Wall clock time and date at job start Mon Mar 30 2020 04:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38234 * 120.41479 * 2 1 4 4 N 1.31845 * 120.79497 * 179.73017 * 3 2 1 5 5 C 1.31878 * 121.74139 * 0.26785 * 4 3 2 6 6 C 1.38307 * 120.74125 * 359.97438 * 5 4 3 7 7 Cl 1.73600 * 120.42931 * 180.02562 * 6 5 4 8 8 C 1.38616 * 120.41481 * 180.25297 * 2 1 3 9 9 C 1.50703 * 120.79175 * 359.97438 * 8 2 1 10 10 H 1.09003 * 109.47278 * 0.27573 * 9 8 2 11 11 C 1.50697 * 109.47102 * 120.27552 * 9 8 2 12 12 H 1.07997 * 119.99831 * 34.39348 * 11 9 8 13 13 C 1.37876 * 120.00349 * 214.38670 * 11 9 8 14 14 N 1.31512 * 120.00498 * 184.77222 * 13 11 9 15 15 Si 1.86802 * 119.99721 * 4.77390 * 13 11 9 16 16 H 1.48500 * 109.47413 * 84.87160 * 15 13 11 17 17 H 1.48502 * 109.47232 * 204.87280 * 15 13 11 18 18 H 1.48502 * 109.47084 * 324.87122 * 15 13 11 19 19 C 1.53002 * 109.47098 * 240.27902 * 9 8 2 20 20 N 1.46905 * 109.47048 * 65.45848 * 19 9 8 21 21 H 1.08998 * 109.47725 * 89.99795 * 1 2 3 22 22 H 1.08996 * 109.47369 * 210.00232 * 1 2 3 23 23 H 1.09008 * 109.47158 * 329.99783 * 1 2 3 24 24 H 1.08001 * 119.60131 * 0.02562 * 3 2 1 25 25 H 1.07997 * 119.63265 * 179.97438 * 5 4 3 26 26 H 0.96997 * 119.99779 * 180.02562 * 14 13 11 27 27 H 1.08999 * 109.47243 * 185.46002 * 19 9 8 28 28 H 1.08997 * 109.46648 * 305.46047 * 19 9 8 29 29 H 1.00898 * 110.99754 * 180.02562 * 20 19 9 30 30 H 1.00893 * 111.00087 * 303.95455 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5252 1.2009 0.0053 5 6 4.2264 0.0840 0.0056 6 6 3.5956 -1.1469 0.0008 7 17 4.5266 -2.6121 0.0018 8 6 2.2087 -1.1954 -0.0053 9 6 1.4828 -2.5161 -0.0105 10 1 0.4072 -2.3395 -0.0143 11 6 1.8681 -3.2961 -1.2410 12 1 2.8702 -3.2204 -1.6365 13 6 0.9415 -4.1067 -1.8617 14 7 1.3020 -4.8591 -2.8783 15 14 -0.8263 -4.1361 -1.2587 16 1 -1.5830 -3.0247 -1.8892 17 1 -1.4527 -5.4318 -1.6249 18 1 -0.8485 -3.9751 0.2174 19 6 1.8644 -3.3127 1.2387 20 7 1.3725 -2.6145 2.4340 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 1.6670 2.1276 0.0004 25 1 5.3053 0.1309 0.0096 26 1 0.6499 -5.4290 -3.3151 27 1 1.4166 -4.3052 1.1877 28 1 2.9490 -3.4058 1.2930 29 1 1.6125 -3.1209 3.2730 30 1 1.7226 -1.6689 2.4701 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260853008.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:06 Heat of formation + Delta-G solvation = 0.602144 kcal Electronic energy + Delta-G solvation = -15512.231099 eV Core-core repulsion = 12946.078928 eV Total energy + Delta-G solvation = -2566.152172 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.072 amu Computer time = 5.80 seconds Orbital eigenvalues (eV) -41.40138 -37.77528 -37.13701 -34.41122 -34.21912 -32.61507 -30.38521 -28.16544 -25.73914 -24.65112 -23.02622 -21.38670 -19.33007 -17.84997 -17.30589 -16.86182 -16.47302 -15.88754 -15.45466 -15.22421 -14.76600 -14.39364 -14.35811 -13.89849 -13.71976 -13.09520 -12.86020 -12.84368 -12.52020 -12.37296 -12.12480 -11.95054 -11.68214 -11.19121 -10.66696 -10.37432 -10.02335 -9.69525 -9.32992 -8.24223 -6.28339 0.05506 0.29969 1.28491 1.34981 1.39940 1.50377 2.37335 2.75644 3.09847 3.55106 3.80122 3.86458 3.93952 4.02997 4.22428 4.57028 4.61775 4.66989 4.79664 4.89241 4.93763 5.18758 5.26206 5.29786 5.53737 5.68822 5.72582 6.22158 6.42141 6.67673 6.85157 6.91315 7.36457 8.90354 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.022383 B = 0.011774 C = 0.010114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.643293 B = 2377.484541 C = 2767.658541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.135 4.135 3 C 0.099 3.901 4 N -0.491 5.491 5 C 0.094 3.906 6 C -0.096 4.096 7 Cl -0.054 7.054 8 C -0.010 4.010 9 C 0.048 3.952 10 H 0.059 0.941 11 C -0.505 4.505 12 H 0.061 0.939 13 C 0.023 3.977 14 N -0.943 5.943 15 Si 0.920 3.080 16 H -0.263 1.263 17 H -0.295 1.295 18 H -0.242 1.242 19 C 0.059 3.941 20 N -0.849 5.849 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.103 0.897 24 H 0.192 0.808 25 H 0.175 0.825 26 H 0.264 0.736 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.343 0.657 30 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 9.889 9.134 13.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.137 4.137 3 C -0.058 4.058 4 N -0.200 5.200 5 C -0.062 4.062 6 C -0.125 4.125 7 Cl -0.025 7.025 8 C -0.019 4.019 9 C 0.029 3.971 10 H 0.077 0.923 11 C -0.544 4.544 12 H 0.079 0.921 13 C -0.175 4.175 14 N -0.582 5.582 15 Si 0.744 3.256 16 H -0.188 1.188 17 H -0.221 1.221 18 H -0.166 1.166 19 C -0.072 4.072 20 N -0.379 5.379 21 H 0.088 0.912 22 H 0.083 0.917 23 H 0.122 0.878 24 H 0.209 0.791 25 H 0.192 0.808 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.156 0.844 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.012 10.305 8.701 13.487 hybrid contribution 0.101 -1.611 -0.124 1.619 sum 0.113 8.695 8.577 12.213 Atomic orbital electron populations 1.20829 0.88889 1.04253 1.02872 1.21054 0.98858 0.92327 1.01490 1.23166 0.89557 0.98323 0.94705 1.67814 1.09068 1.29240 1.13848 1.22886 1.01260 0.85515 0.96576 1.22082 0.92948 0.89205 1.08281 1.98336 1.72125 1.35649 1.96411 1.20618 0.92127 0.97399 0.91723 1.18327 0.96529 0.88547 0.93672 0.92339 1.21259 0.99312 1.24378 1.09427 0.92110 1.25758 1.02368 0.94649 0.94725 1.70023 1.36161 1.27723 1.24341 0.86140 0.81053 0.77513 0.80876 1.18841 1.22140 1.16558 1.22255 0.98297 0.96859 0.89744 1.58810 1.67768 1.06491 1.04821 0.91236 0.91695 0.87845 0.79129 0.80751 0.92697 0.93482 0.94184 0.84424 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.06 9.44 71.23 0.67 -2.38 16 2 C -0.14 -4.31 5.90 -19.78 -0.12 -4.42 16 3 C 0.10 2.76 10.86 84.69 0.92 3.68 16 4 N -0.49 -15.10 10.36 -195.75 -2.03 -17.13 16 5 C 0.09 3.01 10.99 84.70 0.93 3.94 16 6 C -0.10 -3.53 6.00 22.41 0.13 -3.40 16 7 Cl -0.05 -2.06 23.20 -2.72 -0.06 -2.12 16 8 C -0.01 -0.39 3.84 -19.65 -0.08 -0.47 16 9 C 0.05 2.10 1.52 -12.29 -0.02 2.08 16 10 H 0.06 2.55 2.83 -2.39 -0.01 2.54 16 11 C -0.51 -26.91 8.02 25.60 0.21 -26.71 16 12 H 0.06 3.54 6.15 -2.91 -0.02 3.53 16 13 C 0.02 1.27 5.47 84.65 0.46 1.74 16 14 N -0.94 -57.17 13.96 21.45 0.30 -56.87 16 15 Si 0.92 42.61 26.98 68.60 1.85 44.46 16 16 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 18 H -0.24 -10.63 6.84 99.48 0.68 -9.95 16 19 C 0.06 2.36 6.04 86.30 0.52 2.89 16 20 N -0.85 -27.33 9.62 -186.71 -1.80 -29.13 16 21 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.06 2.00 6.22 -2.39 -0.01 1.98 16 23 H 0.10 1.99 8.09 -2.38 -0.02 1.97 16 24 H 0.19 3.73 8.06 -2.91 -0.02 3.70 16 25 H 0.18 4.64 8.06 -2.91 -0.02 4.62 16 26 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.04 1.59 4.99 -2.39 -0.01 1.58 16 29 H 0.34 9.30 9.08 -89.70 -0.81 8.48 16 30 H 0.33 10.16 8.09 -89.70 -0.73 9.44 16 Total: -1.00 -63.17 259.39 1.53 -61.64 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -0.37 Total: 22.21 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 3.64 Total: -23.06 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -3.53 Total: -103.13 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.85 Total: 44.46 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.06 Total: -2.12 kcal Total: -63.17 1.53 -61.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260853008.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.242 kcal (2) G-P(sol) polarization free energy of solvation -63.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.81 seconds