Wall clock time and date at job start Mon Mar 30 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86796 * 120.00052 * 2 1 4 4 H 1.48494 * 109.47322 * 269.99795 * 3 2 1 5 5 H 1.48497 * 109.47245 * 30.00555 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00122 * 3 2 1 7 7 C 1.38985 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99606 * 179.97438 * 7 2 1 9 9 N 1.37332 * 120.00049 * 359.97438 * 7 2 1 10 10 C 1.36564 * 126.09266 * 180.02562 * 9 7 2 11 11 C 1.35509 * 107.52493 * 179.97438 * 10 9 7 12 12 O 1.36180 * 126.05113 * 179.97438 * 11 10 9 13 13 C 1.42904 * 116.99911 * 179.97438 * 12 11 10 14 14 H 1.08991 * 110.35619 * 299.13143 * 13 12 11 15 15 C 1.54267 * 110.39830 * 176.68057 * 13 12 11 16 16 C 1.53859 * 108.92471 * 213.25179 * 15 13 12 17 17 C 1.55143 * 106.89806 * 47.26142 * 16 15 13 18 18 S 1.83095 * 110.40041 * 61.45355 * 13 12 11 19 19 C 1.40507 * 107.89441 * 0.02562 * 11 10 9 20 20 N 1.30947 * 108.41030 * 0.26523 * 19 11 10 21 21 H 0.97009 * 119.99938 * 359.97438 * 1 2 3 22 22 H 1.07996 * 126.24082 * 359.97438 * 10 9 7 23 23 H 1.08999 * 109.61429 * 333.17165 * 15 13 12 24 24 H 1.09000 * 109.61006 * 93.33532 * 15 13 12 25 25 H 1.08998 * 109.97745 * 287.89896 * 16 15 13 26 26 H 1.09001 * 109.97567 * 166.61911 * 16 15 13 27 27 H 1.08994 * 110.85605 * 199.70724 * 17 16 15 28 28 H 1.09000 * 111.03326 * 76.13595 * 17 16 15 29 29 H 1.08002 * 125.79033 * 179.97438 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4945 2.0464 -1.4000 5 1 1.4445 2.6526 0.7001 6 1 3.5445 1.4401 0.7000 7 6 2.0078 -1.2037 -0.0005 8 1 3.0879 -1.2037 -0.0010 9 7 1.3211 -2.3930 -0.0005 10 6 1.8745 -3.6415 -0.0005 11 6 0.8585 -4.5381 0.0000 12 8 0.9861 -5.8939 -0.0003 13 6 -0.2208 -6.6592 0.0010 14 1 -0.8063 -6.4422 0.8943 15 6 0.0980 -8.1662 -0.0832 16 6 -1.0147 -8.8678 -0.8812 17 6 -1.2555 -8.0215 -2.1590 18 16 -1.2006 -6.3082 -1.5053 19 6 -0.3500 -3.8213 -0.0002 20 7 -0.0718 -2.5417 -0.0066 21 1 -0.4850 0.8401 0.0004 22 1 2.9295 -3.8722 -0.0009 23 1 1.0547 -8.3103 -0.5853 24 1 0.1482 -8.5862 0.9214 25 1 -1.9274 -8.9128 -0.2870 26 1 -0.6984 -9.8742 -1.1554 27 1 -2.2316 -8.2407 -2.5915 28 1 -0.4636 -8.1833 -2.8904 29 1 -1.3402 -4.2525 -0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260807160.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:30 Heat of formation + Delta-G solvation = 25.307429 kcal Electronic energy + Delta-G solvation = -14752.458173 eV Core-core repulsion = 12189.421010 eV Total energy + Delta-G solvation = -2563.037164 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.58111 -39.07293 -36.30668 -35.26576 -32.29860 -30.53708 -29.00063 -26.86909 -25.45167 -22.92553 -21.62980 -21.52633 -19.88603 -18.09903 -17.78781 -17.29599 -16.59999 -15.73456 -15.62885 -15.57751 -15.05967 -14.69362 -14.41462 -13.93514 -13.55647 -12.96175 -12.89597 -12.79564 -12.70642 -12.43668 -12.08782 -12.00409 -11.79892 -11.27272 -10.83216 -10.68714 -10.14988 -8.86922 -8.69311 -8.48865 -6.26647 0.73252 1.24978 1.39379 1.45043 1.57878 1.75521 2.05419 2.26792 2.39088 2.87576 3.06111 3.58612 3.82828 3.94713 4.01346 4.24674 4.35620 4.61388 4.68144 4.70861 4.85695 4.90440 4.93543 5.03893 5.17165 5.33607 5.63220 5.99468 6.55887 6.81722 7.40101 7.58958 8.50959 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.066612 B = 0.005513 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.244039 B = 5077.636467 C = 5306.034105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C -0.006 4.006 3 Si 1.021 2.979 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.245 1.245 7 C -0.354 4.354 8 H 0.139 0.861 9 N -0.162 5.162 10 C -0.086 4.086 11 C -0.066 4.066 12 O -0.292 6.292 13 C 0.151 3.849 14 H 0.089 0.911 15 C -0.120 4.120 16 C -0.110 4.110 17 C -0.063 4.063 18 S -0.390 6.390 19 C -0.093 4.093 20 N -0.294 5.294 21 H 0.278 0.722 22 H 0.178 0.822 23 H 0.085 0.915 24 H 0.115 0.885 25 H 0.090 0.910 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.094 0.906 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.493 -14.252 -0.740 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.217 4.217 3 Si 0.840 3.160 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.168 1.168 7 C -0.485 4.485 8 H 0.156 0.844 9 N 0.065 4.935 10 C -0.233 4.233 11 C -0.122 4.122 12 O -0.206 6.206 13 C -0.016 4.016 14 H 0.107 0.893 15 C -0.159 4.159 16 C -0.149 4.149 17 C -0.211 4.211 18 S -0.166 6.166 19 C -0.267 4.267 20 N -0.129 5.129 21 H 0.088 0.912 22 H 0.195 0.805 23 H 0.104 0.896 24 H 0.133 0.867 25 H 0.109 0.891 26 H 0.141 0.859 27 H 0.137 0.863 28 H 0.113 0.887 29 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.455 -12.095 -1.160 12.159 hybrid contribution 0.554 -0.828 0.335 1.051 sum 0.099 -12.923 -0.826 12.949 Atomic orbital electron populations 1.70384 1.08356 1.29216 1.37203 1.26886 0.96557 1.04208 0.94057 0.84564 0.78282 0.73889 0.79286 1.18877 1.19840 1.16827 1.20632 0.92976 0.80764 1.54121 0.84407 1.44791 1.03439 1.04408 1.40837 1.21484 0.98518 0.84009 1.19279 1.18152 0.92850 0.82669 1.18494 1.85842 1.30546 1.13470 1.90714 1.25123 0.86600 0.95259 0.94599 0.89323 1.22478 1.01556 0.87387 1.04432 1.22553 0.98827 1.00173 0.93303 1.24419 1.06674 0.89104 1.00878 1.88727 1.71891 1.21302 1.34687 1.23729 0.97736 0.92195 1.13014 1.78045 0.91969 1.15969 1.26886 0.91249 0.80490 0.89614 0.86709 0.89140 0.85918 0.86266 0.88733 0.82204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.07 11.82 21.66 0.26 -47.81 15 2 C -0.01 -0.29 5.50 84.95 0.47 0.17 15 3 Si 1.02 39.42 29.55 68.60 2.03 41.45 15 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 5 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 6 H -0.25 -8.64 7.11 99.48 0.71 -7.93 15 7 C -0.35 -19.53 10.25 84.01 0.86 -18.67 15 8 H 0.14 6.69 7.83 -2.91 -0.02 6.67 15 9 N -0.16 -9.49 3.74 -190.08 -0.71 -10.20 15 10 C -0.09 -4.45 11.49 83.33 0.96 -3.50 15 11 C -0.07 -3.29 6.64 22.19 0.15 -3.14 15 12 O -0.29 -12.31 10.10 -95.60 -0.97 -13.28 15 13 C 0.15 4.97 3.39 72.41 0.25 5.22 15 14 H 0.09 2.92 8.13 -2.39 -0.02 2.90 15 15 C -0.12 -2.52 6.13 31.31 0.19 -2.33 15 16 C -0.11 -1.68 6.46 31.62 0.20 -1.48 15 17 C -0.06 -1.32 7.38 72.72 0.54 -0.79 15 18 S -0.39 -13.67 20.26 -56.49 -1.14 -14.81 15 19 C -0.09 -5.01 10.22 85.38 0.87 -4.14 15 20 N -0.29 -18.05 10.40 -56.54 -0.59 -18.64 15 21 H 0.28 14.81 8.31 -92.70 -0.77 14.04 15 22 H 0.18 7.87 8.06 -2.91 -0.02 7.85 15 23 H 0.09 1.86 8.08 -2.39 -0.02 1.84 15 24 H 0.11 1.86 8.14 -2.39 -0.02 1.84 15 25 H 0.09 1.24 8.14 -2.39 -0.02 1.23 15 26 H 0.12 1.09 8.14 -2.39 -0.02 1.07 15 27 H 0.12 2.04 8.14 -2.39 -0.02 2.02 15 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 15 29 H 0.16 8.09 6.57 -2.91 -0.02 8.08 15 Total: -1.00 -73.72 262.34 4.51 -69.22 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 1.15 Total: 22.73 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 4.48 Total: -28.65 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -1.04 Total: -76.65 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.97 Total: -13.28 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Atomic # 16 Polarization: -13.67 SS G_CDS: -1.14 Total: -14.81 kcal Total: -73.72 4.51 -69.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260807160.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.523 kcal (2) G-P(sol) polarization free energy of solvation -73.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds