Wall clock time and date at job start Mon Mar 30 2020 04:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30759 * 1 3 3 Si 1.86803 * 119.99835 * 2 1 4 4 H 1.48498 * 109.47117 * 275.39324 * 3 2 1 5 5 H 1.48492 * 109.47257 * 35.39845 * 3 2 1 6 6 H 1.48508 * 109.46892 * 155.39695 * 3 2 1 7 7 C 1.40123 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00366 * 341.67440 * 7 2 1 9 9 C 1.40440 * 119.99924 * 161.67784 * 7 2 1 10 10 C 1.39883 * 120.52955 * 330.21252 * 9 7 2 11 11 C 1.41053 * 119.31983 * 180.02562 * 10 9 7 12 12 C 1.40672 * 120.07722 * 180.02562 * 11 10 9 13 13 C 1.36394 * 119.90616 * 180.02562 * 12 11 10 14 14 C 1.38899 * 120.51788 * 0.02735 * 13 12 11 15 15 C 1.37941 * 120.67145 * 359.94995 * 14 13 12 16 16 C 1.39028 * 120.04289 * 0.04450 * 15 14 13 17 17 N 1.38126 * 120.14608 * 179.97438 * 16 15 14 18 18 N 1.40259 * 133.64763 * 359.97438 * 17 16 15 19 19 N 1.29026 * 106.81703 * 180.02562 * 18 17 16 20 20 N 1.28544 * 110.63615 * 0.02562 * 19 18 17 21 21 C 1.31769 * 110.32654 * 359.97438 * 20 19 18 22 22 H 0.97002 * 119.99705 * 0.02562 * 1 2 3 23 23 H 1.08001 * 120.34601 * 0.02562 * 10 9 7 24 24 H 1.08000 * 120.04629 * 0.04828 * 12 11 10 25 25 H 1.07999 * 119.73528 * 179.97438 * 13 12 11 26 26 H 1.08001 * 119.65997 * 179.97438 * 14 13 12 27 27 H 1.08004 * 119.97788 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.3751 2.1123 -1.3939 5 1 1.5007 2.6170 0.8110 6 1 3.5915 1.4100 0.5829 7 6 2.0082 -1.2135 -0.0005 8 1 1.5093 -2.1253 0.2931 9 6 3.3592 -1.2442 -0.3829 10 6 3.8568 -0.3210 -1.3085 11 6 5.2179 -0.3754 -1.6748 12 6 5.7353 0.5455 -2.6038 13 6 7.0518 0.4894 -2.9558 14 6 7.8891 -0.4719 -2.4044 15 6 7.4057 -1.3857 -1.4911 16 6 6.0680 -1.3517 -1.1139 17 7 5.5816 -2.2661 -0.1999 18 7 6.1623 -3.3260 0.5119 19 7 5.2279 -3.8480 1.2324 20 7 4.1161 -3.2290 1.0503 21 6 4.2740 -2.2500 0.1826 22 1 -0.4850 0.8401 -0.0004 23 1 3.2057 0.4257 -1.7384 24 1 5.0911 1.2961 -3.0373 25 1 7.4461 1.1976 -3.6696 26 1 8.9293 -0.5039 -2.6933 27 1 8.0668 -2.1282 -1.0690 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261046202.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:44 Heat of formation + Delta-G solvation = 142.295636 kcal Electronic energy + Delta-G solvation = -16207.040910 eV Core-core repulsion = 13545.925536 eV Total energy + Delta-G solvation = -2661.115375 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.071 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -42.37342 -39.00710 -35.85478 -34.43364 -33.06544 -31.18186 -29.96950 -29.53650 -25.85938 -24.10903 -23.33259 -21.84987 -20.85597 -19.27050 -17.81293 -16.91486 -16.29381 -15.90840 -15.12166 -14.90126 -14.12868 -13.61280 -13.16567 -12.91524 -12.83904 -12.53039 -12.02222 -11.82658 -11.61791 -11.38531 -10.95628 -10.92173 -10.55957 -10.37478 -10.25843 -10.11076 -9.63462 -9.19021 -8.15258 -7.67110 -7.65982 -5.04639 0.99539 1.33704 2.27431 2.56646 2.67100 2.78271 2.87104 2.99683 3.38901 3.58220 4.17306 4.60998 4.71783 4.91882 5.27797 5.40122 5.48405 5.80865 5.86015 6.03747 6.12289 6.14201 6.37927 6.50100 6.67111 6.73460 6.92723 7.02438 7.13904 7.25014 7.53320 7.59179 7.75401 7.98786 9.19942 9.28792 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.020913 B = 0.012022 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.590144 B = 2328.464368 C = 3486.152549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.074 3.926 3 Si 0.926 3.074 4 H -0.258 1.258 5 H -0.283 1.283 6 H -0.238 1.238 7 C -0.338 4.338 8 H 0.115 0.885 9 C 0.106 3.894 10 C -0.330 4.330 11 C 0.048 3.952 12 C -0.153 4.153 13 C -0.089 4.089 14 C -0.181 4.181 15 C -0.071 4.071 16 C 0.035 3.965 17 N -0.286 5.286 18 N -0.125 5.125 19 N -0.055 5.055 20 N -0.320 5.320 21 C 0.258 3.742 22 H 0.303 0.697 23 H 0.129 0.871 24 H 0.124 0.876 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.542 5.383 -4.423 8.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.154 4.154 3 Si 0.750 3.250 4 H -0.183 1.183 5 H -0.209 1.209 6 H -0.161 1.161 7 C -0.363 4.363 8 H 0.133 0.867 9 C 0.098 3.902 10 C -0.354 4.354 11 C 0.044 3.956 12 C -0.172 4.172 13 C -0.108 4.108 14 C -0.201 4.201 15 C -0.092 4.092 16 C -0.065 4.065 17 N -0.069 5.069 18 N -0.108 5.108 19 N -0.048 5.048 20 N -0.177 5.177 21 C -0.008 4.008 22 H 0.114 0.886 23 H 0.146 0.854 24 H 0.142 0.858 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.720 4.167 -3.476 7.885 hybrid contribution 0.109 1.281 -0.558 1.401 sum 5.829 5.448 -4.034 8.940 Atomic orbital electron populations 1.69589 1.08483 1.32440 1.25914 1.26537 0.95160 1.02766 0.90889 0.85945 0.81336 0.77712 0.79993 1.18315 1.20946 1.16098 1.19753 0.91461 0.97167 1.27960 0.86721 1.17562 0.91418 0.88353 0.92910 1.20604 0.94433 1.10371 1.10040 1.17532 0.92770 0.91602 0.93649 1.20746 0.95697 1.00263 1.00486 1.20687 0.93738 0.97681 0.98676 1.20612 0.99594 0.98341 1.01535 1.20658 0.92510 0.98835 0.97165 1.17348 0.94885 0.95488 0.98742 1.48612 1.08839 1.21389 1.28065 1.82391 1.18448 0.99989 1.10019 1.77872 0.94317 1.18473 1.14164 1.74668 1.17334 1.07618 1.18067 1.24590 0.84752 0.97161 0.94269 0.88574 0.85398 0.85824 0.86617 0.86480 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -16.44 13.92 55.56 0.77 -15.67 15 2 C 0.07 1.63 5.41 -17.30 -0.09 1.53 15 3 Si 0.93 17.77 24.54 -169.99 -4.17 13.60 15 4 H -0.26 -4.65 6.72 56.52 0.38 -4.27 15 5 H -0.28 -5.17 7.11 56.52 0.40 -4.77 15 6 H -0.24 -4.87 6.87 56.52 0.39 -4.49 15 7 C -0.34 -7.98 9.59 -38.05 -0.36 -8.35 15 8 H 0.11 2.86 8.06 -52.49 -0.42 2.43 15 9 C 0.11 2.48 5.26 -104.79 -0.55 1.93 15 10 C -0.33 -7.14 6.96 -37.90 -0.26 -7.41 15 11 C 0.05 0.98 5.74 -106.83 -0.61 0.37 15 12 C -0.15 -2.60 9.72 -39.33 -0.38 -2.98 15 13 C -0.09 -1.33 9.97 -40.00 -0.40 -1.72 15 14 C -0.18 -2.78 10.02 -39.45 -0.40 -3.17 15 15 C -0.07 -1.29 9.85 -39.40 -0.39 -1.68 15 16 C 0.03 0.73 6.66 -83.66 -0.56 0.18 15 17 N -0.29 -6.64 3.97 -8.45 -0.03 -6.67 15 18 N -0.13 -2.89 13.86 60.35 0.84 -2.05 15 19 N -0.06 -1.31 13.37 60.35 0.81 -0.50 15 20 N -0.32 -7.91 12.22 32.28 0.39 -7.52 15 21 C 0.26 6.27 7.98 -154.85 -1.24 5.04 15 22 H 0.30 5.86 8.29 -40.82 -0.34 5.52 15 23 H 0.13 2.62 4.75 -52.49 -0.25 2.37 15 24 H 0.12 1.85 8.06 -52.49 -0.42 1.42 15 25 H 0.12 1.33 8.06 -52.49 -0.42 0.91 15 26 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 27 H 0.12 2.09 8.06 -52.48 -0.42 1.67 15 LS Contribution 243.05 15.07 3.66 3.66 Total: -1.00 -25.11 243.05 -4.51 -29.62 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -1.53 Total: 1.81 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -5.24 Total: -16.27 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 2.78 Total: -32.42 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -4.17 Total: 13.60 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -25.11 -4.51 -29.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046202.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.911 kcal (2) G-P(sol) polarization free energy of solvation -25.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds