Wall clock time and date at job start Mon Mar 30 2020 04:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30565 * 1 3 3 Si 1.86803 * 119.99859 * 2 1 4 4 H 1.48500 * 109.46917 * 239.99600 * 3 2 1 5 5 H 1.48505 * 109.46905 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46973 * 119.99562 * 3 2 1 7 7 C 1.40356 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99973 * 180.02562 * 7 2 1 9 9 C 1.40403 * 120.00073 * 0.02562 * 7 2 1 10 10 N 1.33119 * 120.21409 * 359.97438 * 9 7 2 11 11 C 1.33998 * 121.18924 * 179.97438 * 10 9 7 12 12 C 1.40872 * 119.72514 * 179.97438 * 11 10 9 13 13 C 1.36316 * 119.99891 * 179.97438 * 12 11 10 14 14 C 1.38950 * 120.67098 * 0.02562 * 13 12 11 15 15 C 1.38054 * 120.52127 * 0.02562 * 14 13 12 16 16 C 1.38793 * 119.95342 * 0.02562 * 15 14 13 17 17 N 1.38692 * 120.22404 * 179.71646 * 16 15 14 18 18 N 1.28488 * 133.69903 * 0.27578 * 17 16 15 19 19 N 1.28665 * 110.65487 * 179.97438 * 18 17 16 20 20 C 1.33468 * 109.49125 * 359.30174 * 19 18 17 21 21 C 1.36378 * 106.16553 * 0.59469 * 20 19 18 22 22 H 0.97002 * 120.00220 * 0.02562 * 1 2 3 23 23 H 1.08004 * 120.00447 * 359.95950 * 12 11 10 24 24 H 1.08001 * 119.67024 * 180.02562 * 13 12 11 25 25 H 1.07999 * 119.73980 * 180.02562 * 14 13 12 26 26 H 1.08004 * 120.02297 * 180.02562 * 15 14 13 27 27 H 1.08001 * 126.91582 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2396 1.6178 0.0000 4 1 3.0934 1.6964 -1.2125 5 1 1.2745 2.7465 -0.0006 6 1 3.0933 1.6965 1.2126 7 6 2.0074 -1.2155 0.0005 8 1 3.0874 -1.2155 0.0010 9 6 1.3055 -2.4315 0.0005 10 7 -0.0257 -2.4365 0.0005 11 6 -0.7153 -3.5854 0.0000 12 6 -2.1237 -3.5547 0.0006 13 6 -2.8309 -4.7201 -0.0005 14 6 -2.1768 -5.9460 -0.0015 15 6 -0.7975 -6.0048 -0.0011 16 6 -0.0539 -4.8328 0.0011 17 7 1.3320 -4.8853 0.0075 18 7 2.1839 -5.8472 0.0080 19 7 3.3860 -5.3887 0.0149 20 6 3.3539 -4.0545 0.0040 21 6 2.0353 -3.7064 0.0032 22 1 -0.4850 0.8400 -0.0004 23 1 -2.6433 -2.6078 0.0021 24 1 -3.9105 -4.6903 -0.0004 25 1 -2.7520 -6.8601 -0.0028 26 1 -0.2974 -6.9621 -0.0023 27 1 4.2015 -3.3851 0.0057 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261061002.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:03 Heat of formation + Delta-G solvation = 122.364802 kcal Electronic energy + Delta-G solvation = -16187.285291 eV Core-core repulsion = 13525.305651 eV Total energy + Delta-G solvation = -2661.979640 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.071 amu Computer time = -1.16 seconds Orbital eigenvalues (eV) -44.42430 -40.28992 -37.60893 -35.67102 -34.75739 -32.45501 -30.99817 -30.60686 -28.31611 -25.19430 -24.67679 -23.77864 -22.01674 -20.59833 -19.57499 -18.50853 -17.60260 -17.36572 -16.78241 -16.15896 -15.79984 -15.00278 -14.75974 -14.50774 -14.37902 -13.54938 -13.28349 -13.09543 -12.74498 -12.62272 -12.43057 -12.34347 -12.01811 -11.99972 -11.95094 -11.10979 -10.55892 -9.89937 -9.58567 -9.03733 -8.62509 -6.86240 -0.18669 0.01916 1.02668 1.40828 1.46940 1.48214 1.50898 1.60600 2.15427 2.15563 2.86084 3.34815 3.56227 3.68809 3.80028 4.01883 4.18967 4.30128 4.36116 4.64981 4.68761 4.84324 4.90499 5.15722 5.27689 5.40743 5.50948 5.69597 5.84388 5.90047 6.16604 6.22895 6.47518 7.45827 7.88856 8.10595 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.023772 B = 0.009949 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.586124 B = 2813.578391 C = 3981.318044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.011 3.989 3 Si 1.005 2.995 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.351 4.351 8 H 0.126 0.874 9 C 0.242 3.758 10 N -0.569 5.569 11 C 0.181 3.819 12 C -0.159 4.159 13 C -0.062 4.062 14 C -0.182 4.182 15 C -0.074 4.074 16 C -0.081 4.081 17 N -0.198 5.198 18 N -0.137 5.137 19 N -0.297 5.297 20 C -0.019 4.019 21 C -0.063 4.063 22 H 0.296 0.704 23 H 0.129 0.871 24 H 0.162 0.838 25 H 0.158 0.842 26 H 0.122 0.878 27 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.963 1.896 -0.021 2.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.318 5.318 2 C -0.217 4.217 3 Si 0.823 3.177 4 H -0.174 1.174 5 H -0.191 1.191 6 H -0.174 1.174 7 C -0.383 4.383 8 H 0.144 0.856 9 C 0.107 3.893 10 N -0.291 5.291 11 C 0.052 3.948 12 C -0.180 4.180 13 C -0.082 4.082 14 C -0.202 4.202 15 C -0.094 4.094 16 C -0.182 4.182 17 N 0.018 4.982 18 N -0.113 5.113 19 N -0.157 5.157 20 C -0.183 4.183 21 C -0.195 4.195 22 H 0.108 0.892 23 H 0.147 0.853 24 H 0.179 0.821 25 H 0.175 0.825 26 H 0.140 0.860 27 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.347 1.018 -0.007 2.558 hybrid contribution 0.590 0.664 -0.004 0.888 sum -1.757 1.683 -0.011 2.433 Atomic orbital electron populations 1.70116 1.09621 1.31293 1.20736 1.27357 0.95918 1.05113 0.93345 0.84882 0.78527 0.73448 0.80891 1.17432 1.19078 1.17426 1.20404 0.96723 0.88790 1.32386 0.85646 1.19789 0.88599 0.88452 0.92430 1.69708 1.05120 1.22323 1.31981 1.19601 0.96140 0.86373 0.92692 1.20695 0.89782 0.99780 1.07784 1.21118 1.01231 0.91002 0.94832 1.21062 0.91915 0.99251 1.08011 1.20807 0.95402 0.94922 0.98255 1.18902 0.77162 0.98379 1.23786 1.44668 1.07206 1.05645 1.40727 1.77977 0.93186 1.14702 1.25446 1.74742 1.11909 1.10578 1.18427 1.23715 0.95669 0.92218 1.06654 1.23218 0.93939 0.90580 1.11781 0.89240 0.85350 0.82068 0.82489 0.85965 0.75481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -32.27 11.48 21.89 0.25 -32.02 15 2 C 0.01 0.46 5.50 85.40 0.47 0.93 15 3 Si 1.01 30.28 29.56 68.60 2.03 32.31 15 4 H -0.25 -7.23 7.11 99.48 0.71 -6.52 15 5 H -0.27 -7.77 7.11 99.48 0.71 -7.06 15 6 H -0.25 -7.23 7.11 99.48 0.71 -6.52 15 7 C -0.35 -15.91 9.11 23.31 0.21 -15.70 15 8 H 0.13 4.82 7.75 -2.91 -0.02 4.79 15 9 C 0.24 12.42 6.71 41.75 0.28 12.70 15 10 N -0.57 -30.41 7.87 -178.22 -1.40 -31.82 15 11 C 0.18 8.99 6.59 40.18 0.26 9.26 15 12 C -0.16 -6.54 9.95 22.47 0.22 -6.32 15 13 C -0.06 -2.01 9.96 21.99 0.22 -1.79 15 14 C -0.18 -5.91 10.04 22.40 0.22 -5.68 15 15 C -0.07 -2.98 9.80 22.36 0.22 -2.76 15 16 C -0.08 -3.92 6.64 38.92 0.26 -3.66 15 17 N -0.20 -10.03 3.70 -176.75 -0.65 -10.69 15 18 N -0.14 -6.75 13.08 37.02 0.48 -6.26 15 19 N -0.30 -13.81 12.36 -57.80 -0.71 -14.52 15 20 C -0.02 -0.84 11.91 84.01 1.00 0.16 15 21 C -0.06 -3.14 6.85 40.13 0.27 -2.86 15 22 H 0.30 12.03 8.29 -92.71 -0.77 11.26 15 23 H 0.13 5.14 8.06 -2.91 -0.02 5.12 15 24 H 0.16 3.69 8.06 -2.91 -0.02 3.67 15 25 H 0.16 3.76 8.06 -2.91 -0.02 3.73 15 26 H 0.12 4.70 8.02 -2.91 -0.02 4.68 15 27 H 0.23 7.50 8.06 -2.91 -0.02 7.48 15 Total: -1.00 -62.96 248.71 4.85 -58.11 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 1.21 Total: 20.62 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 3.65 Total: -15.73 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -2.04 Total: -95.31 kcal Atomic # 14 Polarization: 30.28 SS G_CDS: 2.03 Total: 32.31 kcal Total: -62.96 4.85 -58.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261061002.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.471 kcal (2) G-P(sol) polarization free energy of solvation -62.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.16 seconds