Wall clock time and date at job start Mon Mar 30 2020 04:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30759 * 1 3 3 Si 1.86803 * 119.99835 * 2 1 4 4 H 1.48498 * 109.47117 * 275.39324 * 3 2 1 5 5 H 1.48492 * 109.47257 * 35.39845 * 3 2 1 6 6 H 1.48508 * 109.46892 * 155.39695 * 3 2 1 7 7 C 1.40123 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00366 * 341.67440 * 7 2 1 9 9 C 1.40440 * 119.99924 * 161.67784 * 7 2 1 10 10 C 1.39883 * 120.52955 * 330.21252 * 9 7 2 11 11 C 1.41053 * 119.31983 * 180.02562 * 10 9 7 12 12 C 1.40672 * 120.07722 * 180.02562 * 11 10 9 13 13 C 1.36394 * 119.90616 * 180.02562 * 12 11 10 14 14 C 1.38899 * 120.51788 * 0.02735 * 13 12 11 15 15 C 1.37941 * 120.67145 * 359.94995 * 14 13 12 16 16 C 1.39028 * 120.04289 * 0.04450 * 15 14 13 17 17 N 1.38126 * 120.14608 * 179.97438 * 16 15 14 18 18 N 1.40259 * 133.64763 * 359.97438 * 17 16 15 19 19 N 1.29026 * 106.81703 * 180.02562 * 18 17 16 20 20 N 1.28544 * 110.63615 * 0.02562 * 19 18 17 21 21 C 1.31769 * 110.32654 * 359.97438 * 20 19 18 22 22 H 0.97002 * 119.99705 * 0.02562 * 1 2 3 23 23 H 1.08001 * 120.34601 * 0.02562 * 10 9 7 24 24 H 1.08000 * 120.04629 * 0.04828 * 12 11 10 25 25 H 1.07999 * 119.73528 * 179.97438 * 13 12 11 26 26 H 1.08001 * 119.65997 * 179.97438 * 14 13 12 27 27 H 1.08004 * 119.97788 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.3751 2.1123 -1.3939 5 1 1.5007 2.6170 0.8110 6 1 3.5915 1.4100 0.5829 7 6 2.0082 -1.2135 -0.0005 8 1 1.5093 -2.1253 0.2931 9 6 3.3592 -1.2442 -0.3829 10 6 3.8568 -0.3210 -1.3085 11 6 5.2179 -0.3754 -1.6748 12 6 5.7353 0.5455 -2.6038 13 6 7.0518 0.4894 -2.9558 14 6 7.8891 -0.4719 -2.4044 15 6 7.4057 -1.3857 -1.4911 16 6 6.0680 -1.3517 -1.1139 17 7 5.5816 -2.2661 -0.1999 18 7 6.1623 -3.3260 0.5119 19 7 5.2279 -3.8480 1.2324 20 7 4.1161 -3.2290 1.0503 21 6 4.2740 -2.2500 0.1826 22 1 -0.4850 0.8401 -0.0004 23 1 3.2057 0.4257 -1.7384 24 1 5.0911 1.2961 -3.0373 25 1 7.4461 1.1976 -3.6696 26 1 8.9293 -0.5039 -2.6933 27 1 8.0668 -2.1282 -1.0690 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261046202.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:44 Heat of formation + Delta-G solvation = 127.449695 kcal Electronic energy + Delta-G solvation = -16207.684679 eV Core-core repulsion = 13545.925536 eV Total energy + Delta-G solvation = -2661.759143 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.15713 -40.54328 -37.44772 -36.06795 -34.71461 -32.85692 -31.58808 -31.04801 -27.46287 -25.75815 -25.05227 -23.42879 -22.42030 -20.87450 -19.43791 -18.59797 -17.87491 -17.67755 -16.56137 -16.43976 -15.57695 -15.12400 -14.73988 -14.51917 -14.47572 -14.08865 -13.68933 -13.45300 -13.19180 -12.94897 -12.50136 -12.41028 -12.19731 -11.98255 -11.88189 -11.77118 -11.22945 -10.74447 -9.60222 -9.29844 -9.24267 -6.73102 -0.64606 -0.25369 0.73989 0.86187 1.01355 1.22274 1.33083 1.47711 1.76201 2.06726 2.62978 2.90642 3.09926 3.23369 3.81317 3.95851 4.18935 4.28683 4.34136 4.49152 4.58021 4.68931 4.81765 5.02013 5.15745 5.23173 5.49829 5.52745 5.64504 5.66696 5.89567 6.02906 6.15719 6.29086 7.37828 7.78730 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.020913 B = 0.012022 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.590144 B = 2328.464368 C = 3486.152549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.052 3.948 3 Si 0.968 3.032 4 H -0.229 1.229 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.387 4.387 8 H 0.078 0.922 9 C 0.092 3.908 10 C -0.310 4.310 11 C 0.017 3.983 12 C -0.143 4.143 13 C -0.077 4.077 14 C -0.143 4.143 15 C -0.095 4.095 16 C 0.014 3.986 17 N -0.284 5.284 18 N -0.129 5.129 19 N -0.064 5.064 20 N -0.343 5.343 21 C 0.231 3.769 22 H 0.314 0.686 23 H 0.143 0.857 24 H 0.152 0.848 25 H 0.168 0.832 26 H 0.161 0.839 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.735 8.329 -7.238 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.171 4.171 3 Si 0.788 3.212 4 H -0.152 1.152 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.414 4.414 8 H 0.096 0.904 9 C 0.084 3.916 10 C -0.336 4.336 11 C 0.014 3.986 12 C -0.162 4.162 13 C -0.095 4.095 14 C -0.162 4.162 15 C -0.115 4.115 16 C -0.086 4.086 17 N -0.067 5.067 18 N -0.113 5.113 19 N -0.057 5.057 20 N -0.201 5.201 21 C -0.033 4.033 22 H 0.126 0.874 23 H 0.160 0.840 24 H 0.170 0.830 25 H 0.185 0.815 26 H 0.179 0.821 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.903 7.098 -6.294 13.010 hybrid contribution -0.429 0.433 0.066 0.613 sum 8.474 7.531 -6.228 12.935 Atomic orbital electron populations 1.69576 1.09285 1.33678 1.27930 1.27040 0.95622 1.04267 0.90196 0.85376 0.79147 0.75177 0.81487 1.15248 1.19394 1.18443 1.19496 0.92214 0.97004 1.32662 0.90416 1.17746 0.91234 0.89026 0.93549 1.20932 0.95449 1.09149 1.08020 1.17915 0.92357 0.92969 0.95361 1.21196 0.97329 0.99199 0.98513 1.21292 0.92465 0.97578 0.98150 1.21268 1.01680 0.95492 0.97766 1.20929 0.91262 1.00562 0.98786 1.18036 0.96620 0.95350 0.98547 1.48819 1.08443 1.21407 1.28032 1.82270 1.18250 1.00454 1.10314 1.77795 0.94326 1.18853 1.14722 1.74582 1.17941 1.08529 1.19088 1.24819 0.85578 0.97943 0.94970 0.87433 0.83997 0.83032 0.81456 0.82100 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.14 13.92 21.86 0.30 -35.84 15 2 C 0.05 2.39 5.41 85.31 0.46 2.85 15 3 Si 0.97 35.74 24.54 68.60 1.68 37.43 15 4 H -0.23 -7.31 6.72 99.48 0.67 -6.64 15 5 H -0.27 -9.19 7.11 99.48 0.71 -8.48 15 6 H -0.26 -10.46 6.87 99.48 0.68 -9.78 15 7 C -0.39 -19.66 9.59 23.26 0.22 -19.44 15 8 H 0.08 4.34 8.06 -2.91 -0.02 4.31 15 9 C 0.09 4.49 5.26 -19.97 -0.10 4.39 15 10 C -0.31 -13.15 6.96 23.36 0.16 -12.99 15 11 C 0.02 0.66 5.74 -21.30 -0.12 0.54 15 12 C -0.14 -4.06 9.72 22.43 0.22 -3.84 15 13 C -0.08 -1.69 9.97 22.00 0.22 -1.47 15 14 C -0.14 -3.39 10.02 22.36 0.22 -3.17 15 15 C -0.10 -3.10 9.85 22.39 0.22 -2.88 15 16 C 0.01 0.58 6.66 39.04 0.26 0.84 15 17 N -0.28 -13.38 3.97 -180.63 -0.72 -14.09 15 18 N -0.13 -6.10 13.86 37.02 0.51 -5.59 15 19 N -0.06 -3.18 13.37 37.02 0.49 -2.69 15 20 N -0.34 -18.01 12.22 -51.78 -0.63 -18.65 15 21 C 0.23 11.75 7.98 136.33 1.09 12.84 15 22 H 0.31 12.47 8.29 -92.71 -0.77 11.70 15 23 H 0.14 5.51 4.75 -2.91 -0.01 5.50 15 24 H 0.15 3.49 8.06 -2.91 -0.02 3.47 15 25 H 0.17 2.18 8.06 -2.91 -0.02 2.16 15 26 H 0.16 2.57 8.06 -2.91 -0.02 2.55 15 27 H 0.13 3.99 8.06 -2.91 -0.02 3.97 15 Total: -1.00 -58.65 243.05 5.65 -53.00 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.16 Total: 8.76 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 2.85 Total: -22.34 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -0.04 Total: -76.85 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 1.68 Total: 37.43 kcal Total: -58.65 5.65 -53.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046202.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.452 kcal (2) G-P(sol) polarization free energy of solvation -58.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds