Wall clock time and date at job start Mon Mar 30 2020 04:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36892 * 120.00026 * 2 1 4 4 H 1.08001 * 120.00086 * 200.89340 * 3 2 1 5 5 C 1.38724 * 120.00350 * 20.89735 * 3 2 1 6 6 N 1.31617 * 119.99478 * 14.67563 * 5 3 2 7 7 Si 1.86798 * 120.00220 * 194.67349 * 5 3 2 8 8 H 1.48504 * 109.46773 * 85.00227 * 7 5 3 9 9 H 1.48492 * 109.47106 * 205.00434 * 7 5 3 10 10 H 1.48498 * 109.47118 * 325.00822 * 7 5 3 11 11 C 1.38179 * 119.99394 * 180.02562 * 2 1 3 12 12 N 1.29795 * 125.47244 * 0.02562 * 11 2 1 13 13 C 1.32239 * 117.81250 * 180.02562 * 12 11 2 14 14 C 1.34873 * 114.32261 * 0.03775 * 13 12 11 15 15 S 1.75721 * 108.95236 * 359.95259 * 14 13 12 16 16 C 1.51035 * 124.31416 * 179.97438 * 14 13 12 17 17 O 1.43309 * 108.22004 * 345.43206 * 16 14 13 18 18 C 1.43121 * 113.67289 * 49.97205 * 17 16 14 19 19 C 1.52425 * 124.52158 * 180.02562 * 13 12 11 20 20 H 1.08997 * 109.47503 * 275.03057 * 1 2 3 21 21 H 1.09001 * 109.47102 * 35.02745 * 1 2 3 22 22 H 1.08999 * 109.47513 * 155.02546 * 1 2 3 23 23 H 0.97005 * 119.99591 * 179.97438 * 6 5 3 24 24 H 1.08994 * 109.71880 * 105.12844 * 16 14 13 25 25 H 1.08997 * 109.71456 * 225.73974 * 16 14 13 26 26 H 1.09002 * 109.42422 * 168.85294 * 18 17 16 27 27 H 1.09004 * 109.42057 * 48.94677 * 18 17 16 28 28 H 1.08997 * 109.75047 * 282.75018 * 19 13 12 29 29 H 1.09000 * 109.74658 * 43.47507 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1855 0.0000 4 1 3.1762 1.2163 -0.3336 5 6 1.5244 2.3474 0.4285 6 7 0.3935 2.2776 1.0982 7 14 2.2876 4.0110 0.0551 8 1 1.8694 4.4547 -1.2990 9 1 1.8327 5.0018 1.0632 10 1 3.7676 3.8988 0.1040 11 6 2.1558 -1.1967 -0.0005 12 7 1.6168 -2.3775 -0.0015 13 6 2.4247 -3.4245 -0.0014 14 6 3.7371 -3.1135 0.0006 15 16 3.9092 -1.3647 0.0010 16 6 4.8532 -4.1310 0.0017 17 8 4.2962 -5.4067 0.3427 18 6 3.1405 -5.7534 -0.4269 19 6 1.9581 -4.8755 -0.0030 20 1 -0.3634 0.0901 1.0237 21 1 -0.3633 0.8415 -0.5898 22 1 -0.3634 -0.9315 -0.4339 23 1 -0.0434 3.0901 1.3982 24 1 5.3068 -4.1805 -0.9881 25 1 5.6063 -3.8499 0.7378 26 1 2.8932 -6.8014 -0.2575 27 1 3.3492 -5.5962 -1.4852 28 1 1.6287 -5.1576 0.9969 29 1 1.1375 -4.9977 -0.7099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260444631.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:53 Heat of formation + Delta-G solvation = -10.455787 kcal Electronic energy + Delta-G solvation = -14935.260347 eV Core-core repulsion = 12370.672373 eV Total energy + Delta-G solvation = -2564.587973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.71830 -39.12755 -37.52480 -34.06854 -32.41387 -31.14068 -28.77620 -27.14745 -25.08578 -24.89656 -22.30667 -20.08852 -19.34648 -18.36211 -17.77215 -16.94948 -16.49841 -16.00137 -15.75969 -15.71873 -15.20989 -14.61862 -14.33175 -13.78230 -13.53970 -13.23260 -13.22461 -12.83617 -12.73987 -12.66448 -12.14298 -11.95150 -11.49709 -11.33183 -10.82023 -10.47887 -10.08656 -9.77984 -8.69541 -8.39602 -6.00294 0.28544 0.61909 1.32645 1.39858 1.43822 1.52893 2.11465 2.23196 2.78009 2.88348 3.00477 3.70990 4.11723 4.26626 4.34516 4.49075 4.51968 4.56588 4.77227 4.79960 4.82529 5.01548 5.12726 5.15449 5.19969 5.52699 5.84645 6.17841 6.34355 6.98304 7.01839 7.59298 8.45629 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.049014 B = 0.006774 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.130083 B = 4132.500628 C = 4608.241296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.145 3.855 2 N -0.396 5.396 3 C -0.345 4.345 4 H 0.100 0.900 5 C 0.003 3.997 6 N -0.881 5.881 7 Si 1.003 2.997 8 H -0.264 1.264 9 H -0.273 1.273 10 H -0.261 1.261 11 C 0.301 3.699 12 N -0.628 5.628 13 C 0.124 3.876 14 C -0.392 4.392 15 S 0.001 5.999 16 C 0.171 3.829 17 O -0.389 6.389 18 C 0.067 3.933 19 C -0.071 4.071 20 H 0.047 0.953 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.282 0.718 24 H 0.069 0.931 25 H 0.098 0.902 26 H 0.133 0.867 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.120 -7.545 -3.410 9.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 N -0.092 5.092 3 C -0.474 4.474 4 H 0.118 0.882 5 C -0.203 4.203 6 N -0.515 5.515 7 Si 0.824 3.176 8 H -0.189 1.189 9 H -0.198 1.198 10 H -0.185 1.185 11 C -0.068 4.068 12 N -0.360 5.360 13 C -0.010 4.010 14 C -0.518 4.518 15 S 0.248 5.752 16 C 0.092 3.908 17 O -0.307 6.307 18 C -0.010 4.010 19 C -0.111 4.111 20 H 0.065 0.935 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.116 0.884 26 H 0.151 0.849 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.170 -6.542 -3.162 8.378 hybrid contribution -0.550 0.550 -0.074 0.781 sum 3.620 -5.993 -3.235 7.713 Atomic orbital electron populations 1.21317 0.78113 0.99389 1.01243 1.42292 1.05613 1.00317 1.60950 1.19958 0.99429 0.83794 1.44250 0.88192 1.26326 0.96822 1.03571 0.93596 1.70213 1.18145 1.31405 1.31751 0.84785 0.78906 0.75252 0.78611 1.18879 1.19782 1.18485 1.24305 0.91365 0.89467 1.01635 1.65820 1.37891 0.96548 1.35781 1.20750 0.88060 0.95307 0.96853 1.25692 0.99767 0.95709 1.30634 1.84082 1.07083 1.03320 1.80669 1.20722 0.90505 0.78827 1.00760 1.88004 1.44859 1.34643 1.63240 1.22767 0.83424 0.99651 0.95123 1.21175 0.99852 0.86462 1.03583 0.93452 0.92048 0.92970 0.90824 0.91305 0.88403 0.84942 0.92111 0.89692 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.06 8.85 127.77 1.13 8.19 15 2 N -0.40 -20.68 3.10 -543.31 -1.69 -22.36 15 3 C -0.34 -17.81 9.31 84.02 0.78 -17.03 15 4 H 0.10 5.06 7.07 -2.91 -0.02 5.04 15 5 C 0.00 0.14 5.07 84.84 0.43 0.57 15 6 N -0.88 -44.72 10.68 21.63 0.23 -44.49 15 7 Si 1.00 38.24 29.58 68.60 2.03 40.27 15 8 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 9 H -0.27 -10.09 7.11 99.48 0.71 -9.38 15 10 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 11 C 0.30 15.23 7.88 179.44 1.41 16.65 15 12 N -0.63 -30.47 9.72 -183.21 -1.78 -32.25 15 13 C 0.12 5.20 6.84 42.28 0.29 5.49 15 14 C -0.39 -15.72 6.48 25.02 0.16 -15.56 15 15 S 0.00 0.06 22.13 -56.49 -1.25 -1.19 15 16 C 0.17 5.36 7.23 71.34 0.52 5.88 15 17 O -0.39 -11.68 10.80 -148.98 -1.61 -13.29 15 18 C 0.07 1.65 6.75 72.06 0.49 2.14 15 19 C -0.07 -2.17 6.57 30.48 0.20 -1.97 15 20 H 0.05 2.43 7.39 -2.39 -0.02 2.41 15 21 H 0.06 2.97 7.24 -2.39 -0.02 2.95 15 22 H 0.05 2.41 7.49 -2.39 -0.02 2.39 15 23 H 0.28 13.26 8.31 -92.70 -0.77 12.49 15 24 H 0.07 1.90 8.14 -2.39 -0.02 1.89 15 25 H 0.10 2.86 8.14 -2.39 -0.02 2.84 15 26 H 0.13 2.27 8.14 -2.39 -0.02 2.25 15 27 H 0.06 1.41 8.08 -2.39 -0.02 1.39 15 28 H 0.08 2.54 8.14 -2.39 -0.02 2.52 15 29 H 0.10 2.68 8.14 -2.39 -0.02 2.66 15 Total: -1.00 -60.00 258.57 2.51 -57.49 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.16 Total: 11.46 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 5.41 Total: 4.35 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -3.23 Total: -99.09 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -1.61 Total: -13.29 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -1.25 Total: -1.19 kcal Total: -60.00 2.51 -57.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260444631.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.035 kcal (2) G-P(sol) polarization free energy of solvation -59.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds