Wall clock time and date at job start Mon Mar 30 2020 04:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38237 * 120.41312 * 2 1 4 4 N 1.31849 * 120.79142 * 180.27587 * 3 2 1 5 5 C 1.31873 * 121.74288 * 0.02562 * 4 3 2 6 6 C 1.38302 * 120.74394 * 0.02562 * 5 4 3 7 7 Cl 1.73604 * 120.43138 * 179.97438 * 6 5 4 8 8 C 1.38607 * 120.41267 * 180.28400 * 2 1 3 9 9 C 1.50701 * 120.79508 * 359.74586 * 8 2 1 10 10 H 1.08998 * 109.47117 * 0.02562 * 9 8 2 11 11 C 1.50699 * 109.47010 * 240.00048 * 9 8 2 12 12 H 1.08001 * 120.00120 * 354.57866 * 11 9 8 13 13 C 1.37877 * 120.00024 * 174.57652 * 11 9 8 14 14 N 1.31521 * 120.00066 * 350.51464 * 13 11 9 15 15 Si 1.86802 * 120.00313 * 170.51483 * 13 11 9 16 16 H 1.48501 * 109.47052 * 90.00116 * 15 13 11 17 17 H 1.48493 * 109.47201 * 210.00263 * 15 13 11 18 18 H 1.48500 * 109.47010 * 330.00287 * 15 13 11 19 19 C 1.53002 * 109.47234 * 120.00038 * 9 8 2 20 20 N 1.46897 * 109.47042 * 297.23116 * 19 9 8 21 21 H 1.08999 * 109.46964 * 269.71885 * 1 2 3 22 22 H 1.09002 * 109.47231 * 29.71869 * 1 2 3 23 23 H 1.08996 * 109.47250 * 149.71786 * 1 2 3 24 24 H 1.08001 * 119.59770 * 0.25637 * 3 2 1 25 25 H 1.07998 * 119.63028 * 179.97438 * 5 4 3 26 26 H 0.97001 * 119.99891 * 179.97438 * 14 13 11 27 27 H 1.08997 * 109.47005 * 57.23509 * 19 9 8 28 28 H 1.09001 * 109.47000 * 177.23183 * 19 9 8 29 29 H 1.00900 * 110.99950 * 184.43823 * 20 19 9 30 30 H 1.00897 * 111.00391 * 308.39320 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1922 0.0000 4 7 3.5252 1.2009 -0.0055 5 6 4.2264 0.0840 -0.0116 6 6 3.5956 -1.1468 -0.0130 7 17 4.5267 -2.6120 -0.0218 8 6 2.2086 -1.1953 -0.0059 9 6 1.4828 -2.5160 -0.0067 10 1 0.4072 -2.3395 -0.0026 11 6 1.8682 -3.3017 1.2201 12 1 2.6330 -2.9261 1.8838 13 6 1.2443 -4.5001 1.4955 14 7 0.1908 -4.8681 0.7995 15 14 1.8954 -5.6009 2.8570 16 1 1.2340 -5.2470 4.1386 17 1 1.6074 -7.0197 2.5267 18 1 3.3624 -5.4111 2.9881 19 6 1.8645 -3.3070 -1.2596 20 7 1.4293 -2.5716 -2.4544 21 1 -0.3633 -0.0050 1.0276 22 1 -0.3634 0.8925 -0.5095 23 1 -0.3633 -0.8874 -0.5182 24 1 1.6670 2.1276 0.0042 25 1 5.3054 0.1309 -0.0164 26 1 -0.2479 -5.7114 0.9930 27 1 2.9458 -3.4411 -1.2892 28 1 1.3780 -4.2821 -1.2359 29 1 1.6048 -3.1062 -3.2920 30 1 0.4558 -2.3151 -2.3866 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260853006.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:01 Heat of formation + Delta-G solvation = -0.701510 kcal Electronic energy + Delta-G solvation = -15449.029677 eV Core-core repulsion = 12882.820975 eV Total energy + Delta-G solvation = -2566.208702 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.072 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -41.23387 -37.61966 -37.02737 -34.33111 -34.02346 -32.53597 -29.83515 -27.99955 -25.95949 -24.46295 -22.90110 -21.55017 -18.77260 -17.77597 -17.21060 -16.58012 -16.39571 -15.94026 -15.38560 -15.07002 -14.53779 -14.24605 -14.00948 -13.71194 -13.47955 -13.26810 -12.91666 -12.70855 -12.61389 -12.43285 -11.98135 -11.76380 -11.56508 -11.20590 -10.47780 -10.22929 -9.84514 -9.58119 -9.31050 -8.15488 -6.18496 0.17439 0.46788 1.37131 1.39871 1.42024 1.50435 2.42147 2.89450 3.16828 3.63144 3.97523 3.98185 4.10153 4.16100 4.33837 4.70630 4.79009 4.88184 4.92403 5.05494 5.13681 5.28900 5.45358 5.49430 5.75940 5.82944 5.95364 6.19626 6.49411 6.72447 6.91395 7.00432 7.44960 8.92338 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.023500 B = 0.010643 C = 0.009558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.180478 B = 2630.245717 C = 2928.907443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.140 4.140 3 C 0.093 3.907 4 N -0.496 5.496 5 C 0.089 3.911 6 C -0.091 4.091 7 Cl -0.056 7.056 8 C 0.008 3.992 9 C 0.082 3.918 10 H 0.036 0.964 11 C -0.505 4.505 12 H 0.050 0.950 13 C 0.028 3.972 14 N -0.912 5.912 15 Si 0.933 3.067 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.068 3.932 20 N -0.847 5.847 21 H 0.069 0.931 22 H 0.095 0.905 23 H 0.060 0.940 24 H 0.187 0.813 25 H 0.174 0.826 26 H 0.260 0.740 27 H 0.066 0.934 28 H 0.013 0.987 29 H 0.335 0.665 30 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.354 7.323 -3.139 8.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.142 4.142 3 C -0.063 4.063 4 N -0.205 5.205 5 C -0.067 4.067 6 C -0.120 4.120 7 Cl -0.027 7.027 8 C 0.000 4.000 9 C 0.063 3.937 10 H 0.054 0.946 11 C -0.544 4.544 12 H 0.068 0.932 13 C -0.171 4.171 14 N -0.552 5.552 15 Si 0.759 3.241 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.063 4.063 20 N -0.376 5.376 21 H 0.087 0.913 22 H 0.114 0.886 23 H 0.079 0.921 24 H 0.204 0.796 25 H 0.191 0.809 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.032 0.968 29 H 0.147 0.853 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.318 8.388 -2.931 9.484 hybrid contribution -0.776 -2.860 0.618 3.027 sum 2.542 5.528 -2.313 6.509 Atomic orbital electron populations 1.20702 0.88901 1.03504 1.02634 1.21051 0.98888 0.92504 1.01774 1.23070 0.89650 0.98216 0.95411 1.67762 1.09054 1.29373 1.14351 1.22833 1.01108 0.85682 0.97112 1.22006 0.92996 0.88901 1.08056 1.98308 1.71960 1.35947 1.96525 1.20605 0.92058 0.97463 0.89854 1.17830 0.95199 0.87277 0.93372 0.94591 1.21113 1.20330 1.05065 1.07875 0.93157 1.25434 0.94595 0.98998 0.98121 1.70025 1.19722 1.22902 1.42501 0.85926 0.79219 0.78636 0.80272 1.20328 1.21011 1.19554 1.21985 0.99959 0.95021 0.89317 1.58984 1.25141 1.48842 1.04597 0.91252 0.88609 0.92142 0.79597 0.80915 0.93049 0.91566 0.96843 0.85315 0.85550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.00 9.45 71.24 0.67 -2.33 16 2 C -0.14 -4.91 5.90 -19.78 -0.12 -5.03 16 3 C 0.09 2.89 10.86 84.69 0.92 3.81 16 4 N -0.50 -16.75 10.36 -195.75 -2.03 -18.78 16 5 C 0.09 3.09 10.99 84.70 0.93 4.02 16 6 C -0.09 -3.56 5.94 22.42 0.13 -3.43 16 7 Cl -0.06 -2.21 23.77 -2.72 -0.06 -2.27 16 8 C 0.01 0.35 4.43 -19.65 -0.09 0.26 16 9 C 0.08 3.80 1.65 -12.29 -0.02 3.78 16 10 H 0.04 1.79 5.58 -2.39 -0.01 1.78 16 11 C -0.51 -26.10 6.98 25.60 0.18 -25.92 16 12 H 0.05 2.66 7.08 -2.91 -0.02 2.64 16 13 C 0.03 1.48 5.18 84.65 0.44 1.91 16 14 N -0.91 -49.79 12.16 21.45 0.26 -49.53 16 15 Si 0.93 42.60 29.55 68.60 2.03 44.63 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 C 0.07 3.02 5.87 86.30 0.51 3.53 16 20 N -0.85 -31.20 9.31 -186.72 -1.74 -32.94 16 21 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 22 H 0.10 2.12 8.09 -2.39 -0.02 2.11 16 23 H 0.06 2.02 6.21 -2.39 -0.01 2.01 16 24 H 0.19 4.23 8.06 -2.91 -0.02 4.21 16 25 H 0.17 4.99 8.06 -2.91 -0.02 4.97 16 26 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 27 H 0.07 2.98 5.02 -2.39 -0.01 2.97 16 28 H 0.01 0.67 6.84 -2.39 -0.02 0.66 16 29 H 0.34 10.84 9.08 -89.69 -0.81 10.02 16 30 H 0.33 11.79 8.94 -89.70 -0.80 10.99 16 Total: -1.00 -57.96 263.12 1.59 -56.37 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -0.43 Total: 21.92 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 3.56 Total: -19.40 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -3.51 Total: -101.25 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.06 Total: -2.27 kcal Total: -57.96 1.59 -56.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260853006.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.672 kcal (2) G-P(sol) polarization free energy of solvation -57.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds