Wall clock time and date at job start Mon Mar 30 2020 04:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38654 * 120.41103 * 2 1 4 4 C 1.38732 * 118.40849 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 120.43229 * 180.02562 * 4 3 2 6 6 C 1.38348 * 119.13741 * 359.97438 * 4 3 2 7 7 N 1.31851 * 120.74381 * 0.28177 * 6 4 3 8 8 C 1.31879 * 121.73643 * 359.42870 * 7 6 4 9 9 C 1.50702 * 119.60585 * 180.31376 * 8 7 6 10 10 H 1.08994 * 109.47341 * 187.55301 * 9 8 7 11 11 C 1.50702 * 109.46738 * 67.55532 * 9 8 7 12 12 H 1.07999 * 119.99872 * 305.04329 * 11 9 8 13 13 C 1.37870 * 119.99749 * 125.04858 * 11 9 8 14 14 N 1.31517 * 120.00749 * 5.76032 * 13 11 9 15 15 Si 1.86803 * 119.99982 * 185.76016 * 13 11 9 16 16 H 1.48500 * 109.46894 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47463 * 119.99946 * 15 13 11 18 18 H 1.48498 * 109.47254 * 239.99870 * 15 13 11 19 19 C 1.52999 * 109.47021 * 307.55710 * 9 8 7 20 20 N 1.46895 * 109.47203 * 184.75683 * 19 9 8 21 21 H 1.08997 * 109.47571 * 96.05500 * 1 2 3 22 22 H 1.09001 * 109.47061 * 216.06065 * 1 2 3 23 23 H 1.09010 * 109.46922 * 336.05858 * 1 2 3 24 24 H 1.08001 * 120.79604 * 0.04162 * 3 2 1 25 25 H 1.07997 * 119.63015 * 179.97438 * 6 4 3 26 26 H 0.96997 * 120.00635 * 180.02562 * 14 13 11 27 27 H 1.09004 * 109.47055 * 304.75258 * 19 9 8 28 28 H 1.08994 * 109.47186 * 64.75143 * 19 9 8 29 29 H 1.00898 * 111.00293 * 56.04446 * 20 19 9 30 30 H 1.00893 * 111.00414 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1958 0.0000 4 6 3.5953 1.1473 -0.0005 5 17 4.5264 2.6125 0.0001 6 6 4.2263 -0.0839 -0.0005 7 7 3.5253 -1.2006 -0.0056 8 6 2.2065 -1.1918 0.0004 9 6 1.4533 -2.4970 0.0014 10 1 0.3888 -2.3023 -0.1285 11 6 1.6780 -3.2056 1.3123 12 1 2.6832 -3.4086 1.6510 13 6 0.6003 -3.5948 2.0791 14 7 -0.6223 -3.4506 1.6165 15 14 0.8767 -4.3270 3.7753 16 1 2.3332 -4.3809 4.0598 17 1 0.2047 -3.4818 4.7948 18 1 0.3119 -5.6996 3.8200 19 6 1.9548 -3.3761 -1.1461 20 7 1.1445 -4.5994 -1.2160 21 1 -0.3634 -0.1084 -1.0219 22 1 -0.3633 -0.8308 0.6049 23 1 -0.3633 0.9393 0.4171 24 1 1.6887 2.1423 0.0007 25 1 5.3053 -0.1309 -0.0014 26 1 -1.3805 -3.7240 2.1562 27 1 1.8703 -2.8302 -2.0857 28 1 2.9977 -3.6405 -0.9721 29 1 0.1646 -4.3790 -1.3124 30 1 1.4559 -5.1970 -1.9668 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260847646.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:58 Heat of formation + Delta-G solvation = -1.360652 kcal Electronic energy + Delta-G solvation = -15055.872639 eV Core-core repulsion = 12489.635354 eV Total energy + Delta-G solvation = -2566.237285 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.072 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.29265 -37.70765 -36.72262 -34.54488 -34.00691 -32.79034 -29.69353 -27.97279 -26.14699 -24.43082 -22.91319 -21.53104 -18.63830 -17.85712 -17.33209 -16.65255 -16.43934 -15.63656 -15.44093 -14.98590 -14.46700 -14.13450 -13.88821 -13.74614 -13.59083 -13.24803 -12.97764 -12.82106 -12.54470 -12.51550 -12.32027 -11.97529 -11.37818 -10.94902 -10.52253 -10.46679 -10.18703 -9.43293 -9.12604 -8.02556 -6.02112 0.12922 0.32852 1.08941 1.41103 1.45509 1.54628 2.49791 2.82970 3.29645 3.62719 3.84359 3.88789 4.05080 4.19645 4.41118 4.63473 4.66795 4.74348 4.85879 4.98489 5.01721 5.20166 5.41839 5.42510 5.69403 5.80631 5.94226 6.35862 6.66512 6.95978 7.04961 7.19742 7.58579 9.05435 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.026499 B = 0.007517 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.385881 B = 3723.964365 C = 3966.961156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.140 4.140 3 C -0.067 4.067 4 C -0.108 4.108 5 Cl -0.054 7.054 6 C 0.095 3.905 7 N -0.492 5.492 8 C 0.151 3.849 9 C 0.067 3.933 10 H 0.082 0.918 11 C -0.485 4.485 12 H 0.030 0.970 13 C 0.039 3.961 14 N -0.902 5.902 15 Si 0.935 3.065 16 H -0.283 1.283 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.096 3.904 20 N -0.835 5.835 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.165 0.835 25 H 0.174 0.826 26 H 0.260 0.740 27 H -0.005 1.005 28 H 0.044 0.956 29 H 0.338 0.662 30 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.369 9.759 -5.123 11.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.142 4.142 3 C -0.093 4.093 4 C -0.137 4.137 5 Cl -0.025 7.025 6 C -0.064 4.064 7 N -0.201 5.201 8 C 0.014 3.986 9 C 0.048 3.952 10 H 0.100 0.900 11 C -0.523 4.523 12 H 0.048 0.952 13 C -0.161 4.161 14 N -0.541 5.541 15 Si 0.763 3.237 16 H -0.208 1.208 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.035 4.035 20 N -0.364 5.364 21 H 0.097 0.903 22 H 0.087 0.913 23 H 0.102 0.898 24 H 0.182 0.818 25 H 0.191 0.809 26 H 0.070 0.930 27 H 0.013 0.987 28 H 0.063 0.937 29 H 0.151 0.849 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.980 8.897 -4.343 10.670 hybrid contribution -0.325 0.645 0.120 0.732 sum 3.655 9.542 -4.223 11.056 Atomic orbital electron populations 1.20771 0.88867 1.03688 1.03015 1.20996 0.98900 0.92525 1.01799 1.21600 0.91909 0.99210 0.96620 1.21973 0.93133 0.88897 1.09675 1.98334 1.72785 1.34278 1.97126 1.23106 1.01315 0.86062 0.95892 1.67687 1.08993 1.30161 1.13225 1.22247 0.89393 0.97185 0.89808 1.18179 0.96282 0.86570 0.94218 0.90040 1.20776 0.91539 1.36000 1.03996 0.95178 1.25293 0.95298 0.95612 0.99930 1.69888 0.97893 1.48853 1.37417 0.85875 0.77512 0.78359 0.81947 1.20820 1.20723 1.20768 1.21588 0.96670 0.90501 0.94750 1.58320 1.07039 1.18602 1.52447 0.90325 0.91329 0.89827 0.81754 0.80870 0.93030 0.98735 0.93702 0.84923 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.57 9.13 71.24 0.65 -2.92 16 2 C -0.14 -5.17 5.90 -19.78 -0.12 -5.28 16 3 C -0.07 -2.07 9.64 22.49 0.22 -1.86 16 4 C -0.11 -3.28 6.34 22.41 0.14 -3.14 16 5 Cl -0.05 -1.31 28.99 -2.72 -0.08 -1.39 16 6 C 0.09 3.24 10.99 84.72 0.93 4.17 16 7 N -0.49 -20.76 9.86 -183.79 -1.81 -22.58 16 8 C 0.15 6.56 5.46 42.54 0.23 6.80 16 9 C 0.07 3.20 2.19 -12.29 -0.03 3.17 16 10 H 0.08 4.03 4.58 -2.39 -0.01 4.01 16 11 C -0.48 -26.38 7.99 25.60 0.20 -26.18 16 12 H 0.03 1.76 7.82 -2.91 -0.02 1.73 16 13 C 0.04 2.08 5.45 84.65 0.46 2.54 16 14 N -0.90 -48.18 12.64 21.45 0.27 -47.91 16 15 Si 0.94 44.23 29.54 68.60 2.03 46.26 16 16 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 19 C 0.10 4.24 5.94 86.30 0.51 4.75 16 20 N -0.83 -34.56 9.33 -186.73 -1.74 -36.30 16 21 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 22 H 0.07 2.84 6.61 -2.39 -0.02 2.82 16 23 H 0.08 2.27 8.06 -2.38 -0.02 2.25 16 24 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 25 H 0.17 4.91 8.06 -2.91 -0.02 4.89 16 26 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 27 H -0.01 -0.22 8.14 -2.38 -0.02 -0.24 16 28 H 0.04 2.09 8.04 -2.39 -0.02 2.07 16 29 H 0.34 13.94 8.99 -89.70 -0.81 13.13 16 30 H 0.33 11.43 9.08 -89.70 -0.81 10.61 16 Total: -1.00 -58.75 274.60 1.43 -57.32 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -0.44 Total: 22.55 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 3.21 Total: -17.95 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -3.28 Total: -106.78 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -58.75 1.43 -57.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260847646.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.958 kcal (2) G-P(sol) polarization free energy of solvation -58.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds