Wall clock time and date at job start Mon Mar 30 2020 04:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76196 * 99.99976 * 2 1 4 4 N 1.32783 * 119.66399 * 0.02562 * 3 2 1 5 5 N 1.28750 * 121.23357 * 179.97438 * 4 3 2 6 6 C 1.32214 * 120.48513 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.34193 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.46588 * 164.99767 * 7 6 5 9 9 N 1.46899 * 109.47099 * 44.99869 * 7 6 5 10 10 C 1.50694 * 109.47288 * 284.99861 * 7 6 5 11 11 H 1.08006 * 120.00130 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00353 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99426 * 359.97438 * 12 10 7 14 14 Si 1.86799 * 120.00108 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.47006 * 89.99930 * 14 12 10 16 16 H 1.48501 * 109.46857 * 209.99644 * 14 12 10 17 17 H 1.48498 * 109.47012 * 329.99338 * 14 12 10 18 18 C 1.38709 * 119.30673 * 0.24941 * 6 5 4 19 19 C 1.50709 * 120.57642 * 179.74608 * 18 6 5 20 20 N 1.32396 * 118.84505 * 359.49596 * 18 6 5 21 21 H 1.09001 * 109.47240 * 299.99959 * 1 2 3 22 22 H 1.09000 * 109.47095 * 60.00337 * 1 2 3 23 23 H 1.09004 * 109.47363 * 180.02562 * 1 2 3 24 24 H 1.00894 * 110.99995 * 299.99527 * 9 7 6 25 25 H 1.00903 * 110.99955 * 63.95589 * 9 7 6 26 26 H 0.96998 * 119.99514 * 180.02562 * 13 12 10 27 27 H 1.09004 * 109.46815 * 90.00219 * 19 18 6 28 28 H 1.08997 * 109.47254 * 210.00244 * 19 18 6 29 29 H 1.08999 * 109.47062 * 330.00307 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0938 2.5827 0.0005 5 7 1.2825 3.8563 0.0010 6 6 2.5079 4.3528 0.0016 7 6 2.7251 5.8441 0.0016 8 1 3.7597 6.0605 0.2681 9 7 1.8261 6.4698 0.9804 10 6 2.4343 6.3941 -1.3709 11 1 2.1237 5.7301 -2.1641 12 6 2.5658 7.7448 -1.6145 13 7 2.9445 8.5532 -0.6487 14 14 2.2046 8.4266 -3.3157 15 1 0.7708 8.8029 -3.4039 16 1 3.0468 9.6256 -3.5574 17 1 2.5092 7.3935 -4.3379 18 6 3.5914 3.4867 -0.0037 19 6 5.0004 4.0215 -0.0090 20 7 3.3662 2.1820 0.0011 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.8605 6.2836 0.7552 25 1 2.0441 6.1658 1.9176 26 1 3.0367 9.5035 -0.8200 27 1 5.3443 4.1494 1.0174 28 1 5.6538 3.3189 -0.5262 29 1 5.0221 4.9830 -0.5220 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260412836.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:50 Heat of formation + Delta-G solvation = 44.850162 kcal Electronic energy + Delta-G solvation = -14917.642207 eV Core-core repulsion = 12387.745231 eV Total energy + Delta-G solvation = -2529.896976 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.79064 -37.22055 -36.41913 -34.26843 -32.68352 -30.58503 -29.48956 -28.41263 -26.56430 -24.72545 -23.02919 -20.00186 -19.10564 -18.50121 -17.06116 -16.93854 -16.32895 -15.93800 -15.63382 -14.76961 -14.67539 -14.41454 -14.15293 -13.88240 -13.58020 -13.44982 -13.15951 -12.95210 -12.76620 -12.61629 -12.47489 -11.97367 -11.82426 -11.52506 -10.91748 -10.61131 -10.37240 -9.13813 -8.90028 -8.03973 -6.25139 -0.60400 -0.41229 0.00945 1.07014 1.42406 1.45479 1.52897 2.25602 2.47061 2.64576 3.05331 3.19270 3.32806 3.90253 3.99522 4.25183 4.31133 4.38224 4.62983 4.69143 4.70044 4.89874 5.13701 5.32997 5.66719 5.75460 5.99414 6.52054 6.95177 7.12459 7.29558 7.46333 8.99371 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.034600 B = 0.006633 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.045254 B = 4220.260313 C = 4419.515860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S 0.026 5.974 3 C 0.191 3.809 4 N -0.310 5.310 5 N -0.204 5.204 6 C 0.005 3.995 7 C 0.281 3.719 8 H 0.066 0.934 9 N -0.809 5.809 10 C -0.544 4.544 11 H 0.032 0.968 12 C 0.050 3.950 13 N -0.867 5.867 14 Si 0.944 3.056 15 H -0.282 1.282 16 H -0.275 1.275 17 H -0.276 1.276 18 C 0.166 3.834 19 C -0.103 4.103 20 N -0.472 5.472 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.146 0.854 24 H 0.327 0.673 25 H 0.310 0.690 26 H 0.261 0.739 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.390 -13.634 2.259 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.256 5.744 3 C -0.186 4.186 4 N -0.160 5.160 5 N -0.052 5.052 6 C -0.151 4.151 7 C 0.169 3.831 8 H 0.084 0.916 9 N -0.334 5.334 10 C -0.583 4.583 11 H 0.050 0.950 12 C -0.156 4.156 13 N -0.501 5.501 14 Si 0.770 3.230 15 H -0.208 1.208 16 H -0.200 1.200 17 H -0.202 1.202 18 C 0.005 3.995 19 C -0.160 4.160 20 N -0.195 5.195 21 H 0.106 0.894 22 H 0.103 0.897 23 H 0.164 0.836 24 H 0.139 0.861 25 H 0.121 0.879 26 H 0.070 0.930 27 H 0.130 0.870 28 H 0.120 0.880 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.428 -14.165 2.090 14.325 hybrid contribution -0.769 0.985 -0.712 1.438 sum -0.341 -13.180 1.378 13.257 Atomic orbital electron populations 1.23721 0.91817 1.08622 1.06938 1.85420 1.09335 0.89569 1.90105 1.27141 0.89652 1.04286 0.97509 1.74077 1.28696 0.98032 1.15219 1.73324 1.21672 1.04561 1.05651 1.25564 0.90864 1.04237 0.94431 1.18108 0.95065 0.77280 0.92688 0.91642 1.59090 1.06769 1.64439 1.03105 1.20793 1.50286 0.93074 0.94191 0.94980 1.25453 0.93897 0.96938 0.99265 1.70156 1.43925 1.03730 1.32313 0.85812 0.78059 0.78064 0.81058 1.20820 1.20046 1.20154 1.23154 1.00104 0.88590 0.87685 1.20992 0.86815 1.02634 1.05554 1.69060 1.21188 1.15478 1.13774 0.89364 0.89718 0.83566 0.86132 0.87891 0.93016 0.86966 0.87954 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.64 113.37 1.09 -1.68 15 2 S 0.03 0.67 22.91 -56.49 -1.29 -0.62 15 3 C 0.19 6.94 7.92 180.29 1.43 8.37 15 4 N -0.31 -12.43 10.33 -58.27 -0.60 -13.04 15 5 N -0.20 -9.10 11.04 -47.42 -0.52 -9.63 15 6 C 0.00 0.20 5.73 42.62 0.24 0.44 15 7 C 0.28 13.30 2.54 43.42 0.11 13.41 15 8 H 0.07 3.10 6.04 -2.38 -0.01 3.09 15 9 N -0.81 -37.63 8.49 -174.95 -1.49 -39.11 15 10 C -0.54 -29.12 8.71 25.60 0.22 -28.89 15 11 H 0.03 1.80 7.74 -2.91 -0.02 1.78 15 12 C 0.05 2.67 5.39 84.65 0.46 3.13 15 13 N -0.87 -47.62 12.77 21.45 0.27 -47.34 15 14 Si 0.94 42.76 29.54 68.60 2.03 44.79 15 15 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 16 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 18 C 0.17 6.27 6.82 42.59 0.29 6.56 15 19 C -0.10 -3.02 9.48 71.24 0.68 -2.34 15 20 N -0.47 -17.57 10.46 -184.05 -1.92 -19.49 15 21 H 0.09 1.84 8.12 -2.39 -0.02 1.82 15 22 H 0.08 1.84 8.12 -2.40 -0.02 1.82 15 23 H 0.15 1.69 8.14 -2.39 -0.02 1.67 15 24 H 0.33 15.52 8.57 -89.70 -0.77 14.75 15 25 H 0.31 12.82 9.06 -89.69 -0.81 12.01 15 26 H 0.26 13.68 8.31 -92.71 -0.77 12.91 15 27 H 0.11 2.76 8.14 -2.38 -0.02 2.74 15 28 H 0.10 2.56 8.14 -2.39 -0.02 2.54 15 29 H 0.09 3.07 6.49 -2.39 -0.02 3.05 15 Total: -1.00 -63.02 269.96 0.61 -62.42 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.38 Total: 23.03 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 4.52 Total: -1.01 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -4.26 Total: -128.61 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -1.29 Total: -0.62 kcal Total: -63.02 0.61 -62.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412836.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.266 kcal (2) G-P(sol) polarization free energy of solvation -63.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds