Wall clock time and date at job start Mon Mar 30 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86796 * 120.00052 * 2 1 4 4 H 1.48494 * 109.47322 * 269.99795 * 3 2 1 5 5 H 1.48497 * 109.47245 * 30.00555 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00122 * 3 2 1 7 7 C 1.38985 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99606 * 179.97438 * 7 2 1 9 9 N 1.37332 * 120.00049 * 359.97438 * 7 2 1 10 10 C 1.36564 * 126.09266 * 180.02562 * 9 7 2 11 11 C 1.35509 * 107.52493 * 179.97438 * 10 9 7 12 12 O 1.36180 * 126.05113 * 179.97438 * 11 10 9 13 13 C 1.42904 * 116.99911 * 179.97438 * 12 11 10 14 14 H 1.08991 * 110.35619 * 299.13143 * 13 12 11 15 15 C 1.54267 * 110.39830 * 176.68057 * 13 12 11 16 16 C 1.53859 * 108.92471 * 213.25179 * 15 13 12 17 17 C 1.55143 * 106.89806 * 47.26142 * 16 15 13 18 18 S 1.83095 * 110.40041 * 61.45355 * 13 12 11 19 19 C 1.40507 * 107.89441 * 0.02562 * 11 10 9 20 20 N 1.30947 * 108.41030 * 0.26523 * 19 11 10 21 21 H 0.97009 * 119.99938 * 359.97438 * 1 2 3 22 22 H 1.07996 * 126.24082 * 359.97438 * 10 9 7 23 23 H 1.08999 * 109.61429 * 333.17165 * 15 13 12 24 24 H 1.09000 * 109.61006 * 93.33532 * 15 13 12 25 25 H 1.08998 * 109.97745 * 287.89896 * 16 15 13 26 26 H 1.09001 * 109.97567 * 166.61911 * 16 15 13 27 27 H 1.08994 * 110.85605 * 199.70724 * 17 16 15 28 28 H 1.09000 * 111.03326 * 76.13595 * 17 16 15 29 29 H 1.08002 * 125.79033 * 179.97438 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4945 2.0464 -1.4000 5 1 1.4445 2.6526 0.7001 6 1 3.5445 1.4401 0.7000 7 6 2.0078 -1.2037 -0.0005 8 1 3.0879 -1.2037 -0.0010 9 7 1.3211 -2.3930 -0.0005 10 6 1.8745 -3.6415 -0.0005 11 6 0.8585 -4.5381 0.0000 12 8 0.9861 -5.8939 -0.0003 13 6 -0.2208 -6.6592 0.0010 14 1 -0.8063 -6.4422 0.8943 15 6 0.0980 -8.1662 -0.0832 16 6 -1.0147 -8.8678 -0.8812 17 6 -1.2555 -8.0215 -2.1590 18 16 -1.2006 -6.3082 -1.5053 19 6 -0.3500 -3.8213 -0.0002 20 7 -0.0718 -2.5417 -0.0066 21 1 -0.4850 0.8401 0.0004 22 1 2.9295 -3.8722 -0.0009 23 1 1.0547 -8.3103 -0.5853 24 1 0.1482 -8.5862 0.9214 25 1 -1.9274 -8.9128 -0.2870 26 1 -0.6984 -9.8742 -1.1554 27 1 -2.2316 -8.2407 -2.5915 28 1 -0.4636 -8.1833 -2.8904 29 1 -1.3402 -4.2525 -0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260807160.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:30 Heat of formation + Delta-G solvation = 46.394703 kcal Electronic energy + Delta-G solvation = -14751.543760 eV Core-core repulsion = 12189.421010 eV Total energy + Delta-G solvation = -2562.122751 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.61323 -37.48490 -35.18812 -33.31903 -30.24505 -29.07977 -27.37822 -24.88651 -24.26042 -21.38345 -20.10175 -19.74185 -18.02249 -16.73039 -16.01467 -15.52826 -15.17543 -14.35227 -14.14560 -13.86638 -13.31229 -13.13482 -12.95339 -12.70423 -11.82849 -11.57466 -11.51787 -11.23113 -11.16622 -10.92463 -10.73544 -10.56311 -10.49944 -9.63060 -9.17078 -8.76659 -8.08673 -7.47059 -6.74317 -6.52502 -4.20124 1.98426 2.56711 3.00022 3.07967 3.12973 3.62383 3.71707 3.96407 4.26920 4.58680 4.75094 4.83862 4.91587 5.04972 5.14359 5.31679 5.53956 5.59786 5.68514 5.78757 6.00925 6.20840 6.61958 6.81485 6.99141 7.29898 7.54914 7.97928 8.45949 8.74340 9.39764 9.64095 10.44076 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.066612 B = 0.005513 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.244039 B = 5077.636467 C = 5306.034105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.045 3.955 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.320 4.320 8 H 0.118 0.882 9 N -0.141 5.141 10 C -0.071 4.071 11 C -0.079 4.079 12 O -0.285 6.285 13 C 0.153 3.847 14 H 0.092 0.908 15 C -0.126 4.126 16 C -0.121 4.121 17 C -0.087 4.087 18 S -0.296 6.296 19 C -0.088 4.088 20 N -0.244 5.244 21 H 0.274 0.726 22 H 0.151 0.849 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 -12.580 -0.682 12.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.453 4.453 8 H 0.135 0.865 9 N 0.087 4.913 10 C -0.218 4.218 11 C -0.134 4.134 12 O -0.199 6.199 13 C -0.014 4.014 14 H 0.109 0.891 15 C -0.165 4.165 16 C -0.160 4.160 17 C -0.235 4.235 18 S -0.071 6.071 19 C -0.262 4.262 20 N -0.078 5.078 21 H 0.085 0.915 22 H 0.168 0.832 23 H 0.105 0.895 24 H 0.107 0.893 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.117 0.883 28 H 0.106 0.894 29 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.461 -10.380 -1.102 10.540 hybrid contribution 0.928 -1.125 0.363 1.503 sum -0.533 -11.505 -0.740 11.541 Atomic orbital electron populations 1.70216 1.06118 1.27905 1.35838 1.25630 0.95720 1.00218 0.95548 0.85814 0.79384 0.79906 0.78971 1.19588 1.20132 1.18785 1.19883 0.91708 0.80346 1.53339 0.86488 1.44507 1.03632 1.03251 1.39877 1.20885 0.96938 0.84387 1.19603 1.18112 0.93833 0.81031 1.20473 1.85849 1.27917 1.15302 1.90793 1.24711 0.88174 0.92969 0.95572 0.89086 1.22366 1.00728 0.91103 1.02324 1.22516 0.99140 0.99384 0.94955 1.24243 1.05188 0.94280 0.99780 1.88453 1.71413 1.14313 1.32953 1.23533 0.96630 0.92672 1.13396 1.78152 0.90594 1.14178 1.24853 0.91533 0.83177 0.89497 0.89343 0.90257 0.89782 0.88326 0.89414 0.83086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.88 11.82 55.49 0.66 -21.23 15 2 C 0.05 1.19 5.50 -17.50 -0.10 1.10 15 3 Si 0.94 19.28 29.55 -169.99 -5.02 14.25 15 4 H -0.27 -5.50 7.11 56.52 0.40 -5.09 15 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 15 7 C -0.32 -8.72 10.25 -14.81 -0.15 -8.87 15 8 H 0.12 2.85 7.83 -52.48 -0.41 2.44 15 9 N -0.14 -4.02 3.74 -11.43 -0.04 -4.06 15 10 C -0.07 -1.81 11.49 -16.42 -0.19 -2.00 15 11 C -0.08 -1.94 6.64 -39.70 -0.26 -2.20 15 12 O -0.29 -6.06 10.10 -20.31 -0.21 -6.26 15 13 C 0.15 2.59 3.39 37.82 0.13 2.72 15 14 H 0.09 1.51 8.13 -51.93 -0.42 1.09 15 15 C -0.13 -1.53 6.13 -25.62 -0.16 -1.68 15 16 C -0.12 -1.19 6.46 -25.15 -0.16 -1.35 15 17 C -0.09 -1.03 7.38 38.29 0.28 -0.75 15 18 S -0.30 -5.20 20.26 -107.50 -2.18 -7.38 15 19 C -0.09 -2.29 10.22 -17.07 -0.17 -2.47 15 20 N -0.24 -7.19 10.40 30.78 0.32 -6.87 15 21 H 0.27 7.08 8.31 -40.82 -0.34 6.74 15 22 H 0.15 3.36 8.06 -52.49 -0.42 2.94 15 23 H 0.09 1.08 8.08 -51.93 -0.42 0.66 15 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.08 0.72 8.14 -51.93 -0.42 0.29 15 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 15 27 H 0.10 1.01 8.14 -51.93 -0.42 0.58 15 28 H 0.09 1.01 8.14 -51.93 -0.42 0.58 15 29 H 0.15 3.65 6.57 -52.49 -0.35 3.31 15 LS Contribution 262.34 15.07 3.95 3.95 Total: -1.00 -32.33 262.34 -6.57 -38.90 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -3.27 Total: 4.20 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -0.78 Total: -15.50 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.93 Total: -32.16 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.21 Total: -6.26 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.25 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -2.18 Total: -7.38 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.33 -6.57 -38.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260807160.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.296 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds