Wall clock time and date at job start Mon Mar 30 2020 04:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47011 * 2 1 4 4 C 1.50699 * 109.47370 * 119.99501 * 2 1 3 5 5 H 1.08000 * 119.99676 * 119.99992 * 4 2 1 6 6 C 1.37872 * 120.00264 * 300.01236 * 4 2 1 7 7 N 1.31513 * 119.99972 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99958 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47481 * 89.99539 * 8 6 4 10 10 H 1.48505 * 109.46742 * 209.99384 * 8 6 4 11 11 H 1.48492 * 109.47150 * 329.98987 * 8 6 4 12 12 N 1.46495 * 109.47644 * 240.00234 * 2 1 3 13 13 C 1.33393 * 116.39271 * 299.97695 * 12 2 1 14 14 O 1.21227 * 118.64293 * 348.51458 * 13 12 2 15 15 C 1.50284 * 122.70981 * 168.48957 * 13 12 2 16 16 N 1.46940 * 109.71768 * 63.25038 * 15 13 12 17 17 C 1.34792 * 117.73021 * 288.71491 * 16 15 13 18 18 O 1.21283 * 121.18676 * 180.22906 * 17 16 15 19 19 C 1.51249 * 117.63474 * 359.95365 * 17 16 15 20 20 C 1.33506 * 116.39951 * 119.99535 * 12 2 1 21 21 O 1.21226 * 118.86059 * 11.81427 * 20 12 2 22 22 H 1.08997 * 109.47275 * 299.99565 * 1 2 3 23 23 H 1.08994 * 109.47440 * 60.00439 * 1 2 3 24 24 H 1.09002 * 109.46521 * 179.97438 * 1 2 3 25 25 H 0.97004 * 120.00004 * 180.02562 * 7 6 4 26 26 H 1.09006 * 109.46965 * 183.33227 * 15 13 12 27 27 H 1.08998 * 109.47197 * 303.31326 * 15 13 12 28 28 H 0.97003 * 121.13048 * 108.48976 * 16 15 13 29 29 H 1.08998 * 109.52972 * 191.10652 * 19 17 16 30 30 H 1.09004 * 109.52842 * 311.24283 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9433 0.8301 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.6296 -0.5457 4.4124 10 1 1.3430 -0.9492 5.1120 11 1 2.4859 -2.5661 3.7120 12 7 2.0184 -0.6905 -1.1961 13 6 1.6533 -1.9659 -1.3352 14 8 1.1375 -2.5287 -0.3934 15 6 1.8544 -2.7338 -2.6113 16 7 3.2905 -2.8456 -2.9015 17 6 3.9397 -1.7315 -3.2943 18 8 5.1242 -1.7533 -3.5538 19 6 3.1370 -0.4545 -3.4061 20 6 2.7800 0.0263 -2.0260 21 8 3.1986 1.1015 -1.6543 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 0.7091 1.1616 3.4844 26 1 1.4272 -3.7311 -2.5064 27 1 1.3609 -2.2118 -3.4311 28 1 3.7562 -3.6916 -2.8102 29 1 3.7303 0.3055 -3.9144 30 1 2.2260 -0.6452 -3.9735 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261086037.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:23 Heat of formation + Delta-G solvation = -83.374557 kcal Electronic energy + Delta-G solvation = -18028.966776 eV Core-core repulsion = 15018.463937 eV Total energy + Delta-G solvation = -3010.502839 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.45062 -39.19978 -38.38713 -35.45757 -34.82118 -32.91168 -30.76929 -29.30338 -27.50050 -25.23021 -23.46050 -21.75686 -20.78124 -18.77367 -17.71627 -17.35689 -16.81876 -16.35514 -15.70316 -14.91961 -14.56781 -14.37210 -14.11077 -14.06190 -13.42475 -12.88374 -12.72914 -12.67801 -12.16444 -11.61154 -11.34569 -10.96349 -10.85791 -10.56067 -10.25697 -10.24244 -10.04700 -9.65953 -9.39701 -8.93412 -8.52074 -8.34332 -6.05138 -4.07706 1.78106 2.35476 3.03639 3.19348 3.32245 3.33749 3.37620 3.44173 4.20570 4.24729 4.44283 4.70504 4.86430 4.89173 5.28552 5.33080 5.55426 6.31078 6.49494 6.65284 6.79790 6.87422 6.89511 7.31474 7.60365 7.79997 7.91331 7.96393 8.12007 8.30129 8.39682 8.88232 9.54084 11.01949 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.030058 B = 0.008727 C = 0.008456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.319072 B = 3207.592304 C = 3310.336931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.236 3.764 3 H 0.075 0.925 4 C -0.500 4.500 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.902 3.098 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.552 5.552 13 C 0.493 3.507 14 O -0.449 6.449 15 C 0.085 3.915 16 N -0.719 5.719 17 C 0.528 3.472 18 O -0.521 6.521 19 C -0.172 4.172 20 C 0.525 3.475 21 O -0.485 6.485 22 H 0.100 0.900 23 H 0.008 0.992 24 H 0.046 0.954 25 H 0.263 0.737 26 H 0.127 0.873 27 H 0.103 0.897 28 H 0.413 0.587 29 H 0.136 0.864 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.163 -6.155 -12.696 14.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.138 3.862 3 H 0.093 0.907 4 C -0.538 4.538 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.730 3.270 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.294 5.294 13 C 0.278 3.722 14 O -0.317 6.317 15 C -0.043 4.043 16 N -0.377 5.377 17 C 0.314 3.686 18 O -0.396 6.396 19 C -0.215 4.215 20 C 0.312 3.688 21 O -0.358 6.358 22 H 0.118 0.882 23 H 0.027 0.973 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.145 0.855 27 H 0.121 0.879 28 H 0.252 0.748 29 H 0.154 0.846 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.755 -5.635 -12.003 13.281 hybrid contribution 0.315 -0.818 0.854 1.224 sum -0.440 -6.454 -11.149 12.890 Atomic orbital electron populations 1.22138 0.96973 1.00923 1.01017 1.19474 0.92025 0.94823 0.79914 0.90730 1.21034 1.31254 1.11953 0.89601 0.92307 1.24811 0.95153 0.95039 0.98929 1.69853 1.36853 1.22877 1.23737 0.86428 0.78449 0.80022 0.82147 1.20724 1.21109 1.19903 1.46520 1.45153 1.12268 1.25420 1.20570 0.79618 0.81898 0.90104 1.90818 1.36979 1.65841 1.38094 1.22116 0.82578 1.03796 0.95782 1.46001 1.09839 1.12475 1.69363 1.20356 0.87313 0.84986 0.75987 1.90782 1.14828 1.85198 1.48799 1.22394 1.03793 0.98220 0.97099 1.19710 0.78200 0.85272 0.85649 1.90752 1.48287 1.21734 1.74978 0.88190 0.97255 0.93449 0.92751 0.85502 0.87926 0.74819 0.84561 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 8.84 37.16 0.33 -3.28 16 2 C 0.24 5.94 2.38 -69.09 -0.16 5.78 16 3 H 0.08 2.10 6.55 -51.93 -0.34 1.76 16 4 C -0.50 -14.02 7.20 -34.44 -0.25 -14.26 16 5 H 0.06 1.70 7.06 -52.49 -0.37 1.33 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 8 Si 0.90 22.18 29.54 -169.99 -5.02 17.15 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.55 -11.13 2.48 -110.47 -0.27 -11.41 16 13 C 0.49 8.65 6.45 -11.80 -0.08 8.57 16 14 O -0.45 -9.68 13.19 5.60 0.07 -9.61 16 15 C 0.09 0.88 6.32 -5.16 -0.03 0.85 16 16 N -0.72 -8.01 5.55 -61.16 -0.34 -8.35 16 17 C 0.53 7.33 7.39 -10.71 -0.08 7.25 16 18 O -0.52 -9.08 17.99 5.55 0.10 -8.98 16 19 C -0.17 -2.16 5.50 -28.89 -0.16 -2.31 16 20 C 0.52 9.71 7.02 -11.67 -0.08 9.63 16 21 O -0.49 -10.94 15.93 5.60 0.09 -10.85 16 22 H 0.10 2.63 6.07 -51.93 -0.32 2.31 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.05 1.11 6.25 -51.93 -0.32 0.79 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.13 0.99 8.09 -51.93 -0.42 0.57 16 27 H 0.10 0.71 6.59 -51.93 -0.34 0.37 16 28 H 0.41 3.91 8.96 -40.82 -0.37 3.55 16 29 H 0.14 1.59 8.10 -51.93 -0.42 1.17 16 30 H 0.12 0.99 6.64 -51.93 -0.34 0.65 16 LS Contribution 254.48 15.07 3.83 3.83 Total: -1.00 -35.22 254.48 -4.32 -39.53 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -2.80 Total: -0.22 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: -0.61 Total: 13.88 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.01 Total: -44.74 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: 0.26 Total: -29.44 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -35.22 -4.32 -39.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086037.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.841 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds