Wall clock time and date at job start Mon Mar 30 2020 03:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76202 * 99.99981 * 2 1 4 4 N 1.32551 * 119.19698 * 179.97438 * 3 2 1 5 5 C 1.32419 * 120.88125 * 179.97438 * 4 3 2 6 6 C 1.50702 * 120.36160 * 179.97438 * 5 4 3 7 7 C 1.38256 * 119.27318 * 0.02562 * 5 4 3 8 8 C 1.50701 * 120.74016 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47107 * 269.97658 * 8 7 5 10 10 H 1.08004 * 119.99832 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00397 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99739 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00414 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47099 * 89.99791 * 13 11 9 15 15 H 1.48500 * 109.47181 * 209.99813 * 13 11 9 16 16 H 1.48499 * 109.47169 * 330.00065 * 13 11 9 17 17 C 1.39408 * 118.52015 * 359.97438 * 7 5 4 18 18 O 1.35512 * 120.46311 * 180.02562 * 17 7 5 19 19 N 1.32530 * 119.18969 * 0.26932 * 3 2 1 20 20 H 1.08999 * 109.46822 * 60.00796 * 1 2 3 21 21 H 1.09001 * 109.46917 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47067 * 300.00154 * 1 2 3 23 23 H 1.08999 * 109.46919 * 270.02821 * 6 5 4 24 24 H 1.09001 * 109.46797 * 30.02206 * 6 5 4 25 25 H 1.08994 * 109.46792 * 150.02285 * 6 5 4 26 26 H 1.08997 * 109.47041 * 29.97123 * 8 7 5 27 27 H 1.08995 * 109.46911 * 149.97377 * 8 7 5 28 28 H 0.97002 * 119.99958 * 180.02562 * 12 11 9 29 29 H 0.96700 * 114.00230 * 90.00118 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 3.3678 2.1711 0.0005 5 6 3.6360 3.4679 0.0000 6 6 5.0636 3.9505 0.0012 7 6 2.5919 4.3741 -0.0005 8 6 2.8592 5.8572 -0.0016 9 6 2.9479 6.3528 1.4188 10 1 2.8228 5.6628 2.2402 11 6 3.1877 7.6871 1.6698 12 7 3.3396 8.5274 0.6695 13 14 3.2970 8.3014 3.4305 14 1 4.7040 8.2163 3.8980 15 1 2.8397 9.7129 3.4915 16 1 2.4344 7.4634 4.3016 17 6 1.2863 3.8854 -0.0010 18 8 0.2333 4.7385 -0.0021 19 7 1.0888 2.5727 0.0054 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 5.4069 4.0669 1.0292 24 1 5.6932 3.2235 -0.5119 25 1 5.1232 4.9098 -0.5128 26 1 3.7996 6.0565 -0.5153 27 1 2.0479 6.3722 -0.5161 28 1 3.5087 9.4661 0.8461 29 1 -0.0718 4.9856 -0.8858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260770897.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:07 Heat of formation + Delta-G solvation = -29.386457 kcal Electronic energy + Delta-G solvation = -14872.502363 eV Core-core repulsion = 12307.093494 eV Total energy + Delta-G solvation = -2565.408869 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.13769 -38.62561 -36.26858 -34.77229 -33.33431 -30.31473 -29.95993 -28.66958 -26.10367 -23.86965 -23.24321 -20.07840 -19.05300 -18.59504 -18.12419 -16.78302 -16.61503 -15.86136 -15.29423 -15.02566 -14.61221 -14.52327 -14.23893 -13.84819 -13.62247 -13.43227 -13.35076 -12.96702 -12.82617 -12.44970 -12.35207 -11.80370 -11.72343 -11.35167 -11.16509 -10.64728 -10.49581 -10.34140 -8.73637 -8.20236 -6.31862 -0.23340 -0.10860 0.19183 1.17690 1.38743 1.40235 1.50340 2.34922 2.43554 2.59173 3.10936 3.26082 3.65590 4.00418 4.23017 4.32981 4.36989 4.43200 4.71517 4.80982 4.94851 4.98854 5.19259 5.44096 5.53701 5.69738 5.85672 6.13023 6.54340 6.75111 6.78455 7.35201 8.87449 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.035033 B = 0.006647 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.050874 B = 4211.311285 C = 4462.185293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S 0.002 5.998 3 C 0.279 3.721 4 N -0.521 5.521 5 C 0.185 3.815 6 C -0.094 4.094 7 C -0.183 4.183 8 C 0.079 3.921 9 C -0.520 4.520 10 H 0.038 0.962 11 C 0.018 3.982 12 N -0.920 5.920 13 Si 0.954 3.046 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.278 1.278 17 C 0.357 3.643 18 O -0.473 6.473 19 N -0.553 5.553 20 H 0.087 0.913 21 H 0.140 0.860 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.032 0.968 27 H 0.017 0.983 28 H 0.267 0.733 29 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 -12.906 -3.418 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.234 5.766 3 C -0.096 4.096 4 N -0.240 5.240 5 C 0.038 3.962 6 C -0.151 4.151 7 C -0.191 4.191 8 C 0.041 3.959 9 C -0.558 4.558 10 H 0.056 0.944 11 C -0.181 4.181 12 N -0.559 5.559 13 Si 0.779 3.221 14 H -0.194 1.194 15 H -0.203 1.203 16 H -0.203 1.203 17 C 0.168 3.832 18 O -0.282 6.282 19 N -0.283 5.283 20 H 0.106 0.894 21 H 0.158 0.842 22 H 0.099 0.901 23 H 0.106 0.894 24 H 0.115 0.885 25 H 0.104 0.896 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -2.534 -14.637 -2.868 15.129 hybrid contribution -0.945 2.826 0.410 3.008 sum -3.480 -11.811 -2.457 12.556 Atomic orbital electron populations 1.23607 0.91961 1.08003 1.06698 1.85439 1.09206 0.90920 1.91044 1.25195 0.86280 1.01397 0.96771 1.68339 1.21240 1.16662 1.17755 1.21911 0.98205 0.87006 0.89080 1.20778 0.87922 1.02206 1.04240 1.22192 0.93400 1.01189 1.02321 1.17888 0.97203 0.84105 0.96707 1.21078 1.49405 0.93473 0.91841 0.94381 1.25653 0.94699 0.96792 1.00963 1.70016 1.49386 1.04131 1.32404 0.85614 0.78723 0.77557 0.80167 1.19355 1.20335 1.20263 1.19330 0.86563 0.85895 0.91378 1.84717 1.47357 1.60989 1.35141 1.68194 1.36063 1.03872 1.20168 0.89379 0.84236 0.90133 0.89443 0.88532 0.89610 0.94967 0.96519 0.92428 0.71983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.62 113.37 1.09 -1.59 15 2 S 0.00 0.06 22.89 -56.49 -1.29 -1.23 15 3 C 0.28 10.25 7.85 180.43 1.42 11.67 15 4 N -0.52 -20.29 10.33 -184.70 -1.91 -22.19 15 5 C 0.18 7.43 6.82 42.48 0.29 7.72 15 6 C -0.09 -3.22 9.83 71.24 0.70 -2.52 15 7 C -0.18 -8.01 5.12 -19.58 -0.10 -8.11 15 8 C 0.08 3.91 4.55 29.10 0.13 4.04 15 9 C -0.52 -28.60 9.09 25.60 0.23 -28.36 15 10 H 0.04 2.16 7.74 -2.91 -0.02 2.14 15 11 C 0.02 1.00 5.46 84.65 0.46 1.46 15 12 N -0.92 -52.24 13.29 21.45 0.28 -51.95 15 13 Si 0.95 43.49 29.54 68.60 2.03 45.51 15 14 H -0.27 -11.71 7.11 99.48 0.71 -11.01 15 15 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 17 C 0.36 14.75 7.80 84.84 0.66 15.42 15 18 O -0.47 -18.11 12.74 -88.14 -1.12 -19.23 15 19 N -0.55 -21.12 9.16 -309.33 -2.83 -23.95 15 20 H 0.09 1.82 8.11 -2.40 -0.02 1.80 15 21 H 0.14 1.74 8.14 -2.39 -0.02 1.72 15 22 H 0.08 1.82 8.11 -2.40 -0.02 1.80 15 23 H 0.09 2.97 8.14 -2.39 -0.02 2.96 15 24 H 0.10 2.74 8.14 -2.39 -0.02 2.72 15 25 H 0.09 3.03 6.06 -2.39 -0.01 3.02 15 26 H 0.03 1.62 6.07 -2.39 -0.01 1.60 15 27 H 0.02 0.86 7.62 -2.39 -0.02 0.84 15 28 H 0.27 14.29 8.31 -92.71 -0.77 13.52 15 29 H 0.42 11.28 9.06 -74.06 -0.67 10.61 15 Total: -1.00 -65.76 270.92 0.55 -65.21 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.51 Total: 8.12 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 4.89 Total: -0.29 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -4.46 Total: -98.10 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -1.12 Total: -19.23 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -1.29 Total: -1.23 kcal Total: -65.76 0.55 -65.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260770897.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.827 kcal (2) G-P(sol) polarization free energy of solvation -65.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds