Wall clock time and date at job start Mon Mar 30 2020 04:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76196 * 99.99976 * 2 1 4 4 N 1.32783 * 119.66399 * 0.02562 * 3 2 1 5 5 N 1.28750 * 121.23357 * 179.97438 * 4 3 2 6 6 C 1.32214 * 120.48513 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.34193 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.46588 * 164.99767 * 7 6 5 9 9 N 1.46899 * 109.47099 * 44.99869 * 7 6 5 10 10 C 1.50694 * 109.47288 * 284.99861 * 7 6 5 11 11 H 1.08006 * 120.00130 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00353 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99426 * 359.97438 * 12 10 7 14 14 Si 1.86799 * 120.00108 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.47006 * 89.99930 * 14 12 10 16 16 H 1.48501 * 109.46857 * 209.99644 * 14 12 10 17 17 H 1.48498 * 109.47012 * 329.99338 * 14 12 10 18 18 C 1.38709 * 119.30673 * 0.24941 * 6 5 4 19 19 C 1.50709 * 120.57642 * 179.74608 * 18 6 5 20 20 N 1.32396 * 118.84505 * 359.49596 * 18 6 5 21 21 H 1.09001 * 109.47240 * 299.99959 * 1 2 3 22 22 H 1.09000 * 109.47095 * 60.00337 * 1 2 3 23 23 H 1.09004 * 109.47363 * 180.02562 * 1 2 3 24 24 H 1.00894 * 110.99995 * 299.99527 * 9 7 6 25 25 H 1.00903 * 110.99955 * 63.95589 * 9 7 6 26 26 H 0.96998 * 119.99514 * 180.02562 * 13 12 10 27 27 H 1.09004 * 109.46815 * 90.00219 * 19 18 6 28 28 H 1.08997 * 109.47254 * 210.00244 * 19 18 6 29 29 H 1.08999 * 109.47062 * 330.00307 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0938 2.5827 0.0005 5 7 1.2825 3.8563 0.0010 6 6 2.5079 4.3528 0.0016 7 6 2.7251 5.8441 0.0016 8 1 3.7597 6.0605 0.2681 9 7 1.8261 6.4698 0.9804 10 6 2.4343 6.3941 -1.3709 11 1 2.1237 5.7301 -2.1641 12 6 2.5658 7.7448 -1.6145 13 7 2.9445 8.5532 -0.6487 14 14 2.2046 8.4266 -3.3157 15 1 0.7708 8.8029 -3.4039 16 1 3.0468 9.6256 -3.5574 17 1 2.5092 7.3935 -4.3379 18 6 3.5914 3.4867 -0.0037 19 6 5.0004 4.0215 -0.0090 20 7 3.3662 2.1820 0.0011 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.8605 6.2836 0.7552 25 1 2.0441 6.1658 1.9176 26 1 3.0367 9.5035 -0.8200 27 1 5.3443 4.1494 1.0174 28 1 5.6538 3.3189 -0.5262 29 1 5.0221 4.9830 -0.5220 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260412836.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:52 Heat of formation + Delta-G solvation = 66.645129 kcal Electronic energy + Delta-G solvation = -14916.697106 eV Core-core repulsion = 12387.745231 eV Total energy + Delta-G solvation = -2528.951875 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -41.27756 -35.49532 -34.92118 -32.44240 -30.93107 -29.43392 -28.30342 -26.58163 -24.83132 -23.29480 -21.24266 -18.44491 -17.80966 -16.56130 -15.40637 -15.32793 -14.76953 -14.31168 -13.91364 -13.58790 -13.54552 -12.92290 -12.75152 -12.57588 -12.28227 -11.84538 -11.55533 -11.27151 -11.10844 -10.88767 -10.79366 -10.63458 -10.14560 -9.78269 -9.19346 -8.87689 -8.53678 -7.75571 -7.28224 -6.02127 -4.18205 0.89417 1.13585 1.25487 2.12511 3.28506 3.35396 3.38211 3.80553 4.09341 4.38930 4.55543 4.76602 5.08228 5.16414 5.23697 5.41600 5.48483 5.76954 5.78059 5.95440 6.15470 6.22940 6.49334 7.09689 7.24903 7.75616 7.91933 8.44272 8.82423 8.86162 8.95917 9.50858 11.02094 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.034600 B = 0.006633 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.045254 B = 4220.260313 C = 4419.515860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.006 6.006 3 C 0.203 3.797 4 N -0.295 5.295 5 N -0.181 5.181 6 C 0.025 3.975 7 C 0.275 3.725 8 H 0.069 0.931 9 N -0.800 5.800 10 C -0.533 4.533 11 H 0.051 0.949 12 C 0.089 3.911 13 N -0.842 5.842 14 Si 0.889 3.111 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.275 1.275 18 C 0.164 3.836 19 C -0.107 4.107 20 N -0.465 5.465 21 H 0.090 0.910 22 H 0.091 0.909 23 H 0.105 0.895 24 H 0.331 0.669 25 H 0.297 0.703 26 H 0.259 0.741 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.178 -12.184 2.383 12.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.224 5.776 3 C -0.175 4.175 4 N -0.145 5.145 5 N -0.030 5.030 6 C -0.129 4.129 7 C 0.162 3.838 8 H 0.086 0.914 9 N -0.325 5.325 10 C -0.572 4.572 11 H 0.070 0.930 12 C -0.119 4.119 13 N -0.476 5.476 14 Si 0.717 3.283 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.200 1.200 18 C 0.003 3.997 19 C -0.164 4.164 20 N -0.188 5.188 21 H 0.109 0.891 22 H 0.110 0.890 23 H 0.124 0.876 24 H 0.144 0.856 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.214 -12.692 2.213 12.885 hybrid contribution -0.653 0.724 -0.774 1.245 sum -0.439 -11.968 1.438 12.062 Atomic orbital electron populations 1.23552 0.94131 1.06193 1.07437 1.85483 1.06882 0.93716 1.91563 1.26212 0.89934 1.01968 0.99395 1.74113 1.28162 0.98622 1.13614 1.73475 1.20953 1.03225 1.05345 1.25899 0.90068 1.04902 0.92058 1.18405 0.95404 0.75969 0.94013 0.91375 1.59195 1.07119 1.63951 1.02275 1.20642 1.50461 0.92983 0.93105 0.93026 1.24874 0.93957 0.96699 0.96387 1.70080 1.43053 1.03591 1.30893 0.86663 0.78501 0.78577 0.84600 1.20494 1.21046 1.20041 1.22682 0.99150 0.88592 0.89293 1.20903 0.88572 1.03039 1.03925 1.68881 1.21071 1.15829 1.13024 0.89093 0.89025 0.87615 0.85624 0.89342 0.93084 0.89427 0.90091 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.64 101.05 0.97 -0.62 15 2 S -0.01 -0.08 22.91 -107.50 -2.46 -2.54 15 3 C 0.20 3.80 7.92 -90.45 -0.72 3.09 15 4 N -0.30 -5.97 10.33 30.23 0.31 -5.65 15 5 N -0.18 -4.01 11.04 33.66 0.37 -3.64 15 6 C 0.02 0.53 5.73 -82.25 -0.47 0.06 15 7 C 0.27 6.43 2.54 -70.02 -0.18 6.25 15 8 H 0.07 1.60 6.04 -51.93 -0.31 1.29 15 9 N -0.80 -18.43 8.49 -6.65 -0.06 -18.49 15 10 C -0.53 -14.06 8.71 -34.44 -0.30 -14.36 15 11 H 0.05 1.42 7.74 -52.48 -0.41 1.01 15 12 C 0.09 2.36 5.39 -17.82 -0.10 2.27 15 13 N -0.84 -23.11 12.77 55.43 0.71 -22.40 15 14 Si 0.89 20.77 29.54 -169.99 -5.02 15.74 15 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 18 C 0.16 3.16 6.82 -82.17 -0.56 2.60 15 19 C -0.11 -1.64 9.48 36.01 0.34 -1.30 15 20 N -0.47 -8.94 10.46 -9.53 -0.10 -9.04 15 21 H 0.09 1.05 8.12 -51.92 -0.42 0.62 15 22 H 0.09 1.09 8.12 -51.92 -0.42 0.67 15 23 H 0.11 0.82 8.14 -51.91 -0.42 0.40 15 24 H 0.33 7.72 8.57 -39.30 -0.34 7.38 15 25 H 0.30 6.10 9.06 -39.29 -0.36 5.74 15 26 H 0.26 6.82 8.31 -40.82 -0.34 6.48 15 27 H 0.09 1.17 8.14 -51.93 -0.42 0.74 15 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 29 H 0.11 1.76 6.49 -51.93 -0.34 1.43 15 LS Contribution 269.96 15.07 4.07 4.07 Total: -1.00 -29.68 269.96 -6.18 -35.87 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -3.00 Total: 8.11 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.01 Total: -2.02 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 1.24 Total: -59.22 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.46 Total: -2.54 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.68 -6.18 -35.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412836.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.512 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds