Wall clock time and date at job start Mon Mar 30 2020 04:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38650 * 120.41000 * 2 1 4 4 C 1.38734 * 118.40894 * 179.97438 * 3 2 1 5 5 Cl 1.73605 * 120.43437 * 180.02562 * 4 3 2 6 6 C 1.38353 * 119.13797 * 0.02562 * 4 3 2 7 7 N 1.31845 * 120.74012 * 359.97438 * 6 4 3 8 8 C 1.31881 * 121.74135 * 359.75271 * 7 6 4 9 9 C 1.50700 * 119.60681 * 180.28936 * 8 7 6 10 10 H 1.08996 * 109.47131 * 186.71544 * 9 8 7 11 11 C 1.50698 * 109.47103 * 306.72038 * 9 8 7 12 12 H 1.07999 * 119.99983 * 4.93289 * 11 9 8 13 13 C 1.37878 * 120.00108 * 184.94167 * 11 9 8 14 14 N 1.31508 * 120.00152 * 7.51115 * 13 11 9 15 15 Si 1.86799 * 119.99712 * 187.52116 * 13 11 9 16 16 H 1.48498 * 109.47648 * 94.98105 * 15 13 11 17 17 H 1.48500 * 109.46851 * 214.97646 * 15 13 11 18 18 H 1.48496 * 109.47357 * 334.97418 * 15 13 11 19 19 C 1.53006 * 109.47341 * 66.71722 * 9 8 7 20 20 N 1.46896 * 109.46990 * 64.65819 * 19 9 8 21 21 H 1.09006 * 109.47426 * 96.01110 * 1 2 3 22 22 H 1.09000 * 109.47224 * 336.01334 * 1 2 3 23 23 H 1.08998 * 109.47129 * 216.00613 * 1 2 3 24 24 H 1.08000 * 120.79713 * 359.97438 * 3 2 1 25 25 H 1.07998 * 119.63341 * 179.97438 * 6 4 3 26 26 H 0.96997 * 120.00390 * 180.02562 * 14 13 11 27 27 H 1.08995 * 109.47386 * 184.65718 * 19 9 8 28 28 H 1.08999 * 109.46822 * 304.65933 * 19 9 8 29 29 H 1.00905 * 111.00184 * 56.04710 * 20 19 9 30 30 H 1.00906 * 111.00068 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2088 1.1958 0.0000 4 6 3.5953 1.1473 0.0005 5 17 4.5264 2.6125 0.0012 6 6 4.2264 -0.0839 0.0005 7 7 3.5253 -1.2005 0.0005 8 6 2.2065 -1.1917 0.0053 9 6 1.4533 -2.4970 0.0117 10 1 0.3873 -2.3019 -0.1051 11 6 1.9338 -3.3598 -1.1266 12 1 2.7611 -3.0336 -1.7395 13 6 1.3173 -4.5655 -1.3857 14 7 0.2209 -4.8958 -0.7389 15 14 2.0395 -5.7300 -2.6553 16 1 2.9095 -6.7241 -1.9770 17 1 0.9402 -6.4351 -3.3621 18 1 2.8427 -4.9567 -3.6360 19 6 1.6971 -3.2201 1.3378 20 7 1.1288 -2.4300 2.4381 21 1 -0.3634 -0.1076 -1.0220 22 1 -0.3634 0.9389 0.4178 23 1 -0.3633 -0.8313 0.6041 24 1 1.6886 2.1422 -0.0004 25 1 5.3053 -0.1310 0.0005 26 1 -0.2127 -5.7442 -0.9209 27 1 1.2206 -4.2000 1.3104 28 1 2.7690 -3.3416 1.4937 29 1 0.1482 -2.2485 2.2841 30 1 1.2773 -2.8867 3.3256 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260847648.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:10 Heat of formation + Delta-G solvation = -4.848462 kcal Electronic energy + Delta-G solvation = -15070.424064 eV Core-core repulsion = 12504.035536 eV Total energy + Delta-G solvation = -2566.388528 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.072 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.27168 -37.71051 -36.80324 -34.51153 -34.12836 -32.69276 -29.85096 -27.98584 -25.98388 -24.50689 -22.98980 -21.53621 -18.69601 -17.83249 -17.28644 -16.75168 -16.43337 -15.74742 -15.37816 -15.02175 -14.47798 -14.07987 -13.90867 -13.73040 -13.58758 -13.29646 -13.04668 -12.85514 -12.57330 -12.53923 -12.13515 -11.93622 -11.52069 -11.22636 -10.50545 -10.42266 -10.14795 -9.42155 -9.32634 -8.16072 -6.21704 0.19358 0.39378 1.12183 1.39258 1.42236 1.51589 2.42338 2.90822 3.14953 3.64455 3.90495 3.93077 4.04304 4.13623 4.36362 4.67738 4.75440 4.86551 4.88308 5.01657 5.09555 5.25450 5.37445 5.43532 5.70567 5.81263 5.90460 6.20153 6.48728 6.72354 6.90490 7.27277 7.43711 8.91096 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.028577 B = 0.007361 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.583867 B = 3803.097022 C = 4223.491540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.134 4.134 3 C -0.068 4.068 4 C -0.106 4.106 5 Cl -0.055 7.055 6 C 0.091 3.909 7 N -0.491 5.491 8 C 0.172 3.828 9 C 0.091 3.909 10 H 0.045 0.955 11 C -0.516 4.516 12 H 0.043 0.957 13 C 0.023 3.977 14 N -0.911 5.911 15 Si 0.946 3.054 16 H -0.278 1.278 17 H -0.279 1.279 18 H -0.276 1.276 19 C 0.091 3.909 20 N -0.847 5.847 21 H 0.069 0.931 22 H 0.092 0.908 23 H 0.067 0.933 24 H 0.166 0.834 25 H 0.170 0.830 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.035 0.965 29 H 0.337 0.663 30 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.671 11.303 3.056 11.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.136 4.136 3 C -0.094 4.094 4 C -0.135 4.135 5 Cl -0.027 7.027 6 C -0.067 4.067 7 N -0.199 5.199 8 C 0.035 3.965 9 C 0.072 3.928 10 H 0.063 0.937 11 C -0.555 4.555 12 H 0.062 0.938 13 C -0.176 4.176 14 N -0.551 5.551 15 Si 0.773 3.227 16 H -0.204 1.204 17 H -0.205 1.205 18 H -0.201 1.201 19 C -0.041 4.041 20 N -0.376 5.376 21 H 0.087 0.913 22 H 0.111 0.889 23 H 0.086 0.914 24 H 0.184 0.816 25 H 0.187 0.813 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.149 0.851 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.591 11.044 2.837 11.693 hybrid contribution -0.431 -0.932 -0.516 1.149 sum 2.160 10.112 2.321 10.597 Atomic orbital electron populations 1.20737 0.88643 1.03731 1.02634 1.20960 0.98988 0.92315 1.01342 1.21580 0.91758 0.99287 0.96789 1.21982 0.93275 0.88697 1.09582 1.98331 1.72898 1.34324 1.97140 1.23044 1.01177 0.86144 0.96328 1.67619 1.09360 1.30129 1.12819 1.21666 0.89149 0.96259 0.89379 1.17804 0.94653 0.87463 0.92921 0.93743 1.21212 1.15908 1.04188 1.14182 0.93841 1.25544 0.94825 0.99208 0.98046 1.69993 1.18152 1.23276 1.43629 0.85720 0.78257 0.79264 0.79493 1.20370 1.20480 1.20057 1.21536 0.96880 0.95014 0.90642 1.58914 1.21320 1.52624 1.04714 0.91271 0.88915 0.91388 0.81614 0.81324 0.92789 0.95889 0.94634 0.85066 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.03 9.15 71.24 0.65 -2.38 16 2 C -0.13 -4.79 5.90 -19.78 -0.12 -4.90 16 3 C -0.07 -2.06 9.64 22.49 0.22 -1.85 16 4 C -0.11 -3.29 6.34 22.42 0.14 -3.15 16 5 Cl -0.06 -1.38 28.99 -2.72 -0.08 -1.45 16 6 C 0.09 3.25 10.99 84.72 0.93 4.18 16 7 N -0.49 -21.47 9.75 -183.79 -1.79 -23.26 16 8 C 0.17 7.50 5.15 42.54 0.22 7.72 16 9 C 0.09 4.41 1.76 -12.28 -0.02 4.39 16 10 H 0.04 2.23 5.70 -2.39 -0.01 2.22 16 11 C -0.52 -28.37 8.30 25.60 0.21 -28.16 16 12 H 0.04 2.50 7.60 -2.91 -0.02 2.48 16 13 C 0.02 1.26 5.19 84.66 0.44 1.70 16 14 N -0.91 -50.20 12.03 21.45 0.26 -49.94 16 15 Si 0.95 43.69 29.54 68.60 2.03 45.71 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 19 C 0.09 4.21 6.03 86.31 0.52 4.73 16 20 N -0.85 -31.47 9.33 -186.72 -1.74 -33.21 16 21 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 22 H 0.09 2.10 8.06 -2.39 -0.02 2.08 16 23 H 0.07 2.22 6.03 -2.39 -0.01 2.21 16 24 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 25 H 0.17 5.08 8.06 -2.91 -0.02 5.06 16 26 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 27 H 0.02 1.18 6.68 -2.39 -0.02 1.16 16 28 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 29 H 0.34 11.77 8.45 -89.69 -0.76 11.01 16 30 H 0.34 10.91 9.08 -89.69 -0.81 10.10 16 Total: -1.00 -60.08 271.66 1.47 -58.61 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.39 Total: 21.26 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 3.20 Total: -17.72 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -3.28 Total: -106.41 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.45 kcal Total: -60.08 1.47 -58.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260847648.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.762 kcal (2) G-P(sol) polarization free energy of solvation -60.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds