Wall clock time and date at job start Mon Mar 30 2020 04:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99736 * 2 1 4 4 H 1.48497 * 109.47259 * 240.00039 * 3 2 1 5 5 H 1.48502 * 109.46880 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47191 * 119.99754 * 3 2 1 7 7 C 1.37873 * 120.00408 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00075 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99984 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47038 * 179.97438 * 9 7 2 11 11 C 1.34924 * 126.95497 * 89.97595 * 10 9 7 12 12 O 1.21543 * 123.81158 * 359.97126 * 11 10 9 13 13 N 1.33977 * 112.37714 * 180.23830 * 11 10 9 14 14 C 1.35151 * 111.56554 * 359.60747 * 13 11 10 15 15 O 1.21235 * 127.42329 * 180.11922 * 14 13 11 16 16 C 1.46108 * 126.95987 * 269.99996 * 10 9 7 17 17 C 1.53719 * 111.60319 * 59.27224 * 16 10 9 18 18 C 1.55235 * 101.81065 * 217.89884 * 17 16 10 19 19 O 1.44487 * 103.63678 * 36.13733 * 18 17 16 20 20 C 1.44071 * 107.02746 * 320.63658 * 19 18 17 21 21 H 0.96997 * 120.00634 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46932 * 59.99745 * 9 7 2 23 23 H 1.09002 * 109.46880 * 299.99709 * 9 7 2 24 24 H 0.96997 * 124.21794 * 179.73508 * 13 11 10 25 25 H 1.09002 * 110.96451 * 336.03273 * 17 16 10 26 26 H 1.09004 * 110.95239 * 99.76731 * 17 16 10 27 27 H 1.09004 * 110.58762 * 277.59903 * 18 17 16 28 28 H 1.09003 * 110.71898 * 154.73851 * 18 17 16 29 29 H 1.09002 * 109.97747 * 266.84234 * 20 19 18 30 30 H 1.09001 * 109.97481 * 145.55854 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.7307 -4.2288 1.0787 12 8 2.4713 -3.9239 2.2263 13 7 3.5772 -5.2110 0.7415 14 6 3.6801 -5.3394 -0.5999 15 8 4.3598 -6.1336 -1.2141 16 6 2.7741 -4.2803 -1.1669 17 6 3.5498 -3.2970 -2.0583 18 6 3.1953 -3.8094 -3.4801 19 8 1.8213 -4.2383 -3.3549 20 6 1.6947 -4.8793 -2.0708 21 1 -0.4851 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6242 -2.5567 0.8903 24 1 4.0551 -5.7625 1.3805 25 1 3.1964 -2.2762 -1.9123 26 1 4.6220 -3.3668 -1.8745 27 1 3.8350 -4.6479 -3.7558 28 1 3.2811 -3.0063 -4.2120 29 1 1.8491 -5.9533 -2.1739 30 1 0.7075 -4.6831 -1.6524 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261055061.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:12 Heat of formation + Delta-G solvation = -105.378491 kcal Electronic energy + Delta-G solvation = -18020.238753 eV Core-core repulsion = 15008.781752 eV Total energy + Delta-G solvation = -3011.457001 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.68136 -40.16821 -39.50791 -37.20779 -36.01473 -34.46322 -32.25830 -30.42764 -29.08092 -25.67884 -25.14122 -23.86257 -22.13629 -21.77335 -19.31157 -18.66862 -17.84406 -17.77381 -17.28008 -16.91119 -16.63347 -16.21949 -16.03227 -15.48021 -15.32529 -14.42214 -14.18411 -13.79218 -13.58397 -13.24907 -13.02655 -12.93463 -12.62709 -12.38010 -12.18974 -11.88301 -11.75034 -11.50094 -11.24103 -10.80194 -10.62281 -9.82599 -8.23438 -6.36780 0.40222 1.30494 1.42841 1.44934 1.52358 1.93257 1.97039 2.40689 2.78012 2.91207 3.09303 3.34911 3.55125 3.98354 4.06608 4.23320 4.51265 4.54659 4.69668 4.81430 5.02467 5.06590 5.13363 5.18232 5.42994 5.69506 5.72529 5.97650 6.12829 6.31937 6.68770 7.10040 7.34240 8.83959 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.009688 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.856254 B = 2889.591307 C = 3416.978364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.962 3.038 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.294 3.706 10 N -0.590 5.590 11 C 0.691 3.309 12 O -0.582 6.582 13 N -0.665 5.665 14 C 0.556 3.444 15 O -0.474 6.474 16 C 0.075 3.925 17 C -0.149 4.149 18 C 0.053 3.947 19 O -0.382 6.382 20 C 0.066 3.934 21 H 0.269 0.731 22 H 0.041 0.959 23 H 0.017 0.983 24 H 0.441 0.559 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.049 -8.460 -5.721 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.787 3.213 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.176 3.824 10 N -0.327 5.327 11 C 0.392 3.608 12 O -0.459 6.459 13 N -0.337 5.337 14 C 0.342 3.658 15 O -0.345 6.345 16 C -0.016 4.016 17 C -0.187 4.187 18 C -0.023 4.023 19 O -0.301 6.301 20 C -0.012 4.012 21 H 0.078 0.922 22 H 0.059 0.941 23 H 0.035 0.965 24 H 0.285 0.715 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.135 0.865 29 H 0.110 0.890 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.777 -8.403 -5.687 12.202 hybrid contribution 0.459 0.723 0.923 1.259 sum 7.237 -7.680 -4.764 11.578 Atomic orbital electron populations 1.70005 1.07397 1.28448 1.50152 1.25715 0.95664 1.02600 0.94265 0.85547 0.78362 0.78413 0.79010 1.18501 1.20752 1.20326 1.21598 0.93558 0.91178 1.52128 0.92105 1.18811 0.85783 0.80589 0.97253 1.48035 1.46140 1.34936 1.03556 1.16243 0.79450 0.79753 0.85396 1.90944 1.65796 1.68916 1.20230 1.44254 1.43980 1.35149 1.10277 1.20063 0.80687 0.82863 0.82192 1.90800 1.40382 1.37878 1.65420 1.22181 0.95562 0.93570 0.90266 1.23371 1.00942 1.00209 0.94192 1.23810 0.82189 1.00411 0.95905 1.88951 1.29354 1.77673 1.34113 1.23130 0.98001 0.97421 0.82616 0.92221 0.94083 0.96543 0.71453 0.88278 0.88236 0.89617 0.86493 0.88977 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.80 13.29 21.45 0.28 -51.51 16 2 C 0.02 0.96 5.46 84.65 0.46 1.42 16 3 Si 0.96 41.91 29.54 68.60 2.03 43.94 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.55 -28.52 7.97 25.60 0.20 -28.32 16 8 H 0.06 3.12 7.51 -2.91 -0.02 3.10 16 9 C 0.29 14.37 5.39 85.63 0.46 14.83 16 10 N -0.59 -23.66 2.46 -801.42 -1.97 -25.63 16 11 C 0.69 27.16 8.70 179.26 1.56 28.72 16 12 O -0.58 -27.60 17.75 -3.85 -0.07 -27.67 16 13 N -0.67 -19.43 5.73 -441.24 -2.53 -21.96 16 14 C 0.56 16.05 7.18 87.52 0.63 16.68 16 15 O -0.47 -13.93 18.02 -2.89 -0.05 -13.98 16 16 C 0.07 2.39 1.03 3.10 0.00 2.39 16 17 C -0.15 -4.44 6.44 31.60 0.20 -4.23 16 18 C 0.05 1.33 7.74 72.75 0.56 1.90 16 19 O -0.38 -11.81 11.54 -148.98 -1.72 -13.53 16 20 C 0.07 1.97 6.98 71.98 0.50 2.47 16 21 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 22 H 0.04 2.05 7.56 -2.39 -0.02 2.03 16 23 H 0.02 0.91 8.05 -2.39 -0.02 0.90 16 24 H 0.44 10.03 8.96 -92.71 -0.83 9.20 16 25 H 0.10 3.59 6.01 -2.39 -0.01 3.58 16 26 H 0.10 2.59 7.85 -2.38 -0.02 2.57 16 27 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.09 2.30 7.74 -2.39 -0.02 2.28 16 30 H 0.09 2.98 7.39 -2.39 -0.02 2.96 16 Total: -1.00 -63.68 262.20 0.91 -62.77 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.35 Total: 11.71 kcal Atomic # 6 Polarization: 31.27 SS G_CDS: 4.59 Total: 35.86 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -4.22 Total: -99.10 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: -1.84 Total: -55.18 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -63.68 0.91 -62.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055061.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.604 kcal (2) G-P(sol) polarization free energy of solvation -63.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds