Wall clock time and date at job start Mon Mar 30 2020 04:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38234 * 120.41479 * 2 1 4 4 N 1.31845 * 120.79497 * 179.73017 * 3 2 1 5 5 C 1.31878 * 121.74139 * 0.26785 * 4 3 2 6 6 C 1.38307 * 120.74125 * 359.97438 * 5 4 3 7 7 Cl 1.73600 * 120.42931 * 180.02562 * 6 5 4 8 8 C 1.38616 * 120.41481 * 180.25297 * 2 1 3 9 9 C 1.50703 * 120.79175 * 359.97438 * 8 2 1 10 10 H 1.09003 * 109.47278 * 0.27573 * 9 8 2 11 11 C 1.50697 * 109.47102 * 120.27552 * 9 8 2 12 12 H 1.07997 * 119.99831 * 34.39348 * 11 9 8 13 13 C 1.37876 * 120.00349 * 214.38670 * 11 9 8 14 14 N 1.31512 * 120.00498 * 184.77222 * 13 11 9 15 15 Si 1.86802 * 119.99721 * 4.77390 * 13 11 9 16 16 H 1.48500 * 109.47413 * 84.87160 * 15 13 11 17 17 H 1.48502 * 109.47232 * 204.87280 * 15 13 11 18 18 H 1.48502 * 109.47084 * 324.87122 * 15 13 11 19 19 C 1.53002 * 109.47098 * 240.27902 * 9 8 2 20 20 N 1.46905 * 109.47048 * 65.45848 * 19 9 8 21 21 H 1.08998 * 109.47725 * 89.99795 * 1 2 3 22 22 H 1.08996 * 109.47369 * 210.00232 * 1 2 3 23 23 H 1.09008 * 109.47158 * 329.99783 * 1 2 3 24 24 H 1.08001 * 119.60131 * 0.02562 * 3 2 1 25 25 H 1.07997 * 119.63265 * 179.97438 * 5 4 3 26 26 H 0.96997 * 119.99779 * 180.02562 * 14 13 11 27 27 H 1.08999 * 109.47243 * 185.46002 * 19 9 8 28 28 H 1.08997 * 109.46648 * 305.46047 * 19 9 8 29 29 H 1.00898 * 110.99754 * 180.02562 * 20 19 9 30 30 H 1.00893 * 111.00087 * 303.95455 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5252 1.2009 0.0053 5 6 4.2264 0.0840 0.0056 6 6 3.5956 -1.1469 0.0008 7 17 4.5266 -2.6121 0.0018 8 6 2.2087 -1.1954 -0.0053 9 6 1.4828 -2.5161 -0.0105 10 1 0.4072 -2.3395 -0.0143 11 6 1.8681 -3.2961 -1.2410 12 1 2.8702 -3.2204 -1.6365 13 6 0.9415 -4.1067 -1.8617 14 7 1.3020 -4.8591 -2.8783 15 14 -0.8263 -4.1361 -1.2587 16 1 -1.5830 -3.0247 -1.8892 17 1 -1.4527 -5.4318 -1.6249 18 1 -0.8485 -3.9751 0.2174 19 6 1.8644 -3.3127 1.2387 20 7 1.3725 -2.6145 2.4340 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 1.6670 2.1276 0.0004 25 1 5.3053 0.1309 0.0096 26 1 0.6499 -5.4290 -3.3151 27 1 1.4166 -4.3052 1.1877 28 1 2.9490 -3.4058 1.2930 29 1 1.6125 -3.1209 3.2730 30 1 1.7226 -1.6689 2.4701 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260853008.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:12 Heat of formation + Delta-G solvation = 21.151809 kcal Electronic energy + Delta-G solvation = -15511.339999 eV Core-core repulsion = 12946.078928 eV Total energy + Delta-G solvation = -2565.261071 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.072 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.02516 -36.26700 -35.61455 -32.87960 -32.44278 -31.18035 -28.72375 -26.87526 -23.88832 -23.19837 -21.67371 -19.79117 -17.49228 -16.29863 -15.85220 -15.29299 -15.11413 -14.17853 -13.99506 -13.69049 -13.14700 -13.01805 -12.68224 -12.46806 -12.36837 -11.56285 -11.51171 -11.12340 -10.81224 -10.73277 -10.52239 -10.36512 -9.84346 -9.39635 -8.93787 -8.64988 -8.50625 -8.33150 -7.86230 -6.15646 -4.17341 1.38679 1.72092 2.71861 3.24040 3.33927 3.39809 4.10406 4.35609 4.77682 5.05570 5.13896 5.28454 5.34528 5.44534 5.48450 5.87625 5.95339 6.05538 6.26835 6.30821 6.38100 6.51318 6.67900 6.94076 6.98728 7.24057 7.53083 7.78405 7.96888 8.23490 8.41328 8.93706 9.44344 10.95524 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.011774 C = 0.010114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.643293 B = 2377.484541 C = 2767.658541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.132 4.132 3 C 0.090 3.910 4 N -0.488 5.488 5 C 0.092 3.908 6 C -0.082 4.082 7 Cl -0.043 7.043 8 C 0.016 3.984 9 C 0.045 3.955 10 H 0.060 0.940 11 C -0.512 4.512 12 H 0.090 0.910 13 C 0.079 3.921 14 N -0.890 5.890 15 Si 0.861 3.139 16 H -0.274 1.274 17 H -0.289 1.289 18 H -0.254 1.254 19 C 0.052 3.948 20 N -0.856 5.856 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.063 0.937 24 H 0.152 0.848 25 H 0.153 0.847 26 H 0.266 0.734 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.326 0.674 30 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.176 7.598 7.641 10.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.135 4.135 3 C -0.067 4.067 4 N -0.197 5.197 5 C -0.065 4.065 6 C -0.111 4.111 7 Cl -0.014 7.014 8 C 0.007 3.993 9 C 0.026 3.974 10 H 0.078 0.922 11 C -0.550 4.550 12 H 0.108 0.892 13 C -0.124 4.124 14 N -0.527 5.527 15 Si 0.688 3.312 16 H -0.200 1.200 17 H -0.215 1.215 18 H -0.178 1.178 19 C -0.079 4.079 20 N -0.384 5.384 21 H 0.090 0.910 22 H 0.098 0.902 23 H 0.082 0.918 24 H 0.169 0.831 25 H 0.171 0.829 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.137 0.863 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.921 7.993 7.174 10.780 hybrid contribution -0.276 -1.006 0.299 1.085 sum 0.645 6.987 7.473 10.251 Atomic orbital electron populations 1.20779 0.90350 1.03054 1.02710 1.20781 0.97719 0.92758 1.02220 1.22566 0.89882 0.97354 0.96892 1.67694 1.08391 1.29612 1.13985 1.22561 1.00110 0.86258 0.97584 1.21920 0.93058 0.88895 1.07209 1.98344 1.71934 1.34782 1.96293 1.20711 0.91626 0.97582 0.89350 1.18500 0.96385 0.87548 0.94962 0.92167 1.21001 1.00674 1.24774 1.08535 0.89179 1.25016 0.98355 0.94645 0.94400 1.69878 1.34881 1.25829 1.22111 0.87074 0.85673 0.77659 0.80809 1.20002 1.21501 1.17765 1.22576 0.98410 0.97930 0.88934 1.58967 1.68058 1.06133 1.05264 0.90976 0.90151 0.91762 0.83091 0.82926 0.92451 0.91410 0.94209 0.86277 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 9.44 36.00 0.34 -1.38 16 2 C -0.13 -2.30 5.90 -104.49 -0.62 -2.92 16 3 C 0.09 1.43 10.86 -17.55 -0.19 1.24 16 4 N -0.49 -8.30 10.36 -13.22 -0.14 -8.44 16 5 C 0.09 1.56 10.99 -17.51 -0.19 1.37 16 6 C -0.08 -1.54 6.00 -39.36 -0.24 -1.78 16 7 Cl -0.04 -0.81 23.20 -51.86 -1.20 -2.01 16 8 C 0.02 0.31 3.84 -104.28 -0.40 -0.09 16 9 C 0.05 1.00 1.52 -92.92 -0.14 0.85 16 10 H 0.06 1.35 2.83 -51.93 -0.15 1.21 16 11 C -0.51 -13.42 8.02 -34.44 -0.28 -13.69 16 12 H 0.09 2.55 6.15 -52.49 -0.32 2.22 16 13 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 14 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 15 Si 0.86 20.51 26.98 -169.99 -4.59 15.92 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.25 -5.86 6.84 56.52 0.39 -5.47 16 19 C 0.05 1.05 6.04 -3.82 -0.02 1.02 16 20 N -0.86 -14.65 9.62 -10.37 -0.10 -14.75 16 21 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 22 H 0.08 1.35 6.22 -51.93 -0.32 1.03 16 23 H 0.06 0.78 8.09 -51.92 -0.42 0.36 16 24 H 0.15 1.90 8.06 -52.49 -0.42 1.47 16 25 H 0.15 2.20 8.06 -52.49 -0.42 1.78 16 26 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 28 H 0.04 0.79 4.99 -51.93 -0.26 0.53 16 29 H 0.33 4.79 9.08 -39.29 -0.36 4.43 16 30 H 0.33 5.36 8.09 -39.30 -0.32 5.04 16 LS Contribution 259.39 15.07 3.91 3.91 Total: -1.00 -29.04 259.39 -6.17 -35.20 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -2.99 Total: 8.84 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -1.83 Total: -13.31 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.54 Total: -48.56 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.59 Total: 15.92 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.20 Total: -2.01 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.04 -6.17 -35.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260853008.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.355 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds