Wall clock time and date at job start Mon Mar 30 2020 03:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99964 * 2 1 4 4 H 1.48499 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46790 * 299.99711 * 3 2 1 6 6 H 1.48500 * 109.46974 * 59.99524 * 3 2 1 7 7 C 1.37875 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00672 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99629 * 0.02562 * 7 2 1 10 10 C 1.50710 * 109.47031 * 179.97438 * 9 7 2 11 11 N 1.34799 * 126.05055 * 264.97816 * 10 9 7 12 12 H 0.96998 * 126.06165 * 0.02663 * 11 10 9 13 13 N 1.39996 * 107.87837 * 180.02562 * 11 10 9 14 14 C 1.31001 * 108.15120 * 0.04514 * 13 11 10 15 15 C 1.35832 * 126.04762 * 84.97743 * 10 9 7 16 16 C 1.50599 * 124.44879 * 359.62107 * 15 10 9 17 17 C 1.52767 * 110.88412 * 160.77890 * 16 15 10 18 18 S 1.81800 * 108.97586 * 52.60598 * 17 16 15 19 19 O 1.42104 * 109.46608 * 178.17063 * 18 17 16 20 20 C 1.51197 * 124.94955 * 179.82281 * 14 13 11 21 21 H 0.96999 * 120.00166 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47086 * 60.00079 * 9 7 2 23 23 H 1.08999 * 109.47760 * 299.99698 * 9 7 2 24 24 H 1.08999 * 109.19445 * 40.42329 * 16 15 10 25 25 H 1.08998 * 109.19202 * 281.14341 * 16 15 10 26 26 H 1.08998 * 109.55671 * 292.76087 * 17 16 15 27 27 H 1.09001 * 109.55197 * 172.45235 * 17 16 15 28 28 H 1.09001 * 109.69175 * 42.67707 * 20 14 13 29 29 H 1.08998 * 109.68857 * 282.10431 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 7 2.6734 -4.3096 -1.0851 12 1 2.4187 -4.1354 -2.0047 13 7 3.5664 -5.2961 -0.6501 14 6 3.6523 -5.2221 0.6550 15 6 2.8229 -4.1897 1.0946 16 6 2.5969 -3.7215 2.5079 17 6 3.0096 -4.7976 3.5107 18 16 4.7094 -5.3274 3.1432 19 8 5.1192 -6.2985 4.0963 20 6 4.5114 -6.1177 1.5186 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 1.5404 -3.4908 2.6444 25 1 3.1854 -2.8214 2.6857 26 1 2.3359 -5.6505 3.4285 27 1 2.9645 -4.3912 4.5211 28 1 5.4876 -6.2509 1.0524 29 1 4.0264 -7.0863 1.6396 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260872436.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:46 Heat of formation + Delta-G solvation = -3.238162 kcal Electronic energy + Delta-G solvation = -14922.907976 eV Core-core repulsion = 12358.632983 eV Total energy + Delta-G solvation = -2564.274993 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.22302 -36.89065 -35.55939 -35.28875 -33.61203 -31.26597 -29.05611 -28.53451 -25.23295 -24.17912 -21.23433 -20.40120 -18.50585 -18.11518 -17.86292 -16.49706 -16.39651 -16.12733 -15.96691 -15.00466 -14.70536 -14.60679 -14.31070 -14.16599 -13.48289 -13.34922 -13.02344 -12.72319 -12.56423 -12.47280 -12.27495 -11.88938 -11.58942 -11.50262 -10.87646 -10.55266 -10.16507 -9.23726 -9.08739 -8.15351 -6.27088 0.59738 1.06107 1.48688 1.52217 1.53679 1.63224 1.83874 2.08020 2.49227 2.79421 3.19051 3.68159 3.91361 4.13200 4.23470 4.24595 4.52146 4.61228 4.76541 4.86734 5.08984 5.16717 5.34186 5.39092 5.64338 5.78692 5.86430 6.12959 6.51710 6.82939 6.84942 7.42557 8.94100 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.030948 B = 0.007045 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.523069 B = 3973.520050 C = 4407.288096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.014 3.986 3 Si 0.960 3.040 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.080 3.920 10 C 0.132 3.868 11 N -0.472 5.472 12 H 0.443 0.557 13 N -0.327 5.327 14 C 0.098 3.902 15 C -0.268 4.268 16 C -0.005 4.005 17 C -0.426 4.426 18 S 1.312 4.688 19 O -0.911 6.911 20 C -0.356 4.356 21 H 0.265 0.735 22 H 0.012 0.988 23 H 0.036 0.964 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.134 0.866 28 H 0.147 0.853 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.480 -4.907 3.482 9.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.185 4.185 3 Si 0.785 3.215 4 H -0.184 1.184 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.558 4.558 8 H 0.081 0.919 9 C 0.041 3.959 10 C 0.002 3.998 11 N -0.180 5.180 12 H 0.289 0.711 13 N -0.151 5.151 14 C -0.069 4.069 15 C -0.279 4.279 16 C -0.045 4.045 17 C -0.564 4.564 18 S 1.511 4.489 19 O -0.906 6.906 20 C -0.494 4.494 21 H 0.074 0.926 22 H 0.030 0.970 23 H 0.054 0.946 24 H 0.085 0.915 25 H 0.117 0.883 26 H 0.098 0.902 27 H 0.152 0.848 28 H 0.165 0.835 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.594 -5.358 3.007 10.565 hybrid contribution -2.068 -0.450 -0.190 2.125 sum 6.526 -5.808 2.817 9.179 Atomic orbital electron populations 1.70057 1.07581 1.27915 1.51156 1.25754 0.95523 1.02669 0.94555 0.85460 0.79362 0.79146 0.77492 1.18439 1.21237 1.20411 1.21238 0.93375 0.90149 1.51049 0.91853 1.17831 0.91703 0.88636 0.97735 1.21764 0.96827 0.94081 0.87161 1.46108 1.35855 1.26800 1.09207 0.71142 1.77135 1.13625 1.11620 1.12735 1.21283 0.97755 0.96302 0.91532 1.19846 1.07730 1.03398 0.96929 1.19241 1.02478 0.96727 0.86033 1.27356 1.17574 1.05128 1.06346 1.70538 0.91598 1.04818 0.81989 1.92934 1.74733 1.66318 1.56617 1.26226 1.04561 1.04496 1.14097 0.92625 0.97020 0.94642 0.91526 0.88345 0.90223 0.84832 0.83478 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.43 13.29 21.45 0.28 -50.15 15 2 C 0.01 0.71 5.46 84.65 0.46 1.17 15 3 Si 0.96 39.89 29.54 68.60 2.03 41.92 15 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 5 H -0.29 -11.92 7.11 99.48 0.71 -11.21 15 6 H -0.28 -11.36 7.11 99.48 0.71 -10.65 15 7 C -0.52 -25.58 9.09 25.60 0.23 -25.34 15 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 15 9 C 0.08 3.65 5.21 29.11 0.15 3.80 15 10 C 0.13 5.15 6.40 41.55 0.27 5.42 15 11 N -0.47 -16.94 7.35 -47.78 -0.35 -17.29 15 12 H 0.44 13.90 8.96 -213.39 -1.91 11.98 15 13 N -0.33 -11.55 12.71 -47.12 -0.60 -12.15 15 14 C 0.10 3.13 6.94 43.15 0.30 3.43 15 15 C -0.27 -9.16 5.81 -20.14 -0.12 -9.28 15 16 C -0.01 -0.16 5.60 29.74 0.17 0.01 15 17 C -0.43 -10.01 6.43 71.90 0.46 -9.54 15 18 S 1.31 29.19 13.66 -56.49 -0.77 28.42 15 19 O -0.91 -29.84 18.14 -148.98 -2.70 -32.54 15 20 C -0.36 -8.84 6.84 71.39 0.49 -8.35 15 21 H 0.26 13.67 8.31 -92.71 -0.77 12.89 15 22 H 0.01 0.56 8.14 -2.38 -0.02 0.54 15 23 H 0.04 1.71 7.37 -2.39 -0.02 1.70 15 24 H 0.07 2.11 7.41 -2.39 -0.02 2.09 15 25 H 0.10 2.57 8.14 -2.39 -0.02 2.55 15 26 H 0.08 2.01 8.14 -2.39 -0.02 1.99 15 27 H 0.13 2.59 8.14 -2.39 -0.02 2.57 15 28 H 0.15 3.05 8.14 -2.39 -0.02 3.03 15 29 H 0.10 2.51 8.14 -2.39 -0.02 2.49 15 Total: -1.00 -66.67 262.44 -0.44 -67.11 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -0.74 Total: 13.39 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 2.41 Total: -38.70 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -0.67 Total: -79.59 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -2.70 Total: -32.54 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Atomic # 16 Polarization: 29.19 SS G_CDS: -0.77 Total: 28.42 kcal Total: -66.67 -0.44 -67.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260872436.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.870 kcal (2) G-P(sol) polarization free energy of solvation -66.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds