Wall clock time and date at job start Mon Mar 30 2020 04:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38237 * 120.41312 * 2 1 4 4 N 1.31849 * 120.79142 * 180.27587 * 3 2 1 5 5 C 1.31873 * 121.74288 * 0.02562 * 4 3 2 6 6 C 1.38302 * 120.74394 * 0.02562 * 5 4 3 7 7 Cl 1.73604 * 120.43138 * 179.97438 * 6 5 4 8 8 C 1.38607 * 120.41267 * 180.28400 * 2 1 3 9 9 C 1.50701 * 120.79508 * 359.74586 * 8 2 1 10 10 H 1.08998 * 109.47117 * 0.02562 * 9 8 2 11 11 C 1.50699 * 109.47010 * 240.00048 * 9 8 2 12 12 H 1.08001 * 120.00120 * 354.57866 * 11 9 8 13 13 C 1.37877 * 120.00024 * 174.57652 * 11 9 8 14 14 N 1.31521 * 120.00066 * 350.51464 * 13 11 9 15 15 Si 1.86802 * 120.00313 * 170.51483 * 13 11 9 16 16 H 1.48501 * 109.47052 * 90.00116 * 15 13 11 17 17 H 1.48493 * 109.47201 * 210.00263 * 15 13 11 18 18 H 1.48500 * 109.47010 * 330.00287 * 15 13 11 19 19 C 1.53002 * 109.47234 * 120.00038 * 9 8 2 20 20 N 1.46897 * 109.47042 * 297.23116 * 19 9 8 21 21 H 1.08999 * 109.46964 * 269.71885 * 1 2 3 22 22 H 1.09002 * 109.47231 * 29.71869 * 1 2 3 23 23 H 1.08996 * 109.47250 * 149.71786 * 1 2 3 24 24 H 1.08001 * 119.59770 * 0.25637 * 3 2 1 25 25 H 1.07998 * 119.63028 * 179.97438 * 5 4 3 26 26 H 0.97001 * 119.99891 * 179.97438 * 14 13 11 27 27 H 1.08997 * 109.47005 * 57.23509 * 19 9 8 28 28 H 1.09001 * 109.47000 * 177.23183 * 19 9 8 29 29 H 1.00900 * 110.99950 * 184.43823 * 20 19 9 30 30 H 1.00897 * 111.00391 * 308.39320 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1922 0.0000 4 7 3.5252 1.2009 -0.0055 5 6 4.2264 0.0840 -0.0116 6 6 3.5956 -1.1468 -0.0130 7 17 4.5267 -2.6120 -0.0218 8 6 2.2086 -1.1953 -0.0059 9 6 1.4828 -2.5160 -0.0067 10 1 0.4072 -2.3395 -0.0026 11 6 1.8682 -3.3017 1.2201 12 1 2.6330 -2.9261 1.8838 13 6 1.2443 -4.5001 1.4955 14 7 0.1908 -4.8681 0.7995 15 14 1.8954 -5.6009 2.8570 16 1 1.2340 -5.2470 4.1386 17 1 1.6074 -7.0197 2.5267 18 1 3.3624 -5.4111 2.9881 19 6 1.8645 -3.3070 -1.2596 20 7 1.4293 -2.5716 -2.4544 21 1 -0.3633 -0.0050 1.0276 22 1 -0.3634 0.8925 -0.5095 23 1 -0.3633 -0.8874 -0.5182 24 1 1.6670 2.1276 0.0042 25 1 5.3054 0.1309 -0.0164 26 1 -0.2479 -5.7114 0.9930 27 1 2.9458 -3.4411 -1.2892 28 1 1.3780 -4.2821 -1.2359 29 1 1.6048 -3.1062 -3.2920 30 1 0.4558 -2.3151 -2.3866 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260853006.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:04 Heat of formation + Delta-G solvation = 17.224062 kcal Electronic energy + Delta-G solvation = -15448.252366 eV Core-core repulsion = 12882.820975 eV Total energy + Delta-G solvation = -2565.431391 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.77846 -36.02759 -35.41527 -32.75283 -32.25471 -31.02918 -28.14285 -26.60656 -24.08398 -22.90270 -21.45566 -19.88921 -16.96143 -16.21718 -15.66489 -14.95671 -14.71865 -14.27213 -13.90119 -13.41737 -13.05061 -12.77733 -12.36374 -12.21288 -11.98111 -11.56534 -11.31124 -11.08653 -10.86845 -10.73995 -10.38429 -9.95125 -9.82974 -9.41607 -8.80993 -8.44247 -8.30330 -8.12893 -7.66431 -6.16267 -4.15677 1.59597 1.97300 2.91559 3.24145 3.31879 3.37746 4.28594 4.39972 4.94201 5.15637 5.33970 5.49077 5.58615 5.60649 5.72191 6.04598 6.12648 6.24825 6.51917 6.57277 6.69339 6.84348 6.96955 7.21125 7.34767 7.70179 7.81911 7.94436 8.22049 8.31058 8.41899 8.85025 9.46410 10.92617 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.023500 B = 0.010643 C = 0.009558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.180478 B = 2630.245717 C = 2928.907443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.133 4.133 3 C 0.086 3.914 4 N -0.492 5.492 5 C 0.088 3.912 6 C -0.074 4.074 7 Cl -0.049 7.049 8 C 0.034 3.966 9 C 0.076 3.924 10 H 0.054 0.946 11 C -0.502 4.502 12 H 0.061 0.939 13 C 0.068 3.932 14 N -0.889 5.889 15 Si 0.887 3.113 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.271 1.271 19 C 0.055 3.945 20 N -0.857 5.857 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.148 0.852 25 H 0.150 0.850 26 H 0.261 0.739 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.322 0.678 30 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.137 5.805 -3.035 6.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.135 4.135 3 C -0.071 4.071 4 N -0.201 5.201 5 C -0.069 4.069 6 C -0.103 4.103 7 Cl -0.020 7.020 8 C 0.026 3.974 9 C 0.057 3.943 10 H 0.072 0.928 11 C -0.540 4.540 12 H 0.080 0.920 13 C -0.134 4.134 14 N -0.527 5.527 15 Si 0.714 3.286 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.195 1.195 19 C -0.075 4.075 20 N -0.384 5.384 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.165 0.835 25 H 0.167 0.833 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.131 0.869 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.096 6.866 -2.819 8.042 hybrid contribution -0.704 -2.474 0.611 2.644 sum 2.392 4.392 -2.208 5.466 Atomic orbital electron populations 1.20692 0.90473 1.02566 1.02386 1.20741 0.97606 0.92842 1.02342 1.22486 0.89912 0.97254 0.97432 1.67648 1.08430 1.29657 1.14390 1.22484 0.99900 0.86412 0.98109 1.21839 0.93117 0.88398 1.06945 1.98319 1.71928 1.35378 1.96422 1.20658 0.91470 0.97591 0.87658 1.18052 0.96057 0.86112 0.94043 0.92824 1.20919 1.21146 1.04775 1.07182 0.92043 1.24872 0.94293 0.97882 0.96334 1.69942 1.18864 1.22666 1.41263 0.86657 0.79848 0.79947 0.82141 1.20637 1.21176 1.19538 1.22275 1.00593 0.96435 0.88172 1.59089 1.24725 1.49449 1.05159 0.91261 0.92234 0.90401 0.83467 0.83259 0.92882 0.91233 0.93628 0.86856 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.45 36.01 0.34 -1.32 16 2 C -0.13 -2.47 5.90 -104.49 -0.62 -3.08 16 3 C 0.09 1.47 10.86 -17.54 -0.19 1.28 16 4 N -0.49 -9.02 10.36 -13.22 -0.14 -9.16 16 5 C 0.09 1.61 10.99 -17.51 -0.19 1.42 16 6 C -0.07 -1.49 5.94 -39.36 -0.23 -1.73 16 7 Cl -0.05 -0.98 23.77 -51.86 -1.23 -2.21 16 8 C 0.03 0.72 4.43 -104.28 -0.46 0.26 16 9 C 0.08 1.75 1.65 -92.92 -0.15 1.60 16 10 H 0.05 1.31 5.58 -51.93 -0.29 1.02 16 11 C -0.50 -12.85 6.98 -34.44 -0.24 -13.09 16 12 H 0.06 1.61 7.08 -52.49 -0.37 1.24 16 13 C 0.07 1.78 5.18 -17.82 -0.09 1.69 16 14 N -0.89 -23.92 12.16 55.43 0.67 -23.25 16 15 Si 0.89 20.69 29.55 -169.99 -5.02 15.67 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C 0.06 1.22 5.87 -3.82 -0.02 1.20 16 20 N -0.86 -16.05 9.31 -10.37 -0.10 -16.15 16 21 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 23 H 0.08 1.34 6.21 -51.93 -0.32 1.01 16 24 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 25 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.07 1.55 5.02 -51.93 -0.26 1.29 16 28 H 0.05 1.13 6.84 -51.93 -0.36 0.77 16 29 H 0.32 5.34 9.08 -39.29 -0.36 4.99 16 30 H 0.33 5.89 8.94 -39.29 -0.35 5.54 16 LS Contribution 263.12 15.07 3.97 3.97 Total: -1.00 -27.49 263.12 -6.84 -34.33 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -3.13 Total: 8.57 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -1.86 Total: -11.77 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.44 Total: -48.56 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.23 Total: -2.21 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.49 -6.84 -34.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260853006.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.555 kcal (2) G-P(sol) polarization free energy of solvation -27.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds