Wall clock time and date at job start Mon Mar 30 2020 03:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30753 * 1 3 3 Si 1.86800 * 119.99938 * 2 1 4 4 H 1.48499 * 109.47341 * 270.00213 * 3 2 1 5 5 H 1.48507 * 109.47072 * 30.00292 * 3 2 1 6 6 H 1.48498 * 109.46832 * 150.00046 * 3 2 1 7 7 C 1.39969 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00278 * 179.97438 * 7 2 1 9 9 C 1.41741 * 120.00195 * 359.97438 * 7 2 1 10 10 N 1.31866 * 126.58282 * 0.02562 * 9 7 2 11 11 O 1.21274 * 109.89551 * 179.97438 * 10 9 7 12 12 C 1.33801 * 110.33992 * 359.97438 * 11 10 9 13 13 C 1.50695 * 126.29052 * 180.25975 * 12 11 10 14 14 C 1.52998 * 109.47466 * 269.69134 * 13 12 11 15 15 H 1.08997 * 110.35320 * 305.70204 * 14 13 12 16 16 C 1.54271 * 110.40152 * 183.37245 * 14 13 12 17 17 C 1.54014 * 108.84351 * 213.34461 * 16 14 13 18 18 C 1.55140 * 106.98231 * 47.10565 * 17 16 14 19 19 S 1.83101 * 110.40000 * 68.02290 * 14 13 12 20 20 N 1.30754 * 107.42150 * 359.97438 * 12 11 10 21 21 H 0.97005 * 119.99522 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46903 * 29.69366 * 13 12 11 23 23 H 1.08996 * 109.47254 * 149.68614 * 13 12 11 24 24 H 1.08993 * 109.61283 * 333.17778 * 16 14 13 25 25 H 1.09001 * 109.60535 * 93.33665 * 16 14 13 26 26 H 1.09009 * 109.89103 * 287.74769 * 17 16 14 27 27 H 1.08993 * 110.01372 * 166.53641 * 17 16 14 28 28 H 1.09003 * 110.85877 * 199.76008 * 18 17 16 29 29 H 1.09004 * 110.85704 * 76.11719 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0465 -1.4000 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4401 0.7000 7 6 2.0074 -1.2122 -0.0005 8 1 3.0873 -1.2122 -0.0010 9 6 1.2987 -2.4397 -0.0005 10 7 -0.0113 -2.5909 -0.0005 11 8 -0.2905 -3.7711 -0.0011 12 6 0.8233 -4.5125 -0.0020 13 6 0.8927 -6.0178 -0.0084 14 6 0.9210 -6.5332 1.4319 15 1 1.7318 -6.0619 1.9873 16 6 1.0770 -8.0679 1.4509 17 6 0.3086 -8.6311 2.6611 18 6 -1.0899 -7.9595 2.6622 19 16 -0.6841 -6.2176 2.2544 20 7 1.8405 -3.6909 -0.0026 21 1 -0.4850 0.8401 0.0004 22 1 0.0186 -6.4197 -0.5210 23 1 1.7966 -6.3377 -0.5266 24 1 0.6695 -8.4885 0.5317 25 1 2.1326 -8.3273 1.5323 26 1 0.8386 -8.3889 3.5823 27 1 0.2027 -9.7116 2.5657 28 1 -1.5534 -8.0298 3.6463 29 1 -1.7315 -8.3978 1.8977 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260960096.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:56 Heat of formation + Delta-G solvation = 43.344790 kcal Electronic energy + Delta-G solvation = -14732.163773 eV Core-core repulsion = 12169.908768 eV Total energy + Delta-G solvation = -2562.255005 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.12466 -36.67595 -34.30614 -33.48284 -32.19597 -29.48942 -26.75985 -26.28127 -23.50003 -21.70064 -20.86628 -20.48221 -17.25986 -16.66733 -16.10047 -15.62980 -15.37411 -14.74268 -14.23669 -13.77265 -13.51867 -13.08281 -12.80480 -12.34661 -11.64960 -11.61827 -11.29434 -11.26375 -11.08960 -10.92050 -10.76719 -10.32673 -10.13823 -10.01570 -9.62525 -9.18638 -8.97678 -8.01610 -7.46634 -6.55383 -4.55749 1.92876 2.53995 2.93922 3.08295 3.15077 3.20486 4.03370 4.11394 4.22870 4.56096 4.65121 4.81377 5.02164 5.11227 5.32731 5.36782 5.41036 5.50914 5.56050 5.66748 5.74062 5.88619 6.02458 6.19651 6.71746 7.04615 7.33300 7.83748 8.37104 8.60504 8.92685 10.40409 10.54420 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.056168 B = 0.005568 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.388668 B = 5027.144277 C = 5191.652379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.070 3.930 3 Si 0.923 3.077 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.436 4.436 8 H 0.090 0.910 9 C 0.287 3.713 10 N -0.421 5.421 11 O 0.031 5.969 12 C 0.113 3.887 13 C 0.002 3.998 14 C -0.039 4.039 15 H 0.106 0.894 16 C -0.125 4.125 17 C -0.126 4.126 18 C -0.086 4.086 19 S -0.262 6.262 20 N -0.520 5.520 21 H 0.277 0.723 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 -15.303 3.205 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.151 4.151 3 Si 0.747 3.253 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.477 4.477 8 H 0.108 0.892 9 C 0.035 3.965 10 N -0.148 5.148 11 O -0.012 6.012 12 C -0.109 4.109 13 C -0.038 4.038 14 C -0.168 4.168 15 H 0.124 0.876 16 C -0.163 4.163 17 C -0.165 4.165 18 C -0.235 4.235 19 S -0.036 6.036 20 N -0.262 5.262 21 H 0.087 0.913 22 H 0.112 0.888 23 H 0.119 0.881 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.663 -13.507 3.419 13.949 hybrid contribution 0.969 -0.269 -0.188 1.023 sum 0.306 -13.777 3.230 14.154 Atomic orbital electron populations 1.69886 1.07118 1.28571 1.34678 1.25831 0.94962 1.01032 0.93288 0.86080 0.80028 0.80145 0.79019 1.19519 1.20262 1.18597 1.18381 0.94104 0.86268 1.48957 0.89200 1.22430 0.86130 0.91545 0.96429 1.75591 1.16010 0.90595 1.32587 1.85241 1.34365 1.13672 1.67872 1.27714 0.84032 0.97019 1.02167 1.19884 1.04400 0.84549 0.95017 1.23821 0.97071 0.97765 0.98184 0.87601 1.22430 1.02113 0.92407 0.99397 1.22578 0.93965 1.00699 0.99253 1.24270 0.99639 0.94706 1.04867 1.88390 1.27238 1.11406 1.76525 1.72140 1.29532 1.01023 1.23526 0.91252 0.88843 0.88063 0.90288 0.89657 0.90440 0.90062 0.88351 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.69 11.98 55.55 0.67 -22.03 15 2 C 0.07 1.94 5.49 -17.36 -0.10 1.85 15 3 Si 0.92 20.31 29.56 -169.99 -5.02 15.28 15 4 H -0.27 -5.79 7.11 56.52 0.40 -5.38 15 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 6 H -0.26 -5.62 7.11 56.52 0.40 -5.21 15 7 C -0.44 -12.92 9.52 -37.60 -0.36 -13.28 15 8 H 0.09 2.53 7.85 -52.49 -0.41 2.11 15 9 C 0.29 8.67 7.70 -157.00 -1.21 7.47 15 10 N -0.42 -12.87 10.49 30.27 0.32 -12.56 15 11 O 0.03 0.82 11.28 17.71 0.20 1.02 15 12 C 0.11 2.62 7.28 -12.92 -0.09 2.53 15 13 C 0.00 0.04 5.23 -27.89 -0.15 -0.11 15 14 C -0.04 -0.55 3.24 -26.07 -0.08 -0.63 15 15 H 0.11 1.66 8.14 -51.93 -0.42 1.24 15 16 C -0.12 -1.18 5.95 -25.54 -0.15 -1.33 15 17 C -0.13 -1.08 6.46 -25.07 -0.16 -1.24 15 18 C -0.09 -0.89 7.38 38.29 0.28 -0.61 15 19 S -0.26 -4.20 22.28 -107.50 -2.39 -6.59 15 20 N -0.52 -13.96 11.62 -10.83 -0.13 -14.09 15 21 H 0.28 7.35 8.29 -40.82 -0.34 7.02 15 22 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 23 H 0.10 1.38 8.14 -51.93 -0.42 0.96 15 24 H 0.08 0.65 7.86 -51.93 -0.41 0.25 15 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 26 H 0.08 0.68 8.14 -51.92 -0.42 0.25 15 27 H 0.08 0.52 8.14 -51.93 -0.42 0.09 15 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 15 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 15 LS Contribution 265.91 15.07 4.01 4.01 Total: -1.00 -34.79 265.91 -7.71 -42.50 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -3.34 Total: -2.17 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.02 Total: -5.37 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 0.86 Total: -48.67 kcal Atomic # 8 Polarization: 0.82 SS G_CDS: 0.20 Total: 1.02 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: -4.20 SS G_CDS: -2.39 Total: -6.59 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.79 -7.71 -42.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260960096.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.845 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds