Wall clock time and date at job start Mon Mar 30 2020 03:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.39989 * 126.05908 * 269.68796 * 10 9 7 12 12 C 1.31014 * 108.29789 * 179.90212 * 11 10 9 13 13 C 1.39478 * 108.51647 * 0.28513 * 12 11 10 14 14 C 1.34991 * 126.06287 * 89.99596 * 10 9 7 15 15 O 1.35755 * 126.11856 * 0.05004 * 14 10 9 16 16 C 1.50587 * 127.97712 * 180.13885 * 13 12 11 17 17 C 1.52766 * 110.88781 * 340.48717 * 16 13 12 18 18 S 1.81798 * 108.97421 * 52.57716 * 17 16 13 19 19 C 1.51205 * 124.91487 * 179.97438 * 12 11 10 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 0.96707 * 114.00091 * 89.97208 * 15 14 10 24 24 H 1.09005 * 109.19166 * 100.85099 * 16 13 12 25 25 H 1.09004 * 109.19796 * 220.12212 * 16 13 12 26 26 H 1.08997 * 109.55467 * 292.73583 * 17 16 13 27 27 H 1.09003 * 109.64202 * 172.47315 * 17 16 13 28 28 H 1.08998 * 109.68907 * 282.42962 * 19 12 11 29 29 H 1.08998 * 109.68759 * 43.00747 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7337 -4.2380 -1.1446 12 6 3.5477 -5.1853 -0.7491 13 6 3.5614 -5.2039 0.6454 14 6 2.7192 -4.2215 1.0783 15 8 2.4485 -3.9121 2.3721 16 6 4.3465 -6.1143 1.5523 17 6 4.8006 -7.3673 0.8058 18 16 5.6654 -6.8693 -0.7138 19 6 4.3255 -6.0983 -1.6699 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 1.6986 -4.3966 2.7439 24 1 5.2219 -5.5816 1.9242 25 1 3.7209 -6.4065 2.3958 26 1 3.9321 -7.9738 0.5490 27 1 5.4757 -7.9454 1.4369 28 1 3.6654 -6.8705 -2.0649 29 1 4.7467 -5.5190 -2.4915 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260652629.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:15 Heat of formation + Delta-G solvation = 25.811368 kcal Electronic energy + Delta-G solvation = -14957.450998 eV Core-core repulsion = 12394.435687 eV Total energy + Delta-G solvation = -2563.015311 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.90327 -36.80145 -34.80033 -33.23541 -31.79309 -29.48478 -27.96906 -26.26648 -23.59821 -22.30059 -20.62279 -19.27464 -17.62402 -16.83861 -16.03373 -15.54084 -15.07744 -14.54631 -14.29724 -14.07804 -13.61643 -13.22882 -12.95972 -12.51033 -12.31206 -11.89905 -11.74524 -11.55230 -11.09139 -10.90701 -10.73705 -10.25846 -9.96853 -9.80398 -9.79788 -8.67059 -8.43357 -7.76565 -7.58119 -6.29853 -4.36601 1.81240 2.36003 2.48232 3.03492 3.18494 3.23399 3.26106 3.33204 4.27725 4.40142 4.84886 4.99439 5.05695 5.11175 5.37558 5.40216 5.53031 5.73575 5.81586 6.07156 6.17328 6.35576 6.77470 6.88576 7.10499 7.28295 7.65312 7.81858 8.11301 8.34542 8.68541 9.29560 10.78417 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.038761 B = 0.006284 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.201908 B = 4454.532373 C = 4656.269138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.255 3.745 10 N -0.324 5.324 11 N -0.269 5.269 12 C 0.053 3.947 13 C -0.271 4.271 14 C 0.268 3.732 15 O -0.459 6.459 16 C -0.025 4.025 17 C -0.076 4.076 18 S -0.251 6.251 19 C 0.008 3.992 20 H 0.269 0.731 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.388 0.612 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.330 -13.247 2.557 14.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.137 4.137 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.138 3.862 10 N -0.113 5.113 11 N -0.097 5.097 12 C -0.111 4.111 13 C -0.285 4.285 14 C 0.094 3.906 15 O -0.261 6.261 16 C -0.065 4.065 17 C -0.224 4.224 18 S -0.025 6.025 19 C -0.142 4.142 20 H 0.079 0.921 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.244 0.756 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.123 0.877 28 H 0.117 0.883 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.091 -12.156 1.315 13.660 hybrid contribution -1.079 0.648 1.164 1.715 sum 5.011 -11.508 2.480 12.795 Atomic orbital electron populations 1.69905 1.06060 1.27880 1.49258 1.24921 0.95012 0.99524 0.94272 0.86365 0.79426 0.81578 0.79060 1.19859 1.20881 1.19868 1.21220 0.93727 0.89497 1.52917 0.91788 1.19747 0.86095 0.80634 0.99713 1.49826 1.33348 1.26097 1.02027 1.77475 1.14755 1.09500 1.07986 1.21438 0.99426 0.97882 0.92400 1.19289 1.10726 1.05093 0.93375 1.18578 0.97325 0.93616 0.81082 1.84913 1.53622 1.68249 1.19299 1.19712 0.98787 0.92382 0.95624 1.23310 1.02602 1.00169 0.96323 1.86688 1.20060 1.75979 1.19818 1.21623 0.96439 0.98700 0.97446 0.92149 0.93015 0.92658 0.75632 0.90829 0.91147 0.89810 0.87709 0.88347 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 13.29 55.43 0.74 -24.60 15 2 C 0.07 1.83 5.46 -17.82 -0.10 1.74 15 3 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 15 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.54 -15.11 9.39 -34.44 -0.32 -15.44 15 8 H 0.06 1.88 7.81 -52.49 -0.41 1.47 15 9 C 0.26 6.57 6.14 -5.20 -0.03 6.53 15 10 N -0.32 -7.53 3.59 -62.57 -0.22 -7.75 15 11 N -0.27 -5.99 12.57 33.75 0.42 -5.57 15 12 C 0.05 0.98 6.94 -82.23 -0.57 0.41 15 13 C -0.27 -4.88 5.82 -104.86 -0.61 -5.49 15 14 C 0.27 5.43 7.90 -16.81 -0.13 5.30 15 15 O -0.46 -8.20 13.48 -18.97 -0.26 -8.45 15 16 C -0.03 -0.34 5.87 -28.06 -0.16 -0.51 15 17 C -0.08 -0.87 6.45 37.04 0.24 -0.63 15 18 S -0.25 -3.41 22.25 -107.50 -2.39 -5.80 15 19 C 0.01 0.11 6.86 36.25 0.25 0.36 15 20 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 21 H 0.05 1.32 8.13 -51.93 -0.42 0.90 15 22 H 0.06 1.49 8.14 -51.93 -0.42 1.07 15 23 H 0.39 4.70 9.06 45.56 0.41 5.11 15 24 H 0.07 1.05 8.14 -51.93 -0.42 0.62 15 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.10 0.96 8.14 -51.93 -0.42 0.54 15 28 H 0.10 1.24 8.14 -51.93 -0.42 0.82 15 29 H 0.12 1.65 8.14 -51.93 -0.42 1.23 15 LS Contribution 267.17 15.07 4.03 4.03 Total: -1.00 -31.42 267.17 -6.66 -38.08 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -2.51 Total: 1.27 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -1.44 Total: -7.73 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.94 Total: -37.92 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.26 Total: -8.45 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.39 Total: -5.80 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.42 -6.66 -38.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260652629.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.896 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds