.57426 * 13 12 11 20 20 O 1.34308 * 107.88368 * 0.22454 * 12 11 10 21 21 H 0.97001 * 120.00315 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.23074 * 48.95612 * 15 13 12 23 23 H 1.09001 * 109.19089 * 289.57355 * 15 13 12 24 24 H 1.08999 * 109.39287 * 310.52895 * 16 15 13 25 25 H 1.08998 * 109.30983 * 190.77311 * 16 15 13 26 26 H 1.08998 * 109.57729 * 56.78187 * 17 16 15 27 27 H 1.09010 * 109.57773 * 177.16828 * 17 16 15 28 28 H 1.08997 * 109.57493 * 302.93528 * 19 13 12 29 29 H 1.09003 * 109.57124 * 63.31920 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.7002 1.3465 0.0006 5 1 1.8814 2.3965 -1.2125 6 1 1.8814 2.3965 1.2125 7 6 2.0080 -1.2154 0.0005 8 1 3.0880 -1.2154 0.0010 9 6 1.3086 -2.4271 0.0005 10 7 -0.0116 -2.5768 0.0006 11 7 -0.2908 -3.8329 0.0011 12 6 0.8196 -4.5302 0.0020 13 6 0.9229 -6.0337 0.0033 14 1 1.9735 -6.3242 0.0007 15 6 0.2404 -6.5895 -1.2430 16 6 0.5510 -8.0737 -1.4122 17 6 -0.1732 -8.8853 -0.3349 18 16 0.4585 -8.3911 1.2961 19 6 0.2459 -6.5865 1.2604 20 8 1.8487 -3.6671 0.0070 21 1 -0.4851 0.8400 -0.0004 22 1 0.5952 -6.0464 -2.1190 23 1 -0.8375 -6.4566 -1.1506 24 1 1.6258 -8.2311 -1.3224 25 1 0.2183 -8.4016 -2.3970 26 1 -1.2439 -8.6879 -0.3870 27 1 0.0122 -9.9480 -0.4916 28 1 0.7051 -6.1470 2.1458 29 1 -0.8167 -6.3442 1.2393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260396373.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:41 Heat of formation + Delta-G solvation = 4.335988 kcal Electronic energy + Delta-G solvation = -14868.050065 eV Core-core repulsion = 12304.103511 eV Total energy + Delta-G solvation = -2563.946554 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.76122 -36.95020 -34.13149 -33.80062 -32.07932 -29.18357 -27.12746 -25.95310 -23.29639 -21.74557 -21.19069 -19.72816 -17.69796 -16.78158 -15.61310 -15.34173 -14.98062 -14.83612 -14.33681 -13.70114 -13.36761 -13.23964 -12.86763 -12.78762 -11.81300 -11.45410 -11.43124 -11.29211 -11.12921 -10.75768 -10.61334 -10.48525 -10.40790 -9.83457 -9.78440 -9.59006 -8.73600 -7.97814 -7.60094 -6.90540 -4.92915 1.85611 2.54385 2.76268 2.95951 3.02845 3.16143 3.70389 4.15914 4.22812 4.76321 4.89990 4.93989 5.06078 5.16949 5.33672 5.50666 5.59571 5.75001 5.78443 5.84540 6.04040 6.11983 6.29972 6.46277 6.69411 6.96594 7.32328 7.46565 8.00365 8.22136 8.47804 10.01979 10.48664 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.065427 B = 0.005236 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.854201 B = 5345.822064 C = 5378.424146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.722 5.722 2 C 0.072 3.928 3 Si 0.934 3.066 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.423 4.423 8 H 0.096 0.904 9 C 0.290 3.710 10 N -0.360 5.360 11 N -0.268 5.268 12 C 0.009 3.991 13 C 0.041 3.959 14 H 0.090 0.910 15 C -0.118 4.118 16 C -0.119 4.119 17 C -0.081 4.081 18 S -0.277 6.277 19 C -0.062 4.062 20 O -0.272 6.272 21 H 0.285 0.715 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 -9.923 -1.397 10.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.155 4.155 3 Si 0.756 3.244 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.459 4.459 8 H 0.114 0.886 9 C 0.106 3.894 10 N -0.215 5.215 11 N -0.119 5.119 12 C -0.203 4.203 13 C 0.019 3.981 14 H 0.109 0.891 15 C -0.156 4.156 16 C -0.158 4.158 17 C -0.229 4.229 18 S -0.050 6.050 19 C -0.211 4.211 20 O -0.160 6.160 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.595 -10.185 -0.552 10.217 hybrid contribution 1.114 1.294 -0.892 1.927 sum 1.710 -8.890 -1.444 9.168 Atomic orbital electron populations 1.69940 1.07345 1.29456 1.27822 1.25963 0.95126 1.01166 0.93227 0.85846 0.80382 0.79260 0.78902 1.18075 1.19374 1.19367 1.18288 0.94820 0.85632 1.47158 0.88550 1.23789 0.89064 0.83110 0.93485 1.75740 1.10114 1.04193 1.31427 1.74068 1.25358 1.00619 1.11887 1.26140 0.82741 0.93725 1.17713 1.19160 1.00808 0.84033 0.94055 0.89140 1.21552 1.01807 0.94507 0.97782 1.21755 1.01259 0.94684 0.98126 1.23453 1.02678 1.02912 0.93837 1.86724 1.85105 1.08951 1.24186 1.23551 1.05054 0.91179 1.01322 1.84697 1.37965 1.17315 1.76070 0.90382 0.90775 0.90764 0.90567 0.90692 0.89741 0.88048 0.87741 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.32 11.93 55.57 0.66 -18.65 15 2 C 0.07 1.80 5.50 -17.27 -0.10 1.70 15 3 Si 0.93 18.02 29.56 -169.99 -5.03 12.99 15 4 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 5 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 7 C -0.42 -11.42 9.46 -38.17 -0.36 -11.78 15 8 H 0.10 2.39 7.85 -52.49 -0.41 1.98 15 9 C 0.29 8.37 7.85 -16.48 -0.13 8.24 15 10 N -0.36 -10.77 10.52 30.64 0.32 -10.45 15 11 N -0.27 -7.21 12.25 32.68 0.40 -6.81 15 12 C 0.01 0.22 6.93 -12.58 -0.09 0.14 15 13 C 0.04 0.73 2.51 -91.93 -0.23 0.50 15 14 H 0.09 1.53 8.06 -51.93 -0.42 1.11 15 15 C -0.12 -1.79 4.91 -27.16 -0.13 -1.92 15 16 C -0.12 -1.36 5.75 -26.90 -0.15 -1.52 15 17 C -0.08 -0.89 6.45 37.21 0.24 -0.65 15 18 S -0.28 -3.84 22.33 -107.50 -2.40 -6.24 15 19 C -0.06 -1.01 5.71 37.21 0.21 -0.80 15 20 O -0.27 -7.28 10.90 2.99 0.03 -7.25 15 21 H 0.28 6.74 8.29 -40.82 -0.34 6.41 15 22 H 0.07 1.19 8.08 -51.93 -0.42 0.77 15 23 H 0.07 1.17 8.08 -51.93 -0.42 0.75 15 24 H 0.08 0.86 8.06 -51.93 -0.42 0.44 15 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.10 0.92 8.14 -51.92 -0.42 0.50 15 28 H 0.10 1.76 8.14 -51.93 -0.42 1.33 15 29 H 0.09 1.59 8.14 -51.93 -0.42 1.17 15 LS Contribution 263.01 15.07 3.96 3.96 Total: -1.00 -30.91 263.01 -6.12 -37.03 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -3.34 Total: 1.51 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.74 Total: -6.09 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 1.39 Total: -35.91 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.03 Total: -7.25 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -2.40 Total: -6.24 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.91 -6.12 -37.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260396373.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.369 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds