Wall clock time and date at job start Mon Mar 30 2020 03:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86802 * 120.00081 * 2 1 4 4 H 1.48503 * 109.46977 * 274.98114 * 3 2 1 5 5 H 1.48499 * 109.46888 * 34.97919 * 3 2 1 6 6 H 1.48498 * 109.47132 * 154.98454 * 3 2 1 7 7 C 1.38986 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00288 * 185.91864 * 7 2 1 9 9 N 1.37344 * 119.99904 * 5.90732 * 7 2 1 10 10 C 1.36562 * 126.09099 * 174.15598 * 9 7 2 11 11 C 1.35504 * 107.52376 * 179.97438 * 10 9 7 12 12 O 1.36174 * 126.05178 * 180.02562 * 11 10 9 13 13 C 1.42908 * 117.00022 * 179.97438 * 12 11 10 14 14 H 1.08998 * 108.84747 * 332.87083 * 13 12 11 15 15 C 1.52940 * 108.88417 * 214.43123 * 13 12 11 16 16 C 1.55160 * 108.95555 * 209.10355 * 15 13 12 17 17 S 1.83988 * 100.90874 * 41.44259 * 16 15 13 18 18 C 1.53703 * 108.88777 * 91.45009 * 13 12 11 19 19 C 1.40504 * 107.89517 * 359.97438 * 11 10 9 20 20 N 1.30958 * 108.41117 * 0.02562 * 19 11 10 21 21 H 0.96994 * 119.99617 * 0.02562 * 1 2 3 22 22 H 1.08002 * 126.24079 * 359.96779 * 10 9 7 23 23 H 1.08999 * 109.60708 * 329.03060 * 15 13 12 24 24 H 1.08995 * 109.60400 * 89.17910 * 15 13 12 25 25 H 1.09001 * 111.12832 * 283.52638 * 16 15 13 26 26 H 1.08997 * 111.16568 * 159.36861 * 16 15 13 27 27 H 1.09005 * 110.34165 * 242.49601 * 18 13 12 28 28 H 1.09002 * 110.34572 * 4.74701 * 18 13 12 29 29 H 1.07998 * 125.79391 * 180.27040 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3892 2.1072 -1.3948 5 1 1.5010 2.6200 0.8026 6 1 3.5933 1.4120 0.5920 7 6 2.0079 -1.2037 -0.0005 8 1 3.0836 -1.2062 0.0959 9 7 1.3267 -2.3899 -0.1235 10 6 1.8859 -3.6292 -0.2510 11 6 0.8741 -4.5258 -0.3437 12 8 1.0080 -5.8738 -0.4821 13 6 -0.1954 -6.6406 -0.5610 14 1 -0.9871 -6.1086 -0.0337 15 6 0.0315 -7.9896 0.1230 16 6 -0.8821 -9.0523 -0.5428 17 16 -0.7075 -8.5989 -2.3174 18 6 -0.5942 -6.7900 -2.0379 19 6 -0.3377 -3.8183 -0.2706 20 7 -0.0654 -2.5441 -0.1394 21 1 -0.4849 0.8400 -0.0004 22 1 2.9420 -3.8539 -0.2739 23 1 1.0752 -8.2843 0.0135 24 1 -0.2137 -7.9085 1.1819 25 1 -1.9146 -8.9469 -0.2100 26 1 -0.5129 -10.0609 -0.3568 27 1 -1.5596 -6.3173 -2.2193 28 1 0.1690 -6.3541 -2.6825 29 1 -1.3258 -4.2522 -0.3113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260879031.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:34 Heat of formation + Delta-G solvation = 43.470225 kcal Electronic energy + Delta-G solvation = -14731.615869 eV Core-core repulsion = 12169.366303 eV Total energy + Delta-G solvation = -2562.249566 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.77476 -37.88290 -34.26184 -33.30202 -30.32556 -29.31607 -27.73515 -25.09032 -24.55444 -21.39374 -20.22775 -19.50216 -17.86113 -16.69489 -16.20083 -15.47524 -15.11363 -14.63245 -13.96413 -13.82638 -13.44631 -13.09828 -12.77371 -12.54719 -12.24468 -11.87160 -11.71033 -11.33219 -11.20492 -10.93753 -10.73433 -10.53589 -10.45624 -9.88406 -9.33124 -8.84223 -8.18894 -7.69504 -6.81481 -6.60224 -4.27898 1.84308 2.32656 2.94482 3.04128 3.09252 3.54381 3.70580 3.95830 4.11415 4.56347 4.69197 4.93728 4.98274 5.03031 5.06890 5.35086 5.47426 5.55771 5.76712 5.93629 6.06955 6.15052 6.53518 6.75200 6.95414 7.24121 7.48797 7.92436 8.44322 8.69067 9.32071 9.55490 10.36774 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.072528 B = 0.004854 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.962492 B = 5766.672615 C = 5843.712522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.321 4.321 8 H 0.118 0.882 9 N -0.141 5.141 10 C -0.074 4.074 11 C -0.077 4.077 12 O -0.299 6.299 13 C 0.093 3.907 14 H 0.075 0.925 15 C -0.125 4.125 16 C -0.065 4.065 17 S -0.303 6.303 18 C -0.083 4.083 19 C -0.107 4.107 20 N -0.245 5.245 21 H 0.274 0.726 22 H 0.151 0.849 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.776 -10.406 0.008 10.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.453 4.453 8 H 0.136 0.864 9 N 0.087 4.913 10 C -0.221 4.221 11 C -0.132 4.132 12 O -0.213 6.213 13 C 0.034 3.966 14 H 0.093 0.907 15 C -0.163 4.163 16 C -0.213 4.213 17 S -0.079 6.079 18 C -0.231 4.231 19 C -0.280 4.280 20 N -0.080 5.080 21 H 0.085 0.915 22 H 0.169 0.831 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.126 0.874 27 H 0.112 0.888 28 H 0.129 0.871 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.249 -9.890 -0.889 10.008 hybrid contribution 0.369 0.617 0.847 1.111 sum -0.879 -9.273 -0.041 9.315 Atomic orbital electron populations 1.70208 1.06169 1.27978 1.35779 1.25634 0.95713 1.00266 0.95450 0.85796 0.79496 0.79911 0.78886 1.19614 1.20115 1.18709 1.19911 0.92233 0.80483 1.52710 0.86428 1.44513 1.03529 1.03758 1.39476 1.20948 0.97105 0.84821 1.19207 1.18243 0.93515 0.82129 1.19360 1.85930 1.28995 1.15342 1.90996 1.22520 0.88966 0.92449 0.92683 0.90660 1.22369 1.01766 0.91898 1.00310 1.24246 1.02848 1.02075 0.92087 1.87725 1.96982 1.09350 1.13801 1.24573 1.05826 0.92398 1.00320 1.23516 0.96687 0.93077 1.14736 1.78136 0.90931 1.14230 1.24665 0.91508 0.83145 0.89073 0.89463 0.89030 0.87393 0.88821 0.87066 0.83321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.25 11.84 55.49 0.66 -20.59 15 2 C 0.05 1.18 5.50 -17.50 -0.10 1.08 15 3 Si 0.94 18.80 29.56 -169.99 -5.02 13.78 15 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 15 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 7 C -0.32 -8.49 10.24 -14.80 -0.15 -8.64 15 8 H 0.12 2.80 7.84 -52.49 -0.41 2.39 15 9 N -0.14 -3.86 3.74 -11.43 -0.04 -3.90 15 10 C -0.07 -1.82 11.49 -16.42 -0.19 -2.01 15 11 C -0.08 -1.78 6.94 -39.70 -0.28 -2.06 15 12 O -0.30 -5.97 9.64 -20.30 -0.20 -6.17 15 13 C 0.09 1.46 2.91 -26.40 -0.08 1.38 15 14 H 0.08 1.18 6.16 -51.93 -0.32 0.86 15 15 C -0.12 -1.54 6.02 -25.62 -0.15 -1.69 15 16 C -0.06 -0.68 7.52 38.30 0.29 -0.39 15 17 S -0.30 -4.17 23.23 -107.50 -2.50 -6.66 15 18 C -0.08 -1.24 7.14 37.52 0.27 -0.97 15 19 C -0.11 -2.59 10.91 -17.07 -0.19 -2.77 15 20 N -0.25 -6.88 10.43 30.78 0.32 -6.56 15 21 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15 22 H 0.15 3.26 8.06 -52.49 -0.42 2.84 15 23 H 0.09 1.17 8.06 -51.93 -0.42 0.76 15 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.09 0.84 8.14 -51.93 -0.42 0.41 15 26 H 0.11 0.93 8.14 -51.93 -0.42 0.50 15 27 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 28 H 0.11 1.84 7.93 -51.93 -0.41 1.42 15 29 H 0.15 3.11 6.93 -52.49 -0.36 2.74 15 LS Contribution 264.27 15.07 3.98 3.98 Total: -1.00 -30.49 264.27 -6.55 -37.04 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.17 Total: 5.16 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -0.57 Total: -16.07 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.94 Total: -31.06 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.20 Total: -6.17 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Atomic # 16 Polarization: -4.17 SS G_CDS: -2.50 Total: -6.66 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.49 -6.55 -37.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260879031.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.506 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds