Wall clock time and date at job start Mon Mar 30 2020 03:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30516 * 1 3 3 Si 1.86796 * 119.99833 * 2 1 4 4 H 1.48505 * 109.47279 * 239.99672 * 3 2 1 5 5 H 1.48500 * 109.47148 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47027 * 120.00025 * 3 2 1 7 7 C 1.40459 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99569 * 180.02562 * 7 2 1 9 9 C 1.40335 * 120.00392 * 359.97438 * 7 2 1 10 10 N 1.33328 * 126.79884 * 180.02562 * 9 7 2 11 11 C 1.33557 * 105.52068 * 180.02562 * 10 9 7 12 12 C 1.50699 * 126.07675 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47315 * 89.99610 * 12 11 10 14 14 H 1.09002 * 109.59868 * 305.70343 * 13 12 11 15 15 C 1.52936 * 109.60327 * 185.37757 * 13 12 11 16 16 C 1.53708 * 112.49356 * 210.14994 * 15 13 12 17 17 S 1.83405 * 104.96572 * 2.82802 * 16 15 13 18 18 C 1.55150 * 109.60108 * 66.02683 * 13 12 11 19 19 N 1.30459 * 107.85580 * 0.26198 * 11 10 9 20 20 O 1.21289 * 110.67810 * 359.53767 * 19 11 10 21 21 H 0.97001 * 119.99613 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47029 * 329.99458 * 12 11 10 23 23 H 1.09006 * 109.47563 * 209.99905 * 12 11 10 24 24 H 1.08997 * 108.89603 * 330.94819 * 15 13 12 25 25 H 1.09007 * 108.88686 * 89.36030 * 15 13 12 26 26 H 1.08999 * 110.34661 * 121.69647 * 16 15 13 27 27 H 1.08997 * 110.34531 * 243.96046 * 16 15 13 28 28 H 1.09001 * 111.13220 * 279.09300 * 18 13 12 29 29 H 1.08999 * 111.13517 * 43.27532 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6177 0.0000 4 1 3.0929 1.6964 -1.2125 5 1 1.2741 2.7464 0.0006 6 1 3.0929 1.6964 1.2125 7 6 2.0074 -1.2164 -0.0005 8 1 3.0874 -1.2164 -0.0001 9 6 1.3058 -2.4318 -0.0005 10 7 1.8310 -3.6572 -0.0005 11 6 0.7891 -4.4927 -0.0011 12 6 0.8587 -5.9981 -0.0008 13 6 0.8813 -6.5073 1.4418 14 1 1.6935 -6.0261 1.9867 15 6 1.0865 -8.0229 1.4478 16 6 0.4196 -8.7018 2.6547 17 16 -0.4344 -7.3468 3.5483 18 6 -0.4711 -6.1829 2.1296 19 7 -0.2998 -3.7742 -0.0071 20 8 -0.0323 -2.5912 -0.0011 21 1 -0.4850 0.8401 0.0004 22 1 1.7648 -6.3200 -0.5141 23 1 -0.0133 -6.4023 -0.5152 24 1 0.6668 -8.4395 0.5322 25 1 2.1557 -8.2341 1.4705 26 1 -0.3011 -9.4477 2.3196 27 1 1.1725 -9.1620 3.2946 28 1 -0.4986 -5.1492 2.4742 29 1 -1.3100 -6.3970 1.4675 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260913848.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:09 Heat of formation + Delta-G solvation = 10.372212 kcal Electronic energy + Delta-G solvation = -14810.177076 eV Core-core repulsion = 12246.492273 eV Total energy + Delta-G solvation = -2563.684803 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.01383 -38.37745 -36.06515 -35.46511 -32.87010 -31.09635 -28.75240 -28.46561 -25.35815 -23.57688 -22.50324 -21.09641 -19.56003 -17.99459 -17.42420 -17.34999 -16.78560 -16.75685 -15.30343 -15.21025 -14.89488 -14.45801 -14.10517 -13.61047 -13.44824 -13.09742 -13.02240 -12.90056 -12.56635 -12.27949 -12.06195 -12.00514 -11.82380 -11.62936 -11.35512 -10.97054 -10.89621 -10.25636 -8.96031 -8.80953 -7.09077 0.81994 1.00988 1.34563 1.39804 1.56557 1.57941 2.03516 2.14341 3.01216 3.22167 3.42510 3.49330 3.74711 3.98665 4.05799 4.14816 4.18653 4.40093 4.52338 4.64910 4.79032 4.82284 4.89185 4.93042 5.11081 5.21564 5.56443 5.87141 6.08832 6.31407 6.45323 8.05883 8.32824 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.049789 B = 0.005329 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.235465 B = 5252.962371 C = 5380.421754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.029 3.971 3 Si 1.020 2.980 4 H -0.249 1.249 5 H -0.260 1.260 6 H -0.251 1.251 7 C -0.437 4.437 8 H 0.121 0.879 9 C 0.270 3.730 10 N -0.639 5.639 11 C 0.169 3.831 12 C -0.003 4.003 13 C -0.075 4.075 14 H 0.065 0.935 15 C -0.117 4.117 16 C -0.049 4.049 17 S -0.356 6.356 18 C -0.043 4.043 19 N -0.493 5.493 20 O 0.007 5.993 21 H 0.305 0.695 22 H 0.103 0.897 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.064 0.936 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.383 -9.312 1.498 9.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.193 4.193 3 Si 0.836 3.164 4 H -0.173 1.173 5 H -0.184 1.184 6 H -0.175 1.175 7 C -0.474 4.474 8 H 0.139 0.861 9 C 0.081 3.919 10 N -0.385 5.385 11 C -0.106 4.106 12 C -0.043 4.043 13 C -0.096 4.096 14 H 0.083 0.917 15 C -0.155 4.155 16 C -0.196 4.196 17 S -0.129 6.129 18 C -0.191 4.191 19 N -0.229 5.229 20 O -0.033 6.033 21 H 0.117 0.883 22 H 0.121 0.879 23 H 0.114 0.886 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.083 0.917 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.316 -9.692 2.648 10.133 hybrid contribution 0.344 1.108 -1.026 1.549 sum 1.660 -8.584 1.622 8.892 Atomic orbital electron populations 1.69693 1.09721 1.32944 1.29974 1.27378 0.95902 1.05804 0.90247 0.84685 0.78264 0.72499 0.80909 1.17279 1.18381 1.17497 1.19097 0.95731 0.86255 1.46336 0.86122 1.24814 0.80333 0.95249 0.91468 1.72214 1.29504 0.98724 1.38020 1.25809 0.85325 1.00266 0.99192 1.19932 1.04703 0.82603 0.97111 1.21946 0.95549 0.97433 0.94704 0.91658 1.21942 1.03745 0.90851 0.98960 1.24065 1.01637 0.96237 0.97710 1.87840 1.80280 1.20081 1.24737 1.24183 1.00917 0.98709 0.95320 1.74257 1.25610 0.90627 1.32381 1.85476 1.26012 1.19096 1.72755 0.88329 0.87875 0.88587 0.88339 0.88102 0.87025 0.86553 0.91746 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.96 12.06 21.91 0.26 -40.69 15 2 C 0.03 1.38 5.50 85.43 0.47 1.85 15 3 Si 1.02 34.79 29.56 68.60 2.03 36.82 15 4 H -0.25 -8.08 7.11 99.48 0.71 -7.37 15 5 H -0.26 -8.24 7.11 99.48 0.71 -7.53 15 6 H -0.25 -8.23 7.11 99.48 0.71 -7.52 15 7 C -0.44 -23.40 9.48 23.32 0.22 -23.18 15 8 H 0.12 6.02 7.85 -2.91 -0.02 6.00 15 9 C 0.27 15.76 7.82 85.06 0.66 16.43 15 10 N -0.64 -35.19 11.61 -305.21 -3.54 -38.73 15 11 C 0.17 8.27 6.93 138.61 0.96 9.23 15 12 C 0.00 -0.11 5.11 29.85 0.15 0.04 15 13 C -0.07 -2.27 2.54 -10.08 -0.03 -2.29 15 14 H 0.06 2.31 8.14 -2.39 -0.02 2.29 15 15 C -0.12 -2.30 5.86 30.81 0.18 -2.12 15 16 C -0.05 -0.94 7.38 72.22 0.53 -0.40 15 17 S -0.36 -10.61 23.21 -56.49 -1.31 -11.92 15 18 C -0.04 -1.46 6.31 72.72 0.46 -1.01 15 19 N -0.49 -26.97 12.13 -56.60 -0.69 -27.65 15 20 O 0.01 0.44 9.74 64.22 0.63 1.07 15 21 H 0.31 13.76 8.29 -92.71 -0.77 12.99 15 22 H 0.10 3.14 8.14 -2.39 -0.02 3.12 15 23 H 0.10 2.91 8.11 -2.38 -0.02 2.89 15 24 H 0.10 1.55 7.80 -2.39 -0.02 1.53 15 25 H 0.10 1.66 8.14 -2.38 -0.02 1.64 15 26 H 0.11 1.68 8.14 -2.39 -0.02 1.66 15 27 H 0.12 1.81 8.14 -2.39 -0.02 1.79 15 28 H 0.06 2.69 8.14 -2.39 -0.02 2.67 15 29 H 0.09 3.09 8.08 -2.39 -0.02 3.07 15 Total: -1.00 -67.50 265.55 2.15 -65.35 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 1.16 Total: 17.22 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 3.62 Total: -1.46 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -3.97 Total: -107.08 kcal Atomic # 8 Polarization: 0.44 SS G_CDS: 0.63 Total: 1.07 kcal Atomic # 14 Polarization: 34.79 SS G_CDS: 2.03 Total: 36.82 kcal Atomic # 16 Polarization: -10.61 SS G_CDS: -1.31 Total: -11.92 kcal Total: -67.50 2.15 -65.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260913848.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.720 kcal (2) G-P(sol) polarization free energy of solvation -67.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds