Wall clock time and date at job start Mon Mar 30 2020 03:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86802 * 119.99756 * 2 1 4 4 H 1.48501 * 109.47347 * 274.97777 * 3 2 1 5 5 H 1.48503 * 109.47053 * 34.97649 * 3 2 1 6 6 H 1.48496 * 109.47129 * 154.97345 * 3 2 1 7 7 C 1.39966 * 120.00607 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00686 * 186.02146 * 7 2 1 9 9 C 1.41740 * 119.99511 * 6.02086 * 7 2 1 10 10 N 1.31866 * 126.59065 * 354.35466 * 9 7 2 11 11 O 1.21274 * 109.90233 * 180.02562 * 10 9 7 12 12 C 1.33800 * 110.33274 * 0.02562 * 11 10 9 13 13 C 1.50701 * 126.28454 * 179.97438 * 12 11 10 14 14 C 1.53007 * 109.46939 * 270.02349 * 13 12 11 15 15 H 1.09004 * 110.91284 * 57.15646 * 14 13 12 16 16 C 1.55138 * 110.85516 * 180.76284 * 14 13 12 17 17 C 1.53855 * 106.89900 * 160.29603 * 16 14 13 18 18 C 1.54278 * 108.92126 * 312.74481 * 17 16 14 19 19 S 1.83088 * 104.65412 * 27.95171 * 18 17 16 20 20 N 1.30743 * 107.42872 * 0.22497 * 12 11 10 21 21 H 0.96998 * 120.00314 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.46984 * 150.02513 * 13 12 11 23 23 H 1.09007 * 109.46914 * 30.02331 * 13 12 11 24 24 H 1.09001 * 109.97216 * 40.93163 * 16 14 13 25 25 H 1.08998 * 110.00806 * 279.67704 * 16 14 13 26 26 H 1.08999 * 109.60602 * 192.82849 * 17 16 14 27 27 H 1.08998 * 109.60680 * 72.66294 * 17 16 14 28 28 H 1.09001 * 110.40051 * 269.15596 * 18 17 16 29 29 H 1.08999 * 110.49899 * 146.79806 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3837 2.1073 -1.3948 5 1 1.4953 2.6201 0.8026 6 1 3.5875 1.4122 0.5923 7 6 2.0074 -1.2121 0.0005 8 1 3.0829 -1.2146 0.0986 9 6 1.3046 -2.4363 -0.1277 10 7 -0.0046 -2.5923 -0.1507 11 8 -0.2782 -3.7677 -0.2711 12 6 0.8392 -4.5006 -0.3385 13 6 0.9158 -5.9981 -0.4888 14 6 0.9329 -6.6494 0.8956 15 1 0.0554 -6.3588 1.4732 16 6 1.0308 -8.1933 0.7785 17 6 1.5377 -8.7134 2.1349 18 6 2.7476 -7.8639 2.5760 19 16 2.4756 -6.2302 1.7956 20 7 1.8523 -3.6795 -0.2446 21 1 -0.4850 0.8400 -0.0004 22 1 1.8262 -6.2632 -1.0263 23 1 0.0485 -6.3521 -1.0462 24 1 1.7334 -8.4630 -0.0099 25 1 0.0489 -8.6138 0.5618 26 1 1.8391 -9.7563 2.0372 27 1 0.7438 -8.6327 2.8774 28 1 3.6753 -8.3078 2.2150 29 1 2.7707 -7.7674 3.6615 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260960095.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:53 Heat of formation + Delta-G solvation = 18.941461 kcal Electronic energy + Delta-G solvation = -14733.141991 eV Core-core repulsion = 12169.828778 eV Total energy + Delta-G solvation = -2563.313213 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.24069 -37.57333 -36.41073 -35.26635 -33.86957 -31.19521 -28.67114 -27.70101 -24.64709 -23.84431 -22.37231 -21.64321 -19.22784 -18.17305 -17.81593 -17.50548 -16.65215 -16.36754 -15.73702 -15.03627 -14.97750 -14.52972 -13.82784 -13.36872 -13.24079 -13.19484 -13.00078 -12.63728 -12.41855 -12.26040 -12.12969 -11.94272 -11.89186 -11.65956 -11.17997 -11.07311 -10.59187 -10.13056 -8.66227 -8.65497 -6.78789 0.91068 1.01969 1.34015 1.34740 1.52919 1.60690 2.06669 2.19032 2.65824 3.20684 3.48778 3.72401 3.78405 4.00498 4.13460 4.22943 4.40562 4.55216 4.60105 4.68637 4.80099 4.92177 5.02602 5.05180 5.16935 5.25403 5.28717 5.81245 6.16943 6.47394 6.75955 8.33739 8.46597 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.047161 B = 0.005919 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.571268 B = 4729.414282 C = 5109.788303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.023 3.977 3 Si 1.009 2.991 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.255 1.255 7 C -0.473 4.473 8 H 0.088 0.912 9 C 0.258 3.742 10 N -0.463 5.463 11 O 0.006 5.994 12 C 0.133 3.867 13 C 0.006 3.994 14 C -0.024 4.024 15 H 0.090 0.910 16 C -0.111 4.111 17 C -0.122 4.122 18 C -0.069 4.069 19 S -0.367 6.367 20 N -0.528 5.528 21 H 0.286 0.714 22 H 0.114 0.886 23 H 0.140 0.860 24 H 0.093 0.907 25 H 0.117 0.883 26 H 0.113 0.887 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.404 -17.005 1.841 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.194 4.194 3 Si 0.827 3.173 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.179 1.179 7 C -0.514 4.514 8 H 0.106 0.894 9 C 0.006 3.994 10 N -0.193 5.193 11 O -0.034 6.034 12 C -0.090 4.090 13 C -0.034 4.034 14 C -0.153 4.153 15 H 0.109 0.891 16 C -0.150 4.150 17 C -0.161 4.161 18 C -0.217 4.217 19 S -0.142 6.142 20 N -0.267 5.267 21 H 0.096 0.904 22 H 0.132 0.868 23 H 0.158 0.842 24 H 0.112 0.888 25 H 0.135 0.865 26 H 0.131 0.869 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.653 -15.271 1.995 15.489 hybrid contribution -0.344 0.086 0.107 0.370 sum 1.309 -15.186 2.102 15.386 Atomic orbital electron populations 1.69979 1.09089 1.30294 1.34878 1.26980 0.95887 1.04907 0.91652 0.84816 0.78614 0.74290 0.79570 1.18272 1.18700 1.17856 1.18812 0.94881 0.87789 1.49888 0.89378 1.22940 0.86531 0.93161 0.96775 1.75521 1.16639 0.92550 1.34602 1.85082 1.35458 1.13937 1.68943 1.29113 0.82149 0.99594 0.98143 1.20163 1.07215 0.78832 0.97172 1.24062 0.95341 0.99987 0.95940 0.89119 1.22683 1.05023 0.88321 0.98984 1.22312 0.95909 1.01038 0.96799 1.24121 1.03026 0.91732 1.02814 1.89046 1.36584 1.23971 1.64587 1.72191 1.30551 1.00379 1.23583 0.90383 0.86784 0.84220 0.88807 0.86478 0.86909 0.90468 0.88030 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.59 12.01 21.82 0.26 -48.33 15 2 C 0.02 1.29 5.49 85.27 0.47 1.76 15 3 Si 1.01 42.19 29.56 68.60 2.03 44.22 15 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 15 5 H -0.26 -10.27 7.11 99.48 0.71 -9.57 15 6 H -0.26 -10.30 7.11 99.48 0.71 -9.59 15 7 C -0.47 -29.28 9.51 23.55 0.22 -29.06 15 8 H 0.09 5.26 7.85 -2.91 -0.02 5.24 15 9 C 0.26 16.25 7.70 134.75 1.04 17.29 15 10 N -0.46 -28.98 10.51 -60.20 -0.63 -29.61 15 11 O 0.01 0.31 11.28 73.43 0.83 1.14 15 12 C 0.13 6.16 7.26 88.33 0.64 6.80 15 13 C 0.01 0.18 5.43 29.85 0.16 0.34 15 14 C -0.02 -0.62 3.23 31.33 0.10 -0.52 15 15 H 0.09 2.55 8.14 -2.38 -0.02 2.53 15 16 C -0.11 -1.64 5.89 31.62 0.19 -1.46 15 17 C -0.12 -1.66 6.39 31.32 0.20 -1.46 15 18 C -0.07 -1.38 7.34 72.42 0.53 -0.85 15 19 S -0.37 -12.35 22.21 -56.49 -1.25 -13.60 15 20 N -0.53 -29.36 11.54 -304.62 -3.52 -32.88 15 21 H 0.29 15.30 8.29 -92.71 -0.77 14.53 15 22 H 0.11 3.15 8.14 -2.39 -0.02 3.13 15 23 H 0.14 2.92 8.14 -2.38 -0.02 2.90 15 24 H 0.09 1.23 8.08 -2.39 -0.02 1.21 15 25 H 0.12 1.10 8.14 -2.39 -0.02 1.08 15 26 H 0.11 0.90 8.14 -2.39 -0.02 0.88 15 27 H 0.08 1.02 8.14 -2.39 -0.02 1.01 15 28 H 0.10 1.77 8.14 -2.39 -0.02 1.75 15 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 15 Total: -1.00 -81.29 266.02 2.42 -78.87 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.15 Total: 7.35 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 3.55 Total: -7.16 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -3.89 Total: -110.82 kcal Atomic # 8 Polarization: 0.31 SS G_CDS: 0.83 Total: 1.14 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: -12.35 SS G_CDS: -1.25 Total: -13.60 kcal Total: -81.29 2.42 -78.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260960095.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.816 kcal (2) G-P(sol) polarization free energy of solvation -81.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds