Wall clock time and date at job start Mon Mar 30 2020 03:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86802 * 120.00081 * 2 1 4 4 H 1.48503 * 109.46977 * 274.98114 * 3 2 1 5 5 H 1.48499 * 109.46888 * 34.97919 * 3 2 1 6 6 H 1.48498 * 109.47132 * 154.98454 * 3 2 1 7 7 C 1.38986 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00288 * 185.91864 * 7 2 1 9 9 N 1.37344 * 119.99904 * 5.90732 * 7 2 1 10 10 C 1.36562 * 126.09099 * 174.15598 * 9 7 2 11 11 C 1.35504 * 107.52376 * 179.97438 * 10 9 7 12 12 O 1.36174 * 126.05178 * 180.02562 * 11 10 9 13 13 C 1.42908 * 117.00022 * 179.97438 * 12 11 10 14 14 H 1.08998 * 108.84747 * 332.87083 * 13 12 11 15 15 C 1.52940 * 108.88417 * 214.43123 * 13 12 11 16 16 C 1.55160 * 108.95555 * 209.10355 * 15 13 12 17 17 S 1.83988 * 100.90874 * 41.44259 * 16 15 13 18 18 C 1.53703 * 108.88777 * 91.45009 * 13 12 11 19 19 C 1.40504 * 107.89517 * 359.97438 * 11 10 9 20 20 N 1.30958 * 108.41117 * 0.02562 * 19 11 10 21 21 H 0.96994 * 119.99617 * 0.02562 * 1 2 3 22 22 H 1.08002 * 126.24079 * 359.96779 * 10 9 7 23 23 H 1.08999 * 109.60708 * 329.03060 * 15 13 12 24 24 H 1.08995 * 109.60400 * 89.17910 * 15 13 12 25 25 H 1.09001 * 111.12832 * 283.52638 * 16 15 13 26 26 H 1.08997 * 111.16568 * 159.36861 * 16 15 13 27 27 H 1.09005 * 110.34165 * 242.49601 * 18 13 12 28 28 H 1.09002 * 110.34572 * 4.74701 * 18 13 12 29 29 H 1.07998 * 125.79391 * 180.27040 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3892 2.1072 -1.3948 5 1 1.5010 2.6200 0.8026 6 1 3.5933 1.4120 0.5920 7 6 2.0079 -1.2037 -0.0005 8 1 3.0836 -1.2062 0.0959 9 7 1.3267 -2.3899 -0.1235 10 6 1.8859 -3.6292 -0.2510 11 6 0.8741 -4.5258 -0.3437 12 8 1.0080 -5.8738 -0.4821 13 6 -0.1954 -6.6406 -0.5610 14 1 -0.9871 -6.1086 -0.0337 15 6 0.0315 -7.9896 0.1230 16 6 -0.8821 -9.0523 -0.5428 17 16 -0.7075 -8.5989 -2.3174 18 6 -0.5942 -6.7900 -2.0379 19 6 -0.3377 -3.8183 -0.2706 20 7 -0.0654 -2.5441 -0.1394 21 1 -0.4849 0.8400 -0.0004 22 1 2.9420 -3.8539 -0.2739 23 1 1.0752 -8.2843 0.0135 24 1 -0.2137 -7.9085 1.1819 25 1 -1.9146 -8.9469 -0.2100 26 1 -0.5129 -10.0609 -0.3568 27 1 -1.5596 -6.3173 -2.2193 28 1 0.1690 -6.3541 -2.6825 29 1 -1.3258 -4.2522 -0.3113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260879031.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:34 Heat of formation + Delta-G solvation = 24.785488 kcal Electronic energy + Delta-G solvation = -14732.426100 eV Core-core repulsion = 12169.366303 eV Total energy + Delta-G solvation = -2563.059797 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.62145 -39.41531 -35.67363 -35.03078 -32.28419 -30.52537 -29.50808 -26.91388 -25.77677 -23.01338 -21.85812 -21.17983 -19.59962 -18.00557 -17.67078 -17.28506 -16.51307 -15.98668 -15.53197 -15.41054 -15.04145 -14.72777 -14.12456 -13.94553 -13.56778 -13.21453 -12.96503 -12.93578 -12.79419 -12.74018 -12.12636 -12.05355 -11.69617 -11.20766 -10.95504 -10.76199 -10.17153 -8.80465 -8.65280 -8.49843 -6.26435 0.78952 1.27669 1.30117 1.40102 1.57767 1.73662 2.07034 2.24906 2.43777 2.87734 3.04857 3.47674 3.85195 3.90007 4.06615 4.20465 4.22597 4.45738 4.59622 4.69110 4.73920 4.85983 4.94002 5.00058 5.13652 5.37356 5.67964 6.02250 6.61064 6.90720 7.40321 7.60390 8.50270 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.072528 B = 0.004854 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.962492 B = 5766.672615 C = 5843.712522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C -0.003 4.003 3 Si 1.018 2.982 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.246 1.246 7 C -0.355 4.355 8 H 0.135 0.865 9 N -0.165 5.165 10 C -0.090 4.090 11 C -0.063 4.063 12 O -0.306 6.306 13 C 0.085 3.915 14 H 0.076 0.924 15 C -0.121 4.121 16 C -0.046 4.046 17 S -0.328 6.328 18 C -0.081 4.081 19 C -0.109 4.109 20 N -0.294 5.294 21 H 0.278 0.722 22 H 0.173 0.827 23 H 0.086 0.914 24 H 0.107 0.893 25 H 0.112 0.888 26 H 0.135 0.865 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 -11.361 0.539 11.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.215 4.215 3 Si 0.837 3.163 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.169 1.169 7 C -0.486 4.486 8 H 0.153 0.847 9 N 0.062 4.938 10 C -0.237 4.237 11 C -0.118 4.118 12 O -0.220 6.220 13 C 0.026 3.974 14 H 0.094 0.906 15 C -0.159 4.159 16 C -0.193 4.193 17 S -0.104 6.104 18 C -0.229 4.229 19 C -0.282 4.282 20 N -0.128 5.128 21 H 0.088 0.912 22 H 0.190 0.810 23 H 0.105 0.895 24 H 0.125 0.875 25 H 0.131 0.869 26 H 0.153 0.847 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.852 -10.881 -0.358 10.920 hybrid contribution 0.204 0.699 0.678 0.995 sum -0.648 -10.182 0.320 10.207 Atomic orbital electron populations 1.70354 1.08209 1.29191 1.37283 1.26806 0.96539 1.04009 0.94114 0.84595 0.78505 0.74267 0.78974 1.19184 1.19775 1.16921 1.20574 0.93347 0.81019 1.53637 0.84731 1.44768 1.03478 1.04765 1.40753 1.21512 0.98622 0.84599 1.18941 1.18263 0.92668 0.83505 1.17404 1.85935 1.31572 1.13675 1.90809 1.22935 0.87450 0.93539 0.93441 0.90605 1.22364 1.02078 0.90296 1.01177 1.24407 1.03825 1.02633 0.88472 1.87838 1.97063 1.08108 1.17373 1.24426 1.05387 0.93636 0.99495 1.23946 0.98270 0.92342 1.13673 1.78032 0.92073 1.16285 1.26443 0.91240 0.80970 0.89548 0.87491 0.86943 0.84714 0.88206 0.89206 0.80771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.19 11.84 21.66 0.26 -45.94 15 2 C 0.00 -0.15 5.50 84.95 0.47 0.32 15 3 Si 1.02 38.38 29.56 68.60 2.03 40.41 15 4 H -0.27 -9.81 7.11 99.48 0.71 -9.10 15 5 H -0.27 -10.03 7.11 99.48 0.71 -9.33 15 6 H -0.25 -8.50 7.11 99.48 0.71 -7.80 15 7 C -0.35 -18.98 10.24 84.01 0.86 -18.12 15 8 H 0.14 6.40 7.84 -2.91 -0.02 6.38 15 9 N -0.16 -9.20 3.74 -190.07 -0.71 -9.91 15 10 C -0.09 -4.45 11.49 83.32 0.96 -3.50 15 11 C -0.06 -2.89 6.94 22.19 0.15 -2.73 15 12 O -0.31 -11.95 9.64 -95.54 -0.92 -12.87 15 13 C 0.09 2.52 2.91 30.81 0.09 2.61 15 14 H 0.08 2.25 6.16 -2.39 -0.01 2.24 15 15 C -0.12 -2.62 6.02 31.31 0.19 -2.44 15 16 C -0.05 -0.80 7.52 72.72 0.55 -0.25 15 17 S -0.33 -8.43 23.23 -56.49 -1.31 -9.74 15 18 C -0.08 -2.36 7.14 72.22 0.52 -1.84 15 19 C -0.11 -5.29 10.91 85.38 0.93 -4.36 15 20 N -0.29 -16.84 10.43 -56.54 -0.59 -17.43 15 21 H 0.28 14.26 8.31 -92.71 -0.77 13.49 15 22 H 0.17 7.42 8.06 -2.91 -0.02 7.39 15 23 H 0.09 2.01 8.06 -2.39 -0.02 1.99 15 24 H 0.11 1.96 8.14 -2.39 -0.02 1.94 15 25 H 0.11 1.57 8.14 -2.39 -0.02 1.55 15 26 H 0.13 1.71 8.14 -2.39 -0.02 1.69 15 27 H 0.10 2.72 8.14 -2.38 -0.02 2.70 15 28 H 0.09 2.99 7.93 -2.39 -0.02 2.97 15 29 H 0.18 7.20 6.93 -2.91 -0.02 7.18 15 Total: -1.00 -67.11 264.27 4.62 -62.49 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 1.15 Total: 23.30 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 4.71 Total: -30.31 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -1.04 Total: -73.28 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.92 Total: -12.87 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.31 Total: -9.74 kcal Total: -67.11 4.62 -62.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260879031.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.277 kcal (2) G-P(sol) polarization free energy of solvation -67.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds