Wall clock time and date at job start Mon Mar 30 2020 03:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99964 * 2 1 4 4 H 1.48499 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46790 * 299.99711 * 3 2 1 6 6 H 1.48500 * 109.46974 * 59.99524 * 3 2 1 7 7 C 1.37875 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00672 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99629 * 0.02562 * 7 2 1 10 10 C 1.50710 * 109.47031 * 179.97438 * 9 7 2 11 11 N 1.34799 * 126.05055 * 264.97816 * 10 9 7 12 12 H 0.96998 * 126.06165 * 0.02663 * 11 10 9 13 13 N 1.39996 * 107.87837 * 180.02562 * 11 10 9 14 14 C 1.31001 * 108.15120 * 0.04514 * 13 11 10 15 15 C 1.35832 * 126.04762 * 84.97743 * 10 9 7 16 16 C 1.50599 * 124.44879 * 359.62107 * 15 10 9 17 17 C 1.52767 * 110.88412 * 160.77890 * 16 15 10 18 18 S 1.81800 * 108.97586 * 52.60598 * 17 16 15 19 19 O 1.42104 * 109.46608 * 178.17063 * 18 17 16 20 20 C 1.51197 * 124.94955 * 179.82281 * 14 13 11 21 21 H 0.96999 * 120.00166 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47086 * 60.00079 * 9 7 2 23 23 H 1.08999 * 109.47760 * 299.99698 * 9 7 2 24 24 H 1.08999 * 109.19445 * 40.42329 * 16 15 10 25 25 H 1.08998 * 109.19202 * 281.14341 * 16 15 10 26 26 H 1.08998 * 109.55671 * 292.76087 * 17 16 15 27 27 H 1.09001 * 109.55197 * 172.45235 * 17 16 15 28 28 H 1.09001 * 109.69175 * 42.67707 * 20 14 13 29 29 H 1.08998 * 109.68857 * 282.10431 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 7 2.6734 -4.3096 -1.0851 12 1 2.4187 -4.1354 -2.0047 13 7 3.5664 -5.2961 -0.6501 14 6 3.6523 -5.2221 0.6550 15 6 2.8229 -4.1897 1.0946 16 6 2.5969 -3.7215 2.5079 17 6 3.0096 -4.7976 3.5107 18 16 4.7094 -5.3274 3.1432 19 8 5.1192 -6.2985 4.0963 20 6 4.5114 -6.1177 1.5186 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 1.5404 -3.4908 2.6444 25 1 3.1854 -2.8214 2.6857 26 1 2.3359 -5.6505 3.4285 27 1 2.9645 -4.3912 4.5211 28 1 5.4876 -6.2509 1.0524 29 1 4.0264 -7.0863 1.6396 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260872436.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:46 Heat of formation + Delta-G solvation = 19.543567 kcal Electronic energy + Delta-G solvation = -14921.920086 eV Core-core repulsion = 12358.632983 eV Total energy + Delta-G solvation = -2563.287104 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.79024 -35.63072 -34.03731 -33.75174 -32.05522 -29.75970 -27.78050 -26.92088 -23.51684 -22.83242 -19.83407 -19.02085 -16.97998 -16.64768 -16.33299 -15.14811 -15.06682 -14.81495 -14.51940 -13.66009 -13.45028 -13.28144 -12.88328 -12.42870 -12.03765 -11.88244 -11.50154 -11.36248 -11.09451 -10.91553 -10.73616 -10.36968 -9.92155 -9.66736 -9.61528 -8.72403 -8.59451 -8.11363 -7.64243 -6.21430 -4.26870 1.66271 2.51474 2.62058 3.21242 3.22465 3.30768 3.35651 3.44067 3.92518 4.32169 4.95363 5.14372 5.15250 5.22453 5.34560 5.51447 5.68768 5.98471 6.05549 6.24188 6.38938 6.50523 6.63779 7.17440 7.26925 7.33442 7.73919 7.88460 8.09803 8.26790 8.77975 9.39036 10.88268 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.030948 B = 0.007045 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.523069 B = 3973.520050 C = 4407.288096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.068 3.932 10 C 0.157 3.843 11 N -0.473 5.473 12 H 0.437 0.563 13 N -0.317 5.317 14 C 0.096 3.904 15 C -0.272 4.272 16 C -0.004 4.004 17 C -0.426 4.426 18 S 1.247 4.753 19 O -0.866 6.866 20 C -0.352 4.352 21 H 0.264 0.736 22 H 0.030 0.970 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.125 0.875 29 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.988 -4.968 2.832 8.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.030 3.970 10 C 0.027 3.973 11 N -0.179 5.179 12 H 0.280 0.720 13 N -0.141 5.141 14 C -0.070 4.070 15 C -0.284 4.284 16 C -0.043 4.043 17 C -0.565 4.565 18 S 1.446 4.554 19 O -0.861 6.861 20 C -0.490 4.490 21 H 0.074 0.926 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.143 0.857 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.094 -5.409 2.366 9.229 hybrid contribution -1.574 -0.378 0.043 1.620 sum 5.520 -5.786 2.408 8.352 Atomic orbital electron populations 1.69948 1.06104 1.27134 1.49776 1.24984 0.94867 0.99406 0.94766 0.86432 0.80200 0.83122 0.77726 1.19429 1.21033 1.20756 1.20970 0.93285 0.89178 1.52024 0.91874 1.18155 0.91587 0.87879 0.99416 1.22088 0.95854 0.93599 0.85761 1.46091 1.35904 1.26953 1.08999 0.71979 1.77149 1.13535 1.11596 1.11818 1.20900 0.97956 0.96444 0.91746 1.19500 1.08708 1.03908 0.96245 1.19194 1.02835 0.95430 0.86867 1.27377 1.17411 1.05951 1.05732 1.70868 0.93135 1.07307 0.84126 1.93026 1.73471 1.64889 1.54756 1.26081 1.04021 1.05042 1.13880 0.92634 0.95157 0.93100 0.90295 0.89749 0.89673 0.87087 0.85654 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.00 13.29 55.43 0.74 -23.26 15 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 19.68 29.54 -169.99 -5.02 14.66 15 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 6 H -0.28 -6.15 7.11 56.52 0.40 -5.74 15 7 C -0.52 -12.73 9.09 -34.44 -0.31 -13.04 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 15 9 C 0.07 1.53 5.21 -29.03 -0.15 1.38 15 10 C 0.16 3.09 6.40 -82.15 -0.53 2.56 15 11 N -0.47 -8.61 7.35 33.55 0.25 -8.36 15 12 H 0.44 6.85 8.96 -182.68 -1.64 5.21 15 13 N -0.32 -5.83 12.71 33.76 0.43 -5.40 15 14 C 0.10 1.63 6.94 -82.22 -0.57 1.06 15 15 C -0.27 -4.83 5.81 -105.05 -0.61 -5.44 15 16 C 0.00 -0.06 5.60 -28.05 -0.16 -0.22 15 17 C -0.43 -5.52 6.43 37.04 0.24 -5.28 15 18 S 1.25 15.53 13.66 -107.50 -1.47 14.07 15 19 O -0.87 -15.22 18.14 -35.23 -0.64 -15.86 15 20 C -0.35 -4.83 6.84 36.25 0.25 -4.59 15 21 H 0.26 6.75 8.31 -40.82 -0.34 6.41 15 22 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.05 1.20 7.37 -51.93 -0.38 0.81 15 24 H 0.08 1.27 7.41 -51.93 -0.38 0.89 15 25 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 27 H 0.11 1.24 8.14 -51.93 -0.42 0.82 15 28 H 0.13 1.50 8.14 -51.93 -0.42 1.08 15 29 H 0.10 1.36 8.14 -51.93 -0.42 0.94 15 LS Contribution 262.44 15.07 3.95 3.95 Total: -1.00 -31.99 262.44 -8.18 -40.17 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.48 Total: 2.09 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -1.94 Total: -22.07 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 1.41 Total: -37.02 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.64 Total: -15.86 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 15.53 SS G_CDS: -1.47 Total: 14.07 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.99 -8.18 -40.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260872436.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.718 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds