Wall clock time and date at job start Mon Mar 30 2020 03:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76202 * 99.99981 * 2 1 4 4 N 1.32551 * 119.19698 * 179.97438 * 3 2 1 5 5 C 1.32419 * 120.88125 * 179.97438 * 4 3 2 6 6 C 1.50702 * 120.36160 * 179.97438 * 5 4 3 7 7 C 1.38256 * 119.27318 * 0.02562 * 5 4 3 8 8 C 1.50701 * 120.74016 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47107 * 269.97658 * 8 7 5 10 10 H 1.08004 * 119.99832 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00397 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99739 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00414 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47099 * 89.99791 * 13 11 9 15 15 H 1.48500 * 109.47181 * 209.99813 * 13 11 9 16 16 H 1.48499 * 109.47169 * 330.00065 * 13 11 9 17 17 C 1.39408 * 118.52015 * 359.97438 * 7 5 4 18 18 O 1.35512 * 120.46311 * 180.02562 * 17 7 5 19 19 N 1.32530 * 119.18969 * 0.26932 * 3 2 1 20 20 H 1.08999 * 109.46822 * 60.00796 * 1 2 3 21 21 H 1.09001 * 109.46917 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47067 * 300.00154 * 1 2 3 23 23 H 1.08999 * 109.46919 * 270.02821 * 6 5 4 24 24 H 1.09001 * 109.46797 * 30.02206 * 6 5 4 25 25 H 1.08994 * 109.46792 * 150.02285 * 6 5 4 26 26 H 1.08997 * 109.47041 * 29.97123 * 8 7 5 27 27 H 1.08995 * 109.46911 * 149.97377 * 8 7 5 28 28 H 0.97002 * 119.99958 * 180.02562 * 12 11 9 29 29 H 0.96700 * 114.00230 * 90.00118 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 3.3678 2.1711 0.0005 5 6 3.6360 3.4679 0.0000 6 6 5.0636 3.9505 0.0012 7 6 2.5919 4.3741 -0.0005 8 6 2.8592 5.8572 -0.0016 9 6 2.9479 6.3528 1.4188 10 1 2.8228 5.6628 2.2402 11 6 3.1877 7.6871 1.6698 12 7 3.3396 8.5274 0.6695 13 14 3.2970 8.3014 3.4305 14 1 4.7040 8.2163 3.8980 15 1 2.8397 9.7129 3.4915 16 1 2.4344 7.4634 4.3016 17 6 1.2863 3.8854 -0.0010 18 8 0.2333 4.7385 -0.0021 19 7 1.0888 2.5727 0.0054 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 5.4069 4.0669 1.0292 24 1 5.6932 3.2235 -0.5119 25 1 5.1232 4.9098 -0.5128 26 1 3.7996 6.0565 -0.5153 27 1 2.0479 6.3722 -0.5161 28 1 3.5087 9.4661 0.8461 29 1 -0.0718 4.9856 -0.8858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260770897.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:07 Heat of formation + Delta-G solvation = -6.563086 kcal Electronic energy + Delta-G solvation = -14871.512667 eV Core-core repulsion = 12307.093494 eV Total energy + Delta-G solvation = -2564.419173 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.61384 -37.11326 -34.56945 -32.99020 -31.60604 -29.05478 -28.56245 -27.08063 -24.29537 -22.33704 -21.49452 -18.60497 -17.53148 -16.81722 -16.46000 -15.18329 -14.81061 -14.49489 -13.89104 -13.45503 -13.34840 -13.18620 -12.50905 -12.36184 -12.26086 -12.16161 -11.63037 -11.19037 -11.13125 -10.72054 -10.66619 -10.34064 -9.84351 -9.81789 -9.48791 -8.93554 -8.85837 -8.47834 -7.42452 -6.13944 -4.17687 1.32250 1.42518 1.47532 2.26776 3.25686 3.32417 3.37615 3.86241 4.10318 4.38707 4.72109 5.13525 5.19225 5.21057 5.26297 5.54440 5.84456 5.87464 5.92415 6.10877 6.22838 6.45280 6.76108 7.35534 7.39461 7.43110 7.80069 7.87813 8.16366 8.30752 8.84264 9.46271 10.95596 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.035033 B = 0.006647 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.050874 B = 4211.311285 C = 4462.185293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.022 6.022 3 C 0.291 3.709 4 N -0.508 5.508 5 C 0.184 3.816 6 C -0.098 4.098 7 C -0.150 4.150 8 C 0.064 3.936 9 C -0.507 4.507 10 H 0.053 0.947 11 C 0.063 3.937 12 N -0.892 5.892 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.356 3.644 18 O -0.461 6.461 19 N -0.551 5.551 20 H 0.087 0.913 21 H 0.100 0.900 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.263 0.737 29 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.811 -11.476 -3.810 12.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.209 5.791 3 C -0.086 4.086 4 N -0.227 5.227 5 C 0.038 3.962 6 C -0.155 4.155 7 C -0.158 4.158 8 C 0.027 3.973 9 C -0.545 4.545 10 H 0.071 0.929 11 C -0.139 4.139 12 N -0.531 5.531 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.199 1.199 17 C 0.168 3.832 18 O -0.266 6.266 19 N -0.280 5.280 20 H 0.106 0.894 21 H 0.119 0.881 22 H 0.107 0.893 23 H 0.105 0.895 24 H 0.089 0.911 25 H 0.111 0.889 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.236 -13.200 -3.240 13.774 hybrid contribution -0.949 2.532 0.573 2.764 sum -3.185 -10.667 -2.667 11.448 Atomic orbital electron populations 1.23457 0.94519 1.05621 1.07114 1.85471 1.06484 0.94859 1.92256 1.24184 0.86506 0.99143 0.98760 1.68192 1.20732 1.17144 1.16658 1.21559 0.97420 0.86838 0.90423 1.20753 0.88893 1.01878 1.04026 1.22388 0.92179 1.02439 0.98795 1.18215 0.98366 0.82320 0.98437 1.20876 1.49491 0.93360 0.90794 0.92863 1.24938 0.95012 0.96622 0.97340 1.69932 1.48699 1.03809 1.30672 0.86522 0.78423 0.78090 0.84636 1.20469 1.21034 1.19860 1.19212 0.86612 0.85178 0.92232 1.84795 1.47763 1.61029 1.33042 1.68053 1.36122 1.04526 1.19326 0.89431 0.88128 0.89318 0.89489 0.91134 0.88930 0.94221 0.94765 0.92699 0.74525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.62 101.05 0.97 -0.62 15 2 S -0.02 -0.33 22.89 -107.50 -2.46 -2.79 15 3 C 0.29 5.52 7.85 -90.87 -0.71 4.81 15 4 N -0.51 -10.14 10.33 -9.73 -0.10 -10.24 15 5 C 0.18 3.72 6.82 -82.33 -0.56 3.16 15 6 C -0.10 -1.70 9.83 36.01 0.35 -1.34 15 7 C -0.15 -3.25 5.12 -104.18 -0.53 -3.78 15 8 C 0.06 1.56 4.55 -29.04 -0.13 1.42 15 9 C -0.51 -13.73 9.09 -34.44 -0.31 -14.05 15 10 H 0.05 1.49 7.74 -52.48 -0.41 1.08 15 11 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 12 N -0.89 -25.15 13.29 55.43 0.74 -24.41 15 13 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 15 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 17 C 0.36 7.36 7.80 -16.72 -0.13 7.23 15 18 O -0.46 -8.81 12.74 -18.23 -0.23 -9.04 15 19 N -0.55 -10.76 9.16 -13.50 -0.12 -10.89 15 20 H 0.09 1.02 8.11 -51.92 -0.42 0.60 15 21 H 0.10 0.84 8.14 -51.92 -0.42 0.42 15 22 H 0.09 1.11 8.11 -51.92 -0.42 0.69 15 23 H 0.09 1.49 8.14 -51.93 -0.42 1.07 15 24 H 0.07 1.05 8.14 -51.93 -0.42 0.62 15 25 H 0.09 1.62 6.06 -51.93 -0.31 1.31 15 26 H 0.04 0.97 6.07 -51.93 -0.31 0.65 15 27 H 0.03 0.86 7.62 -51.93 -0.40 0.46 15 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 29 H 0.40 5.37 9.06 45.56 0.41 5.78 15 LS Contribution 270.92 15.07 4.08 4.08 Total: -1.00 -31.15 270.92 -6.54 -37.69 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -2.26 Total: 0.94 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -1.16 Total: -1.55 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.51 Total: -45.54 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.23 Total: -9.04 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -2.46 Total: -2.79 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.15 -6.54 -37.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260770897.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.129 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds