Wall clock time and date at job start Mon Mar 30 2020 04:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46973 * 2 1 4 4 C 1.50704 * 109.47123 * 120.00489 * 2 1 3 5 5 H 1.07991 * 119.99955 * 114.37496 * 4 2 1 6 6 C 1.37887 * 119.99505 * 294.36633 * 4 2 1 7 7 N 1.31511 * 119.99357 * 156.95807 * 6 4 2 8 8 Si 1.86790 * 120.00283 * 337.23704 * 6 4 2 9 9 H 1.48497 * 109.47333 * 179.71998 * 8 6 4 10 10 H 1.48500 * 109.47321 * 299.72241 * 8 6 4 11 11 H 1.48505 * 109.47271 * 59.72625 * 8 6 4 12 12 N 1.46501 * 109.46917 * 240.00211 * 2 1 3 13 13 C 1.46978 * 121.14310 * 120.00155 * 12 2 1 14 14 C 1.50287 * 109.50066 * 251.72029 * 13 12 2 15 15 O 1.21220 * 118.64776 * 116.65685 * 14 13 12 16 16 N 1.33396 * 122.70623 * 296.67905 * 14 13 12 17 17 C 1.33501 * 127.21153 * 11.51202 * 16 14 13 18 18 O 1.21230 * 118.86346 * 168.18253 * 17 16 14 19 19 C 1.50444 * 122.27801 * 348.19881 * 17 16 14 20 20 C 1.34793 * 121.14432 * 299.72028 * 12 2 1 21 21 O 1.21281 * 121.18140 * 359.49705 * 20 12 2 22 22 H 1.09000 * 109.47141 * 53.57959 * 1 2 3 23 23 H 1.08997 * 109.46895 * 173.58271 * 1 2 3 24 24 H 1.08996 * 109.46891 * 293.57972 * 1 2 3 25 25 H 0.96999 * 120.00552 * 355.20462 * 7 6 4 26 26 H 1.09005 * 109.46641 * 11.72632 * 13 12 2 27 27 H 1.09000 * 109.46949 * 131.70798 * 13 12 2 28 28 H 0.96997 * 116.39743 * 191.53130 * 16 14 13 29 29 H 1.08999 * 109.53182 * 182.17123 * 19 17 16 30 30 H 1.09003 * 109.52773 * 302.38291 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5763 -1.6385 1.1339 6 6 1.7977 -0.1756 2.4795 7 7 1.8093 -0.9528 3.5403 8 14 1.4555 1.6514 2.6638 9 1 1.2310 1.9709 4.0966 10 1 2.6180 2.4261 2.1602 11 1 0.2453 2.0099 1.8814 12 7 2.0183 -0.6906 -1.1962 13 6 2.8647 -0.0006 -2.1800 14 6 2.0737 0.2525 -3.4325 15 8 1.8675 1.3990 -3.7679 16 7 1.5889 -0.7325 -4.1902 17 6 1.5246 -2.0302 -3.8835 18 8 0.8631 -2.7652 -4.5848 19 6 2.2444 -2.6120 -2.6974 20 6 1.7115 -1.9822 -1.4296 21 8 1.0292 -2.6158 -0.6525 22 1 -0.3633 0.6101 -0.8269 23 1 -0.3633 -1.0212 -0.1149 24 1 -0.3633 0.4111 0.9418 25 1 1.9136 -1.9118 3.4379 26 1 3.2028 0.9493 -1.7657 27 1 3.7287 -0.6221 -2.4153 28 1 1.2451 -0.4777 -5.0607 29 1 2.0813 -3.6892 -2.6646 30 1 3.3115 -2.4065 -2.7821 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261059360.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:19 Heat of formation + Delta-G solvation = -118.599022 kcal Electronic energy + Delta-G solvation = -17904.865312 eV Core-core repulsion = 14892.835025 eV Total energy + Delta-G solvation = -3012.030287 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.83237 -40.47798 -40.20538 -37.12201 -36.12448 -34.99672 -32.97084 -31.02959 -28.62758 -26.84629 -25.09240 -23.40279 -21.57318 -20.66083 -19.68265 -19.13153 -18.40730 -17.88217 -17.13748 -16.55609 -16.27307 -15.83406 -15.74189 -15.39272 -14.90811 -14.74188 -14.46398 -13.92986 -13.71603 -13.41819 -13.31723 -13.16203 -12.38122 -12.20331 -12.06051 -11.69006 -11.59543 -11.48530 -11.22027 -10.75935 -10.38915 -9.77180 -8.69402 -6.30028 0.14665 1.29695 1.50191 1.51922 1.57189 1.64501 1.73163 2.07146 2.54173 2.93239 3.02467 3.17814 3.57683 3.87284 3.93957 4.38963 4.44262 4.57163 4.62262 4.71510 4.83069 4.88591 5.36367 5.50730 5.68909 5.82387 6.07180 6.09902 6.37629 6.58462 6.62246 7.10702 7.45127 8.63615 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.032715 B = 0.008895 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.666321 B = 3147.026651 C = 3661.543979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.251 3.749 3 H 0.067 0.933 4 C -0.596 4.596 5 H 0.020 0.980 6 C -0.016 4.016 7 N -0.931 5.931 8 Si 1.072 2.928 9 H -0.293 1.293 10 H -0.246 1.246 11 H -0.251 1.251 12 N -0.595 5.595 13 C 0.081 3.919 14 C 0.527 3.473 15 O -0.515 6.515 16 N -0.666 5.666 17 C 0.553 3.447 18 O -0.519 6.519 19 C -0.159 4.159 20 C 0.505 3.495 21 O -0.551 6.551 22 H 0.046 0.954 23 H 0.038 0.962 24 H 0.053 0.947 25 H 0.251 0.749 26 H 0.145 0.855 27 H 0.153 0.847 28 H 0.417 0.583 29 H 0.143 0.857 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.091 3.638 -15.737 16.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.149 3.851 3 H 0.084 0.916 4 C -0.634 4.634 5 H 0.038 0.962 6 C -0.215 4.215 7 N -0.565 5.565 8 Si 0.892 3.108 9 H -0.219 1.219 10 H -0.170 1.170 11 H -0.176 1.176 12 N -0.329 5.329 13 C -0.044 4.044 14 C 0.315 3.685 15 O -0.387 6.387 16 N -0.331 5.331 17 C 0.342 3.658 18 O -0.393 6.393 19 C -0.202 4.202 20 C 0.291 3.709 21 O -0.427 6.427 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.163 0.837 27 H 0.170 0.830 28 H 0.257 0.743 29 H 0.161 0.839 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.089 4.652 -14.486 15.755 hybrid contribution -0.048 -1.754 -0.992 2.015 sum 4.041 2.899 -15.477 16.257 Atomic orbital electron populations 1.22413 0.98569 1.00570 1.00375 1.19053 0.90836 0.93195 0.81981 0.91590 1.22125 1.39588 1.09148 0.92545 0.96157 1.27131 0.92963 1.09576 0.91834 1.70959 1.46834 1.05575 1.33157 0.83753 0.79443 0.70960 0.76671 1.21930 1.16998 1.17571 1.48331 1.50790 1.10842 1.22943 1.22332 0.93545 1.04152 0.84353 1.21425 0.77712 0.83989 0.85406 1.90803 1.54723 1.21511 1.71670 1.44416 1.58115 1.08099 1.22430 1.20090 0.79150 0.81007 0.85523 1.90814 1.38111 1.58459 1.51939 1.22410 1.05156 1.04654 0.87933 1.20793 0.80631 0.82015 0.87416 1.90756 1.38925 1.63069 1.49951 0.93462 0.94294 0.92804 0.94054 0.83704 0.82961 0.74343 0.83869 0.80621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.03 8.95 71.98 0.64 -6.39 16 2 C 0.25 10.72 2.31 44.25 0.10 10.82 16 3 H 0.07 2.53 6.26 -2.39 -0.01 2.51 16 4 C -0.60 -32.06 8.00 25.60 0.20 -31.85 16 5 H 0.02 1.23 7.54 -2.92 -0.02 1.21 16 6 C -0.02 -0.88 5.21 84.66 0.44 -0.44 16 7 N -0.93 -57.77 13.70 21.45 0.29 -57.48 16 8 Si 1.07 46.33 26.44 68.60 1.81 48.14 16 9 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 10 H -0.25 -9.23 7.11 99.48 0.71 -8.53 16 11 H -0.25 -9.80 6.11 99.48 0.61 -9.19 16 12 N -0.60 -20.03 2.51 -805.05 -2.02 -22.05 16 13 C 0.08 1.70 5.82 85.41 0.50 2.19 16 14 C 0.53 11.49 7.53 87.74 0.66 12.15 16 15 O -0.52 -13.99 17.76 -2.85 -0.05 -14.04 16 16 N -0.67 -13.27 4.90 -430.82 -2.11 -15.38 16 17 C 0.55 12.70 7.33 87.77 0.64 13.34 16 18 O -0.52 -15.09 17.79 -2.87 -0.05 -15.14 16 19 C -0.16 -3.49 5.49 29.20 0.16 -3.33 16 20 C 0.50 17.92 6.34 87.83 0.56 18.48 16 21 O -0.55 -26.46 14.55 -3.03 -0.04 -26.51 16 22 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 23 H 0.04 1.88 6.19 -2.39 -0.01 1.87 16 24 H 0.05 2.42 5.43 -2.39 -0.01 2.41 16 25 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 26 H 0.15 2.75 7.66 -2.38 -0.02 2.73 16 27 H 0.15 1.71 6.59 -2.39 -0.02 1.70 16 28 H 0.42 7.25 8.60 -92.71 -0.80 6.45 16 29 H 0.14 3.09 8.10 -2.39 -0.02 3.07 16 30 H 0.18 2.01 6.64 -2.39 -0.02 2.00 16 Total: -1.00 -78.66 254.79 2.00 -76.66 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.26 Total: 10.84 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 3.91 Total: 14.97 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -3.84 Total: -94.91 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -0.15 Total: -55.69 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.81 Total: 48.14 kcal Total: -78.66 2.00 -76.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261059360.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.938 kcal (2) G-P(sol) polarization free energy of solvation -78.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds