Wall clock time and date at job start Mon Mar 30 2020 04:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99736 * 2 1 4 4 H 1.48497 * 109.47259 * 240.00039 * 3 2 1 5 5 H 1.48502 * 109.46880 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47191 * 119.99754 * 3 2 1 7 7 C 1.37873 * 120.00408 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00075 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99984 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47038 * 179.97438 * 9 7 2 11 11 C 1.34924 * 126.95497 * 89.97595 * 10 9 7 12 12 O 1.21543 * 123.81158 * 359.97126 * 11 10 9 13 13 N 1.33977 * 112.37714 * 180.23830 * 11 10 9 14 14 C 1.35151 * 111.56554 * 359.60747 * 13 11 10 15 15 O 1.21235 * 127.42329 * 180.11922 * 14 13 11 16 16 C 1.46108 * 126.95987 * 269.99996 * 10 9 7 17 17 C 1.53719 * 111.60319 * 59.27224 * 16 10 9 18 18 C 1.55235 * 101.81065 * 217.89884 * 17 16 10 19 19 O 1.44487 * 103.63678 * 36.13733 * 18 17 16 20 20 C 1.44071 * 107.02746 * 320.63658 * 19 18 17 21 21 H 0.96997 * 120.00634 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46932 * 59.99745 * 9 7 2 23 23 H 1.09002 * 109.46880 * 299.99709 * 9 7 2 24 24 H 0.96997 * 124.21794 * 179.73508 * 13 11 10 25 25 H 1.09002 * 110.96451 * 336.03273 * 17 16 10 26 26 H 1.09004 * 110.95239 * 99.76731 * 17 16 10 27 27 H 1.09004 * 110.58762 * 277.59903 * 18 17 16 28 28 H 1.09003 * 110.71898 * 154.73851 * 18 17 16 29 29 H 1.09002 * 109.97747 * 266.84234 * 20 19 18 30 30 H 1.09001 * 109.97481 * 145.55854 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.7307 -4.2288 1.0787 12 8 2.4713 -3.9239 2.2263 13 7 3.5772 -5.2110 0.7415 14 6 3.6801 -5.3394 -0.5999 15 8 4.3598 -6.1336 -1.2141 16 6 2.7741 -4.2803 -1.1669 17 6 3.5498 -3.2970 -2.0583 18 6 3.1953 -3.8094 -3.4801 19 8 1.8213 -4.2383 -3.3549 20 6 1.6947 -4.8793 -2.0708 21 1 -0.4851 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6242 -2.5567 0.8903 24 1 4.0551 -5.7625 1.3805 25 1 3.1964 -2.2762 -1.9123 26 1 4.6220 -3.3668 -1.8745 27 1 3.8350 -4.6479 -3.7558 28 1 3.2811 -3.0063 -4.2120 29 1 1.8491 -5.9533 -2.1739 30 1 0.7075 -4.6831 -1.6524 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261055061.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:13 Heat of formation + Delta-G solvation = -82.540685 kcal Electronic energy + Delta-G solvation = -18019.248432 eV Core-core repulsion = 15008.781752 eV Total energy + Delta-G solvation = -3010.466680 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -42.24382 -38.77061 -38.14953 -35.61718 -34.36670 -32.63791 -30.84807 -29.02108 -27.34801 -24.09836 -23.48689 -22.65114 -20.54437 -20.35645 -17.89423 -16.74950 -16.49126 -16.34804 -15.85591 -15.39677 -15.02759 -14.75422 -14.62056 -13.94836 -13.72212 -12.89237 -12.57330 -12.34762 -12.09695 -11.69103 -11.47573 -11.24368 -11.07275 -10.80434 -10.42556 -10.25760 -10.07929 -9.91354 -9.68336 -9.56840 -8.59124 -8.13361 -6.21284 -4.27779 1.77227 2.77682 3.23470 3.29034 3.29752 3.40797 3.50997 4.02101 4.27723 4.31879 4.64044 4.83222 5.12254 5.19247 5.37014 5.44448 5.76393 5.78828 5.87130 5.93473 6.24744 6.44735 6.87718 6.92997 7.07718 7.22623 7.56943 7.74273 7.83920 7.97959 8.61485 8.78954 9.38227 10.86535 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.009688 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.856254 B = 2889.591307 C = 3416.978364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.276 3.724 10 N -0.583 5.583 11 C 0.688 3.312 12 O -0.541 6.541 13 N -0.685 5.685 14 C 0.540 3.460 15 O -0.479 6.479 16 C 0.082 3.918 17 C -0.149 4.149 18 C 0.050 3.950 19 O -0.365 6.365 20 C 0.064 3.936 21 H 0.267 0.733 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.425 0.575 25 H 0.127 0.873 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.448 -7.990 -4.621 10.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.159 3.841 10 N -0.321 5.321 11 C 0.389 3.611 12 O -0.415 6.415 13 N -0.355 5.355 14 C 0.326 3.674 15 O -0.350 6.350 16 C -0.010 4.010 17 C -0.187 4.187 18 C -0.027 4.027 19 O -0.283 6.283 20 C -0.014 4.014 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.266 0.734 25 H 0.145 0.855 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.132 -7.884 -4.557 10.453 hybrid contribution 0.947 0.638 0.604 1.291 sum 6.079 -7.245 -3.953 10.251 Atomic orbital electron populations 1.69895 1.06004 1.27626 1.49094 1.24910 0.94904 0.99270 0.94583 0.86519 0.79538 0.82424 0.78765 1.20050 1.21044 1.20092 1.21349 0.93504 0.90249 1.52702 0.92036 1.19358 0.85627 0.79768 0.99312 1.48293 1.46474 1.35444 1.01858 1.16194 0.79341 0.79369 0.86182 1.90973 1.64333 1.67536 1.18632 1.44599 1.44924 1.36164 1.09830 1.20431 0.81109 0.83331 0.82549 1.90776 1.40514 1.38047 1.65665 1.21916 0.94852 0.93101 0.91106 1.23400 1.00204 1.02065 0.93028 1.23637 0.83098 0.99096 0.96875 1.88968 1.27785 1.77404 1.34123 1.23115 0.98907 0.96332 0.83056 0.92292 0.93371 0.93139 0.73425 0.85481 0.89951 0.91807 0.88240 0.91300 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.60 13.29 55.43 0.74 -23.86 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.54 -13.94 7.97 -34.44 -0.27 -14.21 16 8 H 0.06 1.58 7.51 -52.49 -0.39 1.18 16 9 C 0.28 6.56 5.39 -5.19 -0.03 6.54 16 10 N -0.58 -11.69 2.46 -167.30 -0.41 -12.10 16 11 C 0.69 13.66 8.70 -87.50 -0.76 12.89 16 12 O -0.54 -12.68 17.75 5.33 0.09 -12.59 16 13 N -0.69 -10.63 5.73 -15.93 -0.09 -10.72 16 14 C 0.54 8.49 7.18 -10.93 -0.08 8.42 16 15 O -0.48 -7.88 18.02 5.60 0.10 -7.78 16 16 C 0.08 1.37 1.03 -132.92 -0.14 1.23 16 17 C -0.15 -2.35 6.44 -25.17 -0.16 -2.52 16 18 C 0.05 0.69 7.74 38.34 0.30 0.99 16 19 O -0.36 -5.97 11.54 -35.23 -0.41 -6.38 16 20 C 0.06 1.00 6.98 37.16 0.26 1.26 16 21 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 22 H 0.05 1.16 7.56 -51.93 -0.39 0.77 16 23 H 0.05 1.33 8.05 -51.93 -0.42 0.92 16 24 H 0.42 5.29 8.96 -40.82 -0.37 4.93 16 25 H 0.13 2.35 6.01 -51.93 -0.31 2.04 16 26 H 0.08 1.18 7.85 -51.93 -0.41 0.77 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 0.95 7.74 -51.93 -0.40 0.55 16 30 H 0.10 1.66 7.39 -51.93 -0.38 1.27 16 LS Contribution 262.20 15.07 3.95 3.95 Total: -1.00 -29.97 262.20 -5.09 -35.06 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -3.06 Total: 2.63 kcal Atomic # 6 Polarization: 17.26 SS G_CDS: -0.98 Total: 16.27 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.23 Total: -46.68 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.21 Total: -26.75 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.97 -5.09 -35.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055061.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.480 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds